BAC Information

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BAC

Clone NameB6Ng01-262M17
Chromosome1 (Build37)
Map Location 39,314,140 - 39,475,369
singlet/doubletdoublet
Overlap geneNpas2, LOC100041999, Rpl31, Tbc1d8
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneD1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262M17.bB6Ng01-262M17.g
ACCGA067118GA067119
length1,1171,118
definitionB6Ng01-262M17.b B6Ng01-262M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,314,140 - 39,315,262)(39,474,254 - 39,475,369)
sequence
gaattccataattgaagggaagctagggattgtggaggcagctgctgcct
ctctggttttttattgcctgtttgtcgaggaagaatcacaaggtagaagt
cacttcctactttcccccaaatgatgagggggaacatctccagttcatta
gcacctgtccttcaaagcctttttataacagaaaaaataatgagaaaaaa
tgctgtccatctccggacctgaggcccctcatcagggcctcctggcagga
cagaaggtacattcactgttcacgagagataaacccagccagtggggaga
tgtgtgtgcttactgtcccctgttttgatttcaacttgttcttgttttcc
gagttttgattttcttcctttgaacaaactaaactcaccatgttttgttg
gtttagtagagaggagaattgggattttccagctaacttgggacctgtaa
ttcaaaccacctcccagccaatttgaaaacatcacggttttattttgtga
aaacatcggccttgcagcacaataggcttaaggaggtcatttcacggaac
actcatgatgacacagagcgatgcactgggcctataaagatgctacagaa
agttcaaaatggctctagagataatttaccaccggcacacactgcttggc
cctcagcctactttaataaataaagttttattggaacacagccgtgtacc
taatgtatatgtggtcaatgcctggttgaacacggcagttagtgttaagc
agtcacacaaagactatagagtttgctccaaaactatttaccagctacca
aaaccagctttaattaaaaaaaaaaatactgttcccatggcttcgttttt
aaaggatttataaaggatttcttttgttttaataaataagatcacaggcc
cgtgacttggacaggattacaggctgatagaaaaatccctgatcacaaag
gttgggaggaatccttctcttctgggtcacgagggaatagatgtgttttg
acttataataagttcatacattgttgtgaggtctcaggaatgcagtgtta
ttagctggaaggcacagttaagccagagttcatttgttatctggccataa
cacatgctaattgtttt
gaattctgtatcattaactttgttccggacactgtaaggaatctggagat
aacttcaggaattcaggaggagtgtgtaagttacctgcaaaggccgtgcc
accttaaagaagaacctgagccgtctcagacgctcttgtctttgggaggt
cctggatcaagcacatatacaggcccagccctctggtgcatgtagaggga
ctattgtagtttgaagaactcttaattaaaggtttagatttagaaaatga
aaacagacatgttttcatgacaggaaaggggaaccatttgctaatcaaaa
caggttgcctgtttttaaaagctcgggcccccaggagctaattctctcca
ctgagcccctctactgccccccttgcgaatctctcagcagcacatagggg
cagcacaccctaccctggaggggggaagatgcagagcaccggaagctggc
cgcttgccagggtcacaccaggcgctggggtgctcgagggcagcttagct
gcaggctctgacagagtgtactctcagagtgttccttctgacgcatgtac
ggtttcttatccgtgcccttgactgcggttggtgttttgctcccttgtat
tctgcctcactgtttgctttgtctttgtggagtggattttattaagggag
gaaatgttcccgggtggaccagattagtgtcttcctgaacttcgtaccaa
ggtggcagaagacatgccagcttgttttctctgagcagaggacttgcagg
gtgcttcaaggaacatctgggaggtggcccagcagcggggaaagtgtgag
ctttctgggtcaggattgttacacttgttttcggtagcttcggcatttcc
ttggaacaacactagctggaattttccatgtgggcttcacctttagaagt
ggggagagggtggtcaattaatgtttcttccttgtcccggaggtactcgc
aattgagctataatgtgtttttttgttgtaaagtaatttggcctatgaat
aaataacttcatcgaagaacatctctcgtctgtgatgtttacattgcctg
ataaggggttaagatcaaaatctccttaacagcctgagtgagttggctac
atgccgttagtcctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39314140_39315262
seq2: B6Ng01-262M17.b_45_1161

seq1  GAATTCCATAATTGAAGGGAAGCTAGGGATTGTGGAGGCAGCTGCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATTGAAGGGAAGCTAGGGATTGTGGAGGCAGCTGCTGCCT  50

seq1  CTCTGGTTTTTTATTGCCTGTTTGTCGAGGAAGAATCACAAGGTAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTTTTATTGCCTGTTTGTCGAGGAAGAATCACAAGGTAGAAGT  100

seq1  CACTTCCTACTTTCCCCCAAATGATGAGGGGGAACATCTCCAGTTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTACTTTCCCCCAAATGATGAGGGGGAACATCTCCAGTTCATTA  150

seq1  GCACCTGTCCTTCAAAGCCTTTTTATAACAGAAAAAATAATGAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTCCTTCAAAGCCTTTTTATAACAGAAAAAATAATGAGAAAAAA  200

