BAC Information

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BAC

Clone NameB6Ng01-268H23
Chromosome1 (Build37)
Map Location 92,178,970 - 92,300,531
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268H23.bB6Ng01-268H23.g
ACCGA071337GA071338
length1,1781,097
definitionB6Ng01-268H23.b B6Ng01-268H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,299,355 - 92,300,531)(92,178,970 - 92,180,064)
sequence
gaattcatagagctctttctactactcctgttgttgataccactgatgtc
tcaaccatcaagtccagtgaggaccaggactcaggtggtaaccctggaaa
atcaggcaaacttgacttttctagaatattttcttcctcggcttctgagg
tctttctttccgagggcacacctgaagcctgtttcttccatgtgtccctc
ttcgcctgtctcttcctcccccttcacttttcttctcttcgtcctcatcc
tctccctccttccccctccctgtgctttccctctttctcatccttctccc
ctcttcttgtatgtatgtctatctctttctctgtattttccttctcccag
agtttccatggttcccagggccacacccctctccttcctctctctctctc
ctgagtacagtcagaggctgtaccttggtgccacaggcaagcacacctac
tttaaaattaattctgctccaactatctggatagaattagccaagtcacc
cacctctccaggtgccacattccttgtctctgaaagggaggtctcaggcc
cacctcgtgggctctgtggagagttagttaatgtgttcattcatgcagga
gaagtgccatgcacacgccagagaagacaaatgccaacacctggtaatgg
cgctctggggaacctctctctggattcagcaattacttgtggcagattct
aatttcacaagtcactaacttgggtacgcaaacattttcccatatcggga
cttgtgcctgttgtgtgcctactactgcttgagatgcaagacatcatcca
gtcatttccatgacactcagaggccccttcctggctgttctactagaaca
agacagagccatacttcgaccacactgcactgaagtgtccatgctactgg
gggcttcccattacccacccacccacaggcttggggacctcaaagcaagc
ttgccctgatatgtggctgtgatctcctgcaacccttcaagccacttccc
tgagaacacacatcactaacaagatctccaatatcctaacaaccaaatcc
aaaggcctgcccagtgcttggagacaatctagaagcttatcccatgagca
gctcaggtgagcaacccgcaatttcagacccgcagtcacactgccagtcg
gctgcagattcaactgagctctatctga
gaattctctgaccacagtacaataaaactagagtccaataatggacgtat
aaacaggaaagtgcggccactggaaaattaaaacaaagcaacacaaaaca
aaacattcccgagtagatacagggtcagagatgcaatcgggatcacagta
ataaacaatctgcgtggatttatgcaagagcttggtcctggtgatgatgg
gtgtcgattacaagggccggagcaggaaatgtaggggctgtctaaaacat
ccaagaaggggggctgagtgggaaggattccacatggccattcaaacatc
tttatgggtgggaagaagctcatgacatttccagtcaaaaagccagataa
gcgaattcatctactcaaactgtggccactgtccacctgggagtagtaaa
gaaacgttcgcgtctatttacgtgtggctatgcatctttcttttgctctg
ggatgttttgtacattgtctcgatgaggattaattacgcacccaaacaaa
caaacatagaaaggggcgggtgtggacaagagtagggatctgacatatag
cagttgatttcccatgggcaaaggaaatgggctctgaagtcactgtgtgg
ggctttgaccaaatggaatagtttataaaagctatagtagcaaccgtgtt
tattttctctgcgcaggcccttgttgacagctttcactgttcagacggtg
atcacaggcggattgcttgtgggcctccgttcctgattcctgaggtgagc
tggcaatcttcagaaataccgaggcgtgtgtaaacaaggttattggtgac
tgcagggtgagaccgcctacaacgcccccaaacacgcctcagtgcagaat
gtacttgcagaaatttggctggcagttcagatcattcagacaccatcctt
gaagcttcattaccagggtagatgtgcatcaagactcccgactgagacac
atcagtggactcacccagtgggaatatctcctccccaaagcttccagtcc
aggggctggctgctccgagctgggccaatcaaatttatcctctgatgcat
gtcattatcctttttgcattgtctgtgccagaaagttttgtaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92299355_92300531
seq2: B6Ng01-268H23.b_48_1225 (reverse)

seq1  TCAGTTAGAGCTCA-CTGAATCTGCAGCCGACT-GCAGTGTGACTGCGGG  48
      |||| |||||||||  ||||||||||||||||| ||||||||||||||||
seq2  TCAGATAGAGCTCAGTTGAATCTGCAGCCGACTGGCAGTGTGACTGCGGG  50

seq1  TCTGAATTTGCGGTTTGCTCACCTGAGCTGCTCATGGGATAAGCTTCTAG  98
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTGCGGGTTGCTCACCTGAGCTGCTCATGGGATAAGCTTCTAG  100

seq1  ATTTGTCTCC-AGCACTGGGGCCAGGCC-TTGGA-TTGGTTGTTAGGATA  145
      | |||||||| |||||||||  |||||| ||||| |||||||||||||||
seq2  A-TTGTCTCCAAGCACTGGG--CAGGCCTTTGGATTTGGTTGTTAGGATA  147

