BAC Information

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BAC

Clone NameB6Ng01-269A08
Chromosome1 (Build37)
Map Location 88,101,951 - 88,296,255
singlet/doubletdoublet
Overlap geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream gene1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A08.bB6Ng01-269A08.g
ACCGA071731GA071732
length2221,131
definitionB6Ng01-269A08.b B6Ng01-269A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,296,034 - 88,296,255)(88,101,951 - 88,103,058)
sequence
cagcccttggagggatagttaagagctaaaggccagcctgggctacatca
tggtgaggccctgttcaaaacaaaattataaatggaagttgctgtgtggt
gctgggcatgacacaatgttatcttgtgtttcttcctctccctaaccaca
gcaacagggtcagaatacagggaagtaaggaggagaagtggggaggggct
ggagggatggctccgtggttaa
gaattctttgtctctggctgttcctaagctctcagtagccattgtggtta
cattgtggtctacatgtgttgggactgagcacgtgactgtctcctaaaga
cagagagcccctaacttaccctcgtgggatggaagctgggaagagaccac
tgcatgggacagagagagaacaggtagcccttctggcaaccaaggactaa
ggcagactgtggttggtgactgtagttggagcccggtgtctgattggccc
cacaggagctgccatgatctctcagtcctctttgaagcactctgtccttg
tctccaggacacctgtcagcctttcctctcttccagactattcctcaatg
gtctacactctctatgcttctgtcccagcctcccatggaatgctgtcctc
cagggttctggctcagctctcagatcttctcactgtacccacaggggcac
ctcctttactccagggcttcagctaagctcttacctgagccacccgtccc
tcccagacccagcaggtgccatttcaccactcactcacccattgtgccat
ccgccggactagatgccatttattaggtataatttgcaaaagtgaagtgc
acagctcttacatacagttgcatacaggccttacattttgacagacacag
acatctgcataagtagtaccagtgatacatctttgtctttgggaggagtt
gagcaattttaagttgaggtagcatgggacctgactcagtcccatcacaa
atccaaactccatctggtcaaagctgtatggactatcttttgattcccgt
tacagctatttgcctcttagaccaggttatttttacaagagaccaatagc
taaggcaatgatggctcacgccccctaatcccagcttctttaggaaaaca
gaggcaggcagatctatgtagttgagttccaggcccagctagggactgca
ttagtgagaccttggtctccaaataaaacaaaacaaatcatcaatcatca
ataataaaattttaaaataaataaggaccagactgcatagttaaaccttc
ctctccaaaattaataatttactttaaaaatttaaataattcagggaacc
atattcaaggtcaggagcttggccaatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88296034_88296255
seq2: B6Ng01-269A08.b_54_275 (reverse)

seq1  TTAACCACGGAGCCATCCCTCCAGCCCCTCCCCACTTCTCCTCCTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACGGAGCCATCCCTCCAGCCCCTCCCCACTTCTCCTCCTTACTT  50

seq1  CCCTGTATTCTGACCCTGTTGCTGTGGTTAGGGAGAGGAAGAAACACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATTCTGACCCTGTTGCTGTGGTTAGGGAGAGGAAGAAACACAAG  100

seq1  ATAACATTGTGTCATGCCCAGCACCACACAGCAACTTCCATTTATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTGTGTCATGCCCAGCACCACACAGCAACTTCCATTTATAATTT  150

seq1  TGTTTTGAACAGGGCCTCACCATGATGTAGCCCAGGCTGGCCTTTAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAACAGGGCCTCACCATGATGTAGCCCAGGCTGGCCTTTAGCTC  200

seq1  TTAACTATCCCTCCAAGGGCTG  222
      ||||||||||||||||||||||
seq2  TTAACTATCCCTCCAAGGGCTG  222

seq1: chr1_88101951_88103058
seq2: B6Ng01-269A08.g_68_1198

seq1  GAATTCTTTGTCTCTGGCTGTTCCTAAGCTCTCAGTAGCCATTGTGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCTCTGGCTGTTCCTAAGCTCTCAGTAGCCATTGTGGTTA  50

seq1  CATTGTGGTCTACATGTGTTGGGACTGAGCACGTGACTGTCTCCTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGTCTACATGTGTTGGGACTGAGCACGTGACTGTCTCCTAAAGA  100

seq1  CAGAGAGCCCCTAACTTACCCTCGTGGGATGGAAGCTGGGAAGAGACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCCCTAACTTACCCTCGTGGGATGGAAGCTGGGAAGAGACCAC  150

seq1  TGCATGGGACAGAGAGAGAACAGGTAGCCCTTCTGGCAACCAAGGACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGACAGAGAGAGAACAGGTAGCCCTTCTGGCAACCAAGGACTAA  200

seq1  GGCAGACTGTGGTTGGTGACTGTAGTTGGAