BAC Information

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BAC

Clone NameB6Ng01-265K05
Chromosome1 (Build37)
Map Location 52,159,530 - 52,271,038
singlet/doubletdoublet
Overlap geneStat4, Stat1, Gls
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, LOC100042634
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265K05.bB6Ng01-265K05.g
ACCGA069234GA069235
length8421,102
definitionB6Ng01-265K05.b B6Ng01-265K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,159,530 - 52,160,371)(52,269,913 - 52,271,038)
sequence
gaattctgaaagcccatgttgccaccctctctctcacacatggtctgtac
tgaacagactccagaaggtcagacgttttagccatggggataacttgggt
gggaagaatgactgcatggaccattcgcaggagcctaaatattccagttt
ctgtgctttcaggagaagtgagattccactctgtagaaccctacaacaaa
gggagactgtcggctctgccgttcgctgacatcctgcgagactacaaggt
tatcatggctgaaaacatccctgaaaaccctctgaagtacctctaccctg
acattcccaaagacaaagcctttggcaaacactacagctcccagccgtgc
gaaggtaatatttgcgttttctttcctcttgagatttttgggaaatgata
tcaggtcagaggaaagtgaatgaatttcctctctgattactgtggccttt
gtaatatcccagagtcatatggaggtttacagccttagcaaggcaagtgc
tatgccagtgcttagtagagtaacatttgcagggcaactagacttcacca
tggccagatcagccctatgtgatgcctagagcccatagtccttaaaatag
gagtgatggtcagtcatttcatttctatggccaagggaaaggaaggaaga
accgatgagtgtaaactttcacagcaaaccgatgagtgtaaaatatagac
ctgtattttacaaagtaatttgagagttgagagctgttaaatctctctct
ctttctatctctcagtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgcaagagagagagagagagagagaggatagagagggga
gaattcttgcataattattaaaaagttttataatgagggagaactataaa
gagatgatttgaattttttttttaaatctaaattaagaaatgcctttgga
aaagtgctaaactgtgagaatgttattttcaagaatggtacttttgggct
taggggaagatggcttagtggataaagtgcttggtttacaaaagtgaagc
ctggacttggagtctctggcacagaatcttagacaaatatagtggcttcc
tataattgtagcagttgggaggaaggcagaggttctttctctgaaagctg
gctaacaaactggggagtagaccagctccatgttcagcaggtgccctgcc
tggagaacataaactggagtacggaggaggaaaattgatggtagcctcct
cacaggtgtgcacacacatgcagcgggacatatgcagaaatgtctgcgtg
agttaatgccaagtgtattttaatttagctggaactcagacattaagggt
ttattgtcaagctctagtttggatatgagaagaattatgccatttctttt
ttttcccactggaaaaaaatagtttaaaaatataatccttcctttaagtt
actttttaaaatgaaaatatagcttaacgtaaaaatgtacaactggtaca
tggtatatatagctcgatgaatttatattaatgatataatttcattcctt
ttttttttttttccccaattttgagccagtttctttagctgggcttgcct
aaaacttactttgtaccccaggctatcctcagactatatcttcatgcctc
tatctgtttgatcacgggcatgttccactgtgtctggcagtaccctaaaa
cttactaagactacaagtcagtaaacttacttttagacttctcttttgaa
ggtataatttaaaactttttttatctgttgtgattttattatctatgatt
attcttagtataataaaaagcatggtttttattatagttaaacatgttat
tttacgagtattcttaaagctagtttactctgagtagtagtaagaaaaat
cattacatctataaactgttactctgttgagtactagcttgccatttttt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52159530_52160371
seq2: B6Ng01-265K05.b_47_888

seq1  GAATTCTGAAAGCCCATGTTGCCACCCTCTCTCTCACACATGGTCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGCCCATGTTGCCACCCTCTCTCTCACACATGGTCTGTAC  50

seq1  TGAACAGACTCCAGAAGGTCAGACGTTTTAGCCATGGGGATAACTTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGACTCCAGAAGGTCAGACGTTTTAGCCATGGGGATAACTTGGGT  100

seq1  GGGAAGAATGACTGCATGGACCATTCGCAGGAGCCTAAATATTCCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATGACTGCATGGACCATTCGCAGGAGCCTAAATATTCCAGTTT  150