seq1  TTGGAGATCCTTGTTAGTGATGTGTGTTCTCAGGGAAGTGGCTTGAAGGG  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAT-CTTGTTAGTGATGTGTGTTCTCAGGGAAGTGGCTTGAAGGG  196

seq1  GTGCAGGAGATCACAGCCACATATCAGGGCAAGCTTGCTTTGAGGTCCCC  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGAGATCACAGCCACATATCAGGGCAAGCTTGCTTTGAGGTCCCC  246

seq1  AAGCCTGTGGGTGGGTGGGTAATGGGAAGCCCCCAGTAGCATGGACACTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTGGGTGGGTGGGTAATGGGAAGCCCCCAGTAGCATGGACACTT  296

seq1  CAGTGCAGTGTGGTCGAAGTATGGCTCTGTCTTGTTCTAGTAGAACAGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTGTGGTCGAAGTATGGCTCTGTCTTGTTCTAGTAGAACAGCC  346

seq1  AGGAAGGGGCCTCTGAGTGTCATGGAAATGACTGGATGATGTCTTGCATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGGCCTCTGAGTGTCATGGAAATGACTGGATGATGTCTTGCATC  396

seq1  TCAAGCAGTAGTAGGCACACAACAGGCACAAGTCCCGATATGGGAAAATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGTAGTAGGCACACAACAGGCACAAGTCCCGATATGGGAAAATG  446

seq1  TTTGCGTACCCAAGTTAGTGACTTGTGAAATTAGAATCTGCCACAAGTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTACCCAAGTTAGTGACTTGTGAAATTAGAATCTGCCACAAGTAA  496

seq1  TTGCTGAATCCAGAGAGAGGTTCCCCAGAGCGCCATTACCAGGTGTTGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATCCAGAGAGAGGTTCCCCAGAGCGCCATTACCAGGTGTTGGC  546

seq1  ATTTGTCTTCTCTGGCGTGTGCATGGCACTTCTCCTGCATGAATGAACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTCTCTGGCGTGTGCATGGCACTTCTCCTGCATGAATGAACAC  596

seq1  ATTAACTAACTCTCCACAGAGCCCACGAGGTGGGCCTGAGACCTCCCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAACTCTCCACAGAGCCCACGAGGTGGGCCTGAGACCTCCCTTT  646

seq1  CAGAGACAAGGAATGTGGCACCTGGAGAGGTGGGTGACTTGGCTAATTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAGGAATGTGGCACCTGGAGAGGTGGGTGACTTGGCTAATTCT  696

seq1  ATCCAGATAGTTGGAGCAGAATTAATTTTAAAGTAGGTGTGCTTGCCTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATAGTTGGAGCAGAATTAATTTTAAAGTAGGTGTGCTTGCCTGT  746

seq1  GGCACCAAGGTACAGCCTCTGACTGTACTCAGGAGAGAGAGAGAGGAAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAAGGTACAGCCTCTGACTGTACTCAGGAGAGAGAGAGAGGAAGG  796

seq1  AGAGGGGTGTGGCCCTGGGAACCATGGAAACTCTGGGAGAAGGAAAATAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTGTGGCCCTGGGAACCATGGAAACTCTGGGAGAAGGAAAATAC  846

seq1  AGAGAAAGAGATAGACATACATACAAGAAGAGGGGAGAAGGATGAGAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGATAGACATACATACAAGAAGAGGGGAGAAGGATGAGAAAG  896

seq1  AGGGAAAGCACAGGGAGGGGGAAGGAGGGAGAGGATGAGGACGAAGAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCACAGGGAGGGGGAAGGAGGGAGAGGATGAGGACGAAGAGAA  946

seq1  GAAAAGTGAAGGGGGAGGAAGAGACAGGCGAAGAGGGACACATGGAAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGAAGGGGGAGGAAGAGACAGGCGAAGAGGGACACATGGAAGAA  996

seq1  ACAGGCTTCAGGTGTGCCCTCGGAAAGAAAGACCTCAGAAGCCGAGGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTCAGGTGTGCCCTCGGAAAGAAAGACCTCAGAAGCCGAGGAAG  1046

seq1  AAAATATTCTAGAAAAGTCAAGTTTGCCTGATTTTCCAGGGTTACCACCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCTAGAAAAGTCAAGTTTGCCTGATTTTCCAGGGTTACCACCT  1096

seq1  GAGTCCTGGTCCTCACTGGACTTGATGGTTGAGACATCAGTGGTATCAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGGTCCTCACTGGACTTGATGGTTGAGACATCAGTGGTATCAAC  1146

seq1  AACAGGAGTAGTAGAAAGAGCTCTATGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  AACAGGAGTAGTAGAAAGAGCTCTATGAATTC  1178

seq1: chr1_92178970_92180064
seq2: B6Ng01-268H23.g_65_1161

seq1  GAATTCTCTGACCACAGTACAATAAAACTAGAGTCCAATAATGGACGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACCACAGTACAATAAAACTAGAGTCCAATAATGGACGTAT  50

