BAC Information

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BAC

Clone NameB6Ng01-267P16
Chromosome1 (Build37)
Map Location 133,464,400 - 133,655,868
singlet/doubletdoublet
Overlap geneAvpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9
Upstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik
Downstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267P16.bB6Ng01-267P16.g
ACCGA070962GA070963
length2331,033
definitionB6Ng01-267P16.b B6Ng01-267P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,464,400 - 133,464,632)(133,654,844 - 133,655,868)
sequence
agtgctgatcagtcaaagctctgttctccatgaaaggggagcttcaagtt
tgcagagcaccttaccttgggtcctcttagcatagtcccattatgttccc
agtatgttgtcctttgataccaggagggatcaaaactggaaatacaaagt
ttaagcactgtcaggtttccaaaaagcaagtttctgtccctaaggtacct
gcatagatcctttttggggtagggtgggggttg
gaattctttccccaaattcctcctcaatctgaggattggcaagtgtagcc
tctggagccacacacttcgttctgggcccagttttacatttctcctctcc
ctgcatccttggatggctcacaccttaacatctttgtgagaggctctgag
ggtgccctgaaataccagataccttgcccactattctcctgcctaggaat
aaaactcccagaaagccggaggttggaatcagtaacacactacccagcag
ccgtctcaccgacaagccagacagtcagcttcagtctccccctcacccat
acaatggaggaataaaatttacataatttacttcgtaggataacggaaac
caaaggtgacagtgatggccaaccaagcgctactcccactcatagggatt
gttttgctgcaggcggtcactgttcccccagtctccccctcagttgggct
cttaccttggggagagggtacagataggatcccaggaccagcatggtgat
catcaccaccagagacacacacaagctggccacctagtcagggaaagagc
tggggtgagcgggcttgctgacttggctgcttcccagctgatcattgggt
agaatggaagctagctgggtaaggctggcatgcccatggcccctgaactt
ctcagggacagttactctcttttcactcctaccccagttccctgagacaa
agcttacctgggatttccctccagccccatccacagccagtgtgactgag
agagcgcagcaaatgacgtggatcttgaaaaaggagccgaagaagttgct
acagcccagggcaatcatctcctgtggagagatagcagggttggttggga
gggagtagggctgacctactccgtacccttgagccctgccaggggcagct
ggagatacctgtcatctgtgtgatgagggtcaggggcctatggtaggaaa
gggccagtaattgccatacacccattagcacttcaaatgcttagcctcta
tgtgctgggggagattggtttcagcaggataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133464400_133464632
seq2: B6Ng01-267P16.b_50_282

seq1  AGTGCTGATCAGTCAAAGCTCTGTTCTCCATGAAAGGGGAGCTTCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATCAGTCAAAGCTCTGTTCTCCATGAAAGGGGAGCTTCAAGTT  50

seq1  TGCAGAGCACCTTACCTTGGGTCCTCTTAGCATAGTCCCATTATGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCACCTTACCTTGGGTCCTCTTAGCATAGTCCCATTATGTTCCC  100

seq1  AGTATGTTGTCCTTTGATACCAGGAGGGATCAAAACTGGAAATACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTGTCCTTTGATACCAGGAGGGATCAAAACTGGAAATACAAAGT  150

seq1  TTAAGCACTGTCAGGTTTCCAAAAAGCAAGTTTCTGTCCCTAAGGTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACTGTCAGGTTTCCAAAAAGCAAGTTTCTGTCCCTAAGGTACCT  200

seq1  GCATAGATCCTTTTTGGGGTAGGGTGGGGGTTG  233
      |||||||||||||||||||||||||||||||||
seq2  GCATAGATCCTTTTTGGGGTAGGGTGGGGGTTG  233

seq1: chr1_133654844_133655868
seq2: B6Ng01-267P16.g_69_1101 (reverse)

seq1  TTTA-CCTGCTGAA--CCATCT-CCCCAGC-CAT-GAGGCT-AGCCTTTT  43
      |||| |||||||||  | |||| ||||||| ||| |||||| ||| ||| 
seq2  TTTATCCTGCTGAAACCAATCTCCCCCAGCACATAGAGGCTAAGCATTTG  50

seq1  GAGTGCTTATGGTTGTATGGC-ATTACTGGCCCTTCCTAACCATAGGCCC  92
       |||||| |||| |||||||| ||||||||||||| |  |||||||||||
seq2  AAGTGCTAATGGGTGTATGGCAATTACTGGCCCTTTCCTACCATAGGCCC  100

seq1  CTGGCCCTCCTCACACAGATGACAGGTATCTCCAGCTGCCCCTGGCAGGG  142
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTCATCACACAGATGACAGGTATCTCCAGCTGCCCCTGGCAGGG  150

seq1  CTCAGGGGTACGGGGTAGGTCAGCCCTACTCCCTCCCAACCAACCCTGCT  192
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGTACGGAGTAGGTCAGCCCTACTCCCTCCCAACCAACCCTGCT  200

seq1  ATCTCTCCACAGGAGATGATTGCCCTGGGCTGTAGCAACTTCTTCGGCTC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCACAGGAGATGATTGCCCTGGGCTGTAGCAACTTCTTCGGCTC  250

seq1  CTTTTTCAAGATCCACGTCATTTGCTGCGCTCTCTCAGTCACACTGGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAAGATCCACGTCATTTGCTGCGCTCTCTCAGTCACACTGGCTG  300

seq1  TGGATGGGGCTGGAGGGAAATCCCAGGTAAGCTTTGTCTCAGGGAACTGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGGCTGGAGGGAAATCCCAGGTAAGCTTTGTCTCAGGGAACTGG  350

seq1  GGTAGGAGTGAAAAGAGAGTAACTGTCCCTGAGAAGTTCAGGGGCCATGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGTGAAAAGAGAGTAACTGTCCCTGAGAAGTTCAGGGGCCATGG  400

seq1  GCATGCCAGCCTTACCCAGCTAGCTTCCATTCTACCCAATGATCAGCTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAGCCTTACCCAGCTAGCTTCCATTCTACCCAATGATCAGCTGG  450

seq1  GAAGCAGCCAAGTCAGCAAGCCCGCTCACCCCAGCTCTTTCCCTGACTAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCCAAGTCAGCAAGCCCGCTCACCCCAGCTCTTTCCCTGACTAG  500

seq1  GTGGCCAGCTTGTGTGTGTCTCTGGTGGTGATGATCACCATGCTGGTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGCTTGTGTGTGTCTCTGGTGGTGATGATCACCATGCTGGTCCT  550

seq1  GGGATCCTATCTGTACCCTCTCCCCAAGGTAAGAGCCCAACTGAGGGGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTATCTGTACCCTCTCCCCAAGGTAAGAGCCCAACTGAGGGGGA  600

seq1  GACTGGGGGAACAGTGACCGCCTGCAGCAAAACAATCCCTATGAGTGGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGGAACAGTGACCGCCTGCAGCAAAACAATCCCTATGAGTGGGA  650

seq1  GTAGCGCTTGGTTGGCCATCACTGTCACCTTTGGTTTCCGTTATCCTACG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGCTTGGTTGGCCATCACTGTCACCTTTGGTTTCCGTTATCCTACG  700

seq1  AAGTAAATTATGTAAATTTTATTCCTCCATTGTATGGGTGAGGGGGAGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTATGTAAATTTTATTCCTCCATTGTATGGGTGAGGGGGAGAC  750

seq1  TGAAGCTGACTGTCTGGCTTGTCGGTGAGACGGCTGCTGGGTAGTGTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGACTGTCTGGCTTGTCGGTGAGACGGCTGCTGGGTAGTGTGTT  800

seq1  ACTGATTCCAACCTCCGGCTTTCTGGGAGTTTTATTCCTAGGCAGGAGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCCAACCTCCGGCTTTCTGGGAGTTTTATTCCTAGGCAGGAGAA  850

seq1  TAGTGGGCAAGGTATCTGGTATTTCAGGGCACCCTCAGAGCCTCTCACAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGCAAGGTATCTGGTATTTCAGGGCACCCTCAGAGCCTCTCACAA  900

seq1  AGATGTTAAGGTGTGAGCCATCCAAGGATGCAGGGAGAGGAGAAATGTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAAGGTGTGAGCCATCCAAGGATGCAGGGAGAGGAGAAATGTAA  950

seq1  AACTGGGCCCAGAACGAAGTGTGTGGCTCCAGAGGCTACACTTGCCAATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCCCAGAACGAAGTGTGTGGCTCCAGAGGCTACACTTGCCAATC  1000

seq1  CTCAGATTGAGGAGGAATTTGGGGAAAGAATTC  1025
      |||||||||||||||||||||||||||||||||
seq2  CTCAGATTGAGGAGGAATTTGGGGAAAGAATTC  1033