seq1  CTGTGCTTTCAGGAGAAGTGAGATTCCACTCTGTAGAACCCTACAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTCAGGAGAAGTGAGATTCCACTCTGTAGAACCCTACAACAAA  200

seq1  GGGAGACTGTCGGCTCTGCCGTTCGCTGACATCCTGCGAGACTACAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGTCGGCTCTGCCGTTCGCTGACATCCTGCGAGACTACAAGGT  250

seq1  TATCATGGCTGAAAACATCCCTGAAAACCCTCTGAAGTACCTCTACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGCTGAAAACATCCCTGAAAACCCTCTGAAGTACCTCTACCCTG  300

seq1  ACATTCCCAAAGACAAAGCCTTTGGCAAACACTACAGCTCCCAGCCGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCAAAGACAAAGCCTTTGGCAAACACTACAGCTCCCAGCCGTGC  350

seq1  GAAGGTAATATTTGCGTTTTCTTTCCTCTTGAGATTTTTGGGAAATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAATATTTGCGTTTTCTTTCCTCTTGAGATTTTTGGGAAATGATA  400

seq1  TCAGGTCAGAGGAAAGTGAATGAATTTCCTCTCTGATTACTGTGGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGAGGAAAGTGAATGAATTTCCTCTCTGATTACTGTGGCCTTT  450

seq1  GTAATATCCCAGAGTCATATGGAGGTTTACAGCCTTAGCAAGGCAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATCCCAGAGTCATATGGAGGTTTACAGCCTTAGCAAGGCAAGTGC  500

seq1  TATGCCAGTGCTTAGTAGAGTAACATTTGCAGGGCAACTAGACTTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGTGCTTAGTAGAGTAACATTTGCAGGGCAACTAGACTTCACCA  550

seq1  TGGCCAGATCAGCCCTATGTGATGCCTAGAGCCCATAGTCCTTAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGATCAGCCCTATGTGATGCCTAGAGCCCATAGTCCTTAAAATAG  600

seq1  GAGTGATGGTCAGTCATTTCATTTCTATGGCCAAGGGAAAGGAAGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGGTCAGTCATTTCATTTCTATGGCCAAGGGAAAGGAAGGAAGA  650

seq1  ACCGATGAGTGTAAACTTTCACAGCAAACCGATGAGTGTAAAATATAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGAGTGTAAACTTTCACAGCAAACCGATGAGTGTAAAATATAGAC  700

seq1  CTGTATTTTACAAAGTAATTTGAGAGTTGAGAGCTGTTAAATCTCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTACAAAGTAATTTGAGAGTTGAGAGCTGTTAAATCTCTCTCT  750

seq1  CTTTCTATCTCTCAGTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCTCTCAGTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  800

seq1  GTGTGCAAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGGGGA  842
      ||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTGCAAGAGAGAGAGAGAGAGAGAGAGGATAGAGAGGGGA  842

seq1: chr1_52269913_52271038
seq2: B6Ng01-265K05.g_64_1165 (reverse)

seq1  AAAAAAAATGGCAAAAGCTTAAAGTACTCAACAGAGTAACAGTTTTATTA  50
      ||||||||||||  |||||   |||||||||||||||||||||||   ||
seq2  AAAAAAAATGGC--AAGCT---AGTACTCAACAGAGTAACAGTTT--ATA  43

seq1  GATGTTAAATGATTTTTCTTACTACTACTTCAGAGTAAACTAGCCCTTTT  100
      |||||  ||||||||||||||||||||| |||||||||||||||   |||
seq2  GATGT--AATGATTTTTCTTACTACTAC-TCAGAGTAAACTAGC---TTT  87

seq1  AAGAATTACTCCTTAAAAATTAACATGTTTAACTATAATAAAAAACCATG  150
      ||||| ||||| |   ||| ||||||||||||||||||| ||||||||||
seq2  AAGAA-TACTCGT---AAAATAACATGTTTAACTATAAT-AAAAACCATG  132

seq1  CTTTTTATTATAACTTAAGAATAATTCATTAGATAATTAAAATCACAAAC  200
      ||||||||||||   ||||||||| ||| ||||||| ||||||||| |||
seq2  CTTTTTATTATA--CTAAGAATAA-TCA-TAGATAA-TAAAATCAC-AAC  176

seq1  AGAT-AAAAAAGTTTTAAATTATACCTTCAAAAGAGAAGTCTAAAAGTAA  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAAAAGTTTTAAATTATACCTTCAAAAGAGAAGTCTAAAAGTAA  226

seq1  GTTTACCTGACTTGTAGTCTTAGTAAGTTTTAGGGTACTGCCAGACACAG  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTA-CTGACTTGTAGTCTTAGTAAGTTTTAGGGTACTGCCAGACACAG  275

seq1  TGGAACATGCCCGTGATCAAACAGATAGAGGCATGAAGATATAGTCTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATGCCCGTGATCAAACAGATAGAGGCATGAAGATATAGTCTGAG  325

seq1  GATAGCCTGGGGTACAAAGTAAGTTTTAGGCAAGCCCAGCTAAAGAAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTGGGGTACAAAGTAAGTTTTAGGCAAGCCCAGCTAAAGAAACT  375

seq1  GGCTCAAAATTGGGGAAAAAAAAAAAAAAGGAATGAAATTATATCATTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAATTGGGGAAAAAAAAAAAAAAGGAATGAAATTATATCATTAA  425

seq1  TATAAATTCATCGAGCTATATATACCATGTACCAGTTGTACATTTTTACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCATCGAGCTATATATACCATGTACCAGTTGTACATTTTTACG  475

seq1  TTAAGCTATATTTTCATTTTAAAAAGTAACTTAAAGGAAGGATTATATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTATATTTTCATTTTAAAAAGTAACTTAAAGGAAGGATTATATTT  525

seq1  TTAAACTATTTTTTTCCAGTGGGAAAAAAAAGAAATGGCATAATTCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATTTTTTTCCAGTGGGAAAAAAAAGAAATGGCATAATTCTTCT  575

seq1  CATATCCAAACTAGAGCTTGACAATAAACCCTTAATGTCTGAGTTCCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAAACTAGAGCTTGACAATAAACCCTTAATGTCTGAGTTCCAGC  625

seq1  TAAATTAAAATACACTTGGCATTAACTCACGCAGACATTTCTGCATATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAATACACTTGGCATTAACTCACGCAGACATTTCTGCATATGT  675

seq1  CCCGCTGCATGTGTGTGCACACCTGTGAGGAGGCTACCATCAATTTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGCATGTGTGTGCACACCTGTGAGGAGGCTACCATCAATTTTCCT  725

seq1  CCTCCGTACTCCAGTTTATGTTCTCCAGGCAGGGCACCTGCTGAACATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGTACTCCAGTTTATGTTCTCCAGGCAGGGCACCTGCTGAACATGG  775

seq1  AGCTGGTCTACTCCCCAGTTTGTTAGCCAGCTTTCAGAGAAAGAACCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCTACTCCCCAGTTTGTTAGCCAGCTTTCAGAGAAAGAACCTCT  825

seq1  GCCTTCCTCCCAACTGCTACAATTATAGGAAGCCACTATATTTGTCTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTCCCAACTGCTACAATTATAGGAAGCCACTATATTTGTCTAAG  875

seq1  ATTCTGTGCCAGAGACTCCAAGTCCAGGCTTCACTTTTGTAAACCAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGCCAGAGACTCCAAGTCCAGGCTTCACTTTTGTAAACCAAGCA  925

seq1  CTTTATCCACTAAGCCATCTTCCCCTAAGCCCAAAAGTACCATTCTTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCACTAAGCCATCTTCCCCTAAGCCCAAAAGTACCATTCTTGAA  975

seq1  AATAACATTCTCACAGTTTAGCACTTTTCCAAAGGCATTTCTTAATTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTCTCACAGTTTAGCACTTTTCCAAAGGCATTTCTTAATTTAG  1025

seq1  ATTTAAAAAAAAAATTCAAATCATCTCTTTATAGTTCTCCCTCATTATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAAAATTCAAATCATCTCTTTATAGTTCTCCCTCATTATAA  1075

seq1  AACTTTTTAATAATTATGCAAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  AACTTTTTAATAATTATGCAAGAATTC  1102