seq1  AAACAGGAAAGTGCGGCCACTGGAAAATTAAAACAAAGCAACACAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAAGTGCGGCCACTGGAAAATTAAAACAAAGCAACACAAAACA  100

seq1  AAACATTCCCGAGTAGATACAGGGTCAGAGATGCAATCGGGATCACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCCCGAGTAGATACAGGGTCAGAGATGCAATCGGGATCACAGTA  150

seq1  ATAAACAATCTGCGTGGATTTATGCAAGAGCTTGGTCCTGGTGATGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAATCTGCGTGGATTTATGCAAGAGCTTGGTCCTGGTGATGATGG  200

seq1  GTGTCGATTACAAGGGCCGGAGCAGGAAATGTAGGGGCTGTCTAAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGATTACAAGGGCCGGAGCAGGAAATGTAGGGGCTGTCTAAAACAT  250

seq1  CCAAGAAGGGGGGCTGAGTGGGAAGGATTCCACATGGCCATTCAAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGGGGGCTGAGTGGGAAGGATTCCACATGGCCATTCAAACATC  300

seq1  TTTATGGGTGGGAAGAAGCTCATGACATTTCCAGTCAAAAAGCCAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGTGGGAAGAAGCTCATGACATTTCCAGTCAAAAAGCCAGATAA  350

seq1  GCGAATTCATCTACTCAAACTGTGGCCACTGTCCACCTGGGAGTAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTCATCTACTCAAACTGTGGCCACTGTCCACCTGGGAGTAGTAAA  400

seq1  GAAACGTTCGCGTCTATTTACGTGTGGCTATGCATCTTTCTTTTGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTTCGCGTCTATTTACGTGTGGCTATGCATCTTTCTTTTGCTCTG  450

seq1  GGATGTTTTGTACATTGTCTCGATGAGGATTAATTACGCACCCAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTGTACATTGTCTCGATGAGGATTAATTACGCACCCAAACAAA  500

seq1  CAAACATAGAAAGGGGCGGGTGTGGACAAGAGTAGGGATCTGACATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAGAAAGGGGCGGGTGTGGACAAGAGTAGGGATCTGACATATAG  550

seq1  CAGTTGATTTCCCATGGGCAAAGGAAATGGGCTCTGAAGTCACTGTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATTTCCCATGGGCAAAGGAAATGGGCTCTGAAGTCACTGTGTGG  600

seq1  GGCTTTGACCAAATGGAATAGTTTATAAAAGCTATAGTAGCAACCGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGACCAAATGGAATAGTTTATAAAAGCTATAGTAGCAACCGTGTT  650

seq1  TATTTTCTCTGCGCAGGCCCTTGTTGACAGCTTTCACTGTTCAGACGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCTGCGCAGGCCCTTGTTGACAGCTTTCACTGTTCAGACGGTG  700

seq1  ATCACAGGCGGATTGCTTGTGGGCCTCCGTTCCTGATTCCTGAGGTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGCGGATTGCTTGTGGGCCTCCGTTCCTGATTCCTGAGGTGAGC  750

seq1  TGGCAATCTTCAGAAATACCGAGGCGTGTGTAAACAAGGTTATTGGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTTCAGAAATACCGAGGCGTGTGTAAACAAGGTTATTGGTGAC  800

seq1  TGCAGGGTGAGACCGCCTACAACGCCCCCAAACACGCCTCAGTGCAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGTGAGACCGCCTACAACGCCCCCAAACACGCCTCAGTGCAGAAT  850

seq1  GTACTTGCAGAAATTTGGCTGGCAGTTCAGATCATTCAGACACCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCAGAAATTTGGCTGGCAGTTCAGATCATTCAGACACCATCCTT  900

seq1  GAAGCTTCATTACCAGGGTAGATGTGCATCAAAGAC-CCCGACTGAGGAC  949
      |||||||||||||||||||||||||||||| ||||| ||||||||| |||
seq2  GAAGCTTCATTACCAGGGTAGATGTGCATC-AAGACTCCCGACTGA-GAC  948

seq1  ACATCAGTGGACTCACCCAGTGGGAATTATCTCCTCCCCAAAGCTTCCAG  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACATCAGTGGACTCACCCAGTGGGAA-TATCTCCTCCCCAAAGCTTCCAG  997

seq1  TCCA-GGGCTGGCTGCTCCGAGCTGGGCCAATC-AATTTATCTCCTGATG  1047
      |||| |||||||||||||||||||||||||||| ||||||||  ||||||
seq2  TCCAGGGGCTGGCTGCTCCGAGCTGGGCCAATCAAATTTATCCTCTGATG  1047

seq1  CATGTCATTATCC-TTTTGCA-TGTCTGTGCCAGAAAGTTTTGTAAATGT  1095
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CATGTCATTATCCTTTTTGCATTGTCTGTGCCAGAAAGTTTTGTAAATGT  1097