seq1  TGCTGTCCATCTCCGGACCTGAGGCCCCTCATCAGGGCCTCCTGGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCATCTCCGGACCTGAGGCCCCTCATCAGGGCCTCCTGGCAGGA  250

seq1  CAGAAGGTACATTCACTGTTCACGAGAGATAAACCCAGCCAGTGGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTACATTCACTGTTCACGAGAGATAAACCCAGCCAGTGGGGAGA  300

seq1  TGTGTGTGCTTACTGTCCCCTGTTTTGATTTCAACTTGTTCTTGTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTTACTGTCCCCTGTTTTGATTTCAACTTGTTCTTGTTTTCC  350

seq1  GAGTTTTGATTTTCTTCCTTTGAACAAACTAAACTCACCATGTTTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGATTTTCTTCCTTTGAACAAACTAAACTCACCATGTTTTGTTG  400

seq1  GTTTAGTAGAGAGGAGAATTGGGATTTTCCAGCTAACTTGGGACCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTAGAGAGGAGAATTGGGATTTTCCAGCTAACTTGGGACCTGTAA  450

seq1  TTCAAACCACCTCCCAGCCAATTTGAAAACATCACGGTTTTATTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCACCTCCCAGCCAATTTGAAAACATCACGGTTTTATTTTGTGA  500

seq1  AAACATCGGCCTTGCAGCACAATAGGCTTAAGGAGGTCATTTCACGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCGGCCTTGCAGCACAATAGGCTTAAGGAGGTCATTTCACGGAAC  550

seq1  ACTCATGATGACACAGAGCGATGCACTGGGCCTATAAAGATGCTACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGATGACACAGAGCGATGCACTGGGCCTATAAAGATGCTACAGAA  600

seq1  AGTTCAAAATGGCTCTAGAGATAATTTACCACCGGCACACACTGCTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAAATGGCTCTAGAGATAATTTACCACCGGCACACACTGCTTGGC  650

seq1  CCTCAGCCTACTTTAATAAATAAAGTTTTATTGGAACACAGCCGTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTACTTTAATAAATAAAGTTTTATTGGAACACAGCCGTGTACC  700

seq1  TAATGTATATGTGGTCAATGCCTGGTTGAACACGGCAGTTAGTGTTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATATGTGGTCAATGCCTGGTTGAACACGGCAGTTAGTGTTAAGC  750

seq1  AGTCACACAAAGACTATAGAGTTTGCTCCAAAACTATTTACCAGCTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACAAAGACTATAGAGTTTGCTCCAAAACTATTTACCAGCTACCA  800

seq1  AAACCAGCTTTAATTAAAAAAAAAAATACTGTTCCCATGGCTTCG-TTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACCAGCTTTAATTAAAAAAAAAAATACTGTTCCCATGGCTTCGTTTTT  850

seq1  AAAGGATTTAT-AAGGATTTCTTTTGTTTTAATAAATAAGATCACAGGCC  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTTATAAAGGATTTCTTTTGTTTTAATAAATAAGATCACAGGCC  900

seq1  CGTGACTTGGACAGGATTACAGGCTGATAAGAAAAATCCTTGATCACAAA  948
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CGTGACTTGGACAGGATTACAGGCTGAT-AGAAAAATCCCTGATCACAAA  949

seq1  GGTT-GGAGGAATCCTTCTTCTTCTGGGTCACGAGGGAATAAGATGTGTT  997
      |||| ||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GGTTGGGAGGAATCCTTC-TCTTCTGGGTCACGAGGGAAT-AGATGTGTT  997

seq1  TTGACTATAAATAAAGTTCATACATTGTTTGTGAGGTTCTCAGGGAATTG  1047
      |||||| || |  |||||||||||||| |||||||| |||||||  | ||
seq2  TTGACT-TATAATAAGTTCATACATTG-TTGTGAGG-TCTCAGG--AATG  1042

seq1  CAGGTGTTA-TAGCTGAGAGGCACAGGTTAAGCCCAGAGGTCATATG-TA  1095
      || |||||| ||||||  ||||||| |||||| |||||| |||| || ||
seq2  CA-GTGTTATTAGCTGGAAGGCACA-GTTAAG-CCAGAGTTCATTTGTTA  1089

seq1  TCTTGGCCATAACA-TGGCTTATTGTTTT  1123
      || |||||||||||   ||| ||||||||
seq2  TC-TGGCCATAACACATGCTAATTGTTTT  1117

seq1: chr1_39474254_39475369
seq2: B6Ng01-262M17.g_69_1186 (reverse)

seq1  AGCTAGGACTACAGGCATGTA-CCAACTCACTCA-GCTCT--AAGAGATT  46
      |||||||||||  |||||||| |||||||||||| ||| |  | |||| |
seq2  AGCTAGGACTAACGGCATGTAGCCAACTCACTCAGGCTGTTAAGGAGA-T  49

seq1  TTTAATCTTAACCCC-TATCA-GCAATGTATACATCACAGAAGGAAGAAG  94
      ||| ||||||||||| ||||| |||||||| |||||||||| |  || ||
seq2  TTTGATCTTAACCCCTTATCAGGCAATGTAAACATCACAGACG--AG-AG  96

seq1  ATGTTCTTCGATGAAAGTTATTTATTCATAGGCAAAATTACTT--AAAAA  142
      ||||||||||||| ||||||||||||||||||| |||||||||   || |
seq2  ATGTTCTTCGATG-AAGTTATTTATTCATAGGCCAAATTACTTTACAACA  145

seq1  AAAAAACACATTAATAGCTCAATTGCGAGTACCTCCGGGACAAGGAAGAA  192
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACATT-ATAGCTCAATTGCGAGTACCTCCGGGACAAGGAAGAA  194

seq1  ACATTAATTGACCACCCTCTCCCCACTTCTAAAGGTGAAGCCCACATGGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATTGACCACCCTCTCCCCACTTCTAAAGGTGAAGCCCACATGGA  244

seq1  AAATTCCAGCTAGTGTTGTTCCAAGGAAATGCCGAAGCTACCGAAAACAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGCTAGTGTTGTTCCAAGGAAATGCCGAAGCTACCGAAAACAA  294

seq1  GTGTAACAATCCTGACCCAGAAAGCTCACACTTTCCCCGCTGCTGGGCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAATCCTGACCCAGAAAGCTCACACTTTCCCCGCTGCTGGGCCA  344

seq1  CCTCCCAGATGTTCCTTGAAGCACCCTGCAAGTCCTCTGCTCAGAGAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGATGTTCCTTGAAGCACCCTGCAAGTCCTCTGCTCAGAGAAAA  394

seq1  CAAGCTGGCATGTCTTCTGCCACCTTGGTACGAAGTTCAGGAAGACACTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCATGTCTTCTGCCACCTTGGTACGAAGTTCAGGAAGACACTA  444

seq1  ATCTGGTCCACCCGGGAACATTTCCTCCCTTAATAAAATCCACTCCACAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCCACCCGGGAACATTTCCTCCCTTAATAAAATCCACTCCACAA  494

seq1  AGACAAAGCAAACAGTGAGGCAGAATACAAGGGAGCAAAACACCAACCGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCAAACAGTGAGGCAGAATACAAGGGAGCAAAACACCAACCGC  544

seq1  AGTCAAGGGCACGGATAAGAAACCGTACATGCGTCAGAAGGAACACTCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGGCACGGATAAGAAACCGTACATGCGTCAGAAGGAACACTCTG  594

seq1  AGAGTACACTCTGTCAGAGCCTGCAGCTAAGCTGCCCTCGAGCACCCCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACACTCTGTCAGAGCCTGCAGCTAAGCTGCCCTCGAGCACCCCAG  644

seq1  CGCCTGGTGTGACCCTGGCAAGCGGCCAGCTTCCGGTGCTCTGCATCTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGTGTGACCCTGGCAAGCGGCCAGCTTCCGGTGCTCTGCATCTTC  694

seq1  CCCCCTCCAGGGTAGGGTGTGCTGCCCCTATGTGCTGCTGAGAGATTCGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCAGGGTAGGGTGTGCTGCCCCTATGTGCTGCTGAGAGATTCGC  744

seq1  AAGGGGGGCAGTAGAGGGGCTCAGTGGAGAGAATTAGCTCCTGGGGGCCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGCAGTAGAGGGGCTCAGTGGAGAGAATTAGCTCCTGGGGGCCC  794

seq1  GAGCTTTTAAAAACAGGCAACCTGTTTTGATTAGCAAATGGTTCCCCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTAAAAACAGGCAACCTGTTTTGATTAGCAAATGGTTCCCCTTT  844

seq1  CCTGTCATGAAAACATGTCTGTTTTCATTTTCTAAATCTAAACCTTTAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGAAAACATGTCTGTTTTCATTTTCTAAATCTAAACCTTTAAT  894

seq1  TAAGAGTTCTTCAAACTACAATAGTCCCTCTACATGCACCAGAGGGCTGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTCTTCAAACTACAATAGTCCCTCTACATGCACCAGAGGGCTGG  944

seq1  GCCTGTATATGTGCTTGATCCAGGACCTCCCAAAGACAAGAGCGTCTGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATATGTGCTTGATCCAGGACCTCCCAAAGACAAGAGCGTCTGAG  994

seq1  ACGGCTCAGGTTCTTCTTTAAGGTGGCACGGCCTTTGCAGGTAACTTACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTCAGGTTCTTCTTTAAGGTGGCACGGCCTTTGCAGGTAACTTACA  1044

seq1  CACTCCTCCTGAATTCCTGAAGTTATCTCCAGATTCCTTACAGTGTCCGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCCTGAATTCCTGAAGTTATCTCCAGATTCCTTACAGTGTCCGG  1094

seq1  AACAAAGTTAATGATACAGAATTC  1116
      ||||||||||||||||||||||||
seq2  AACAAAGTTAATGATACAGAATTC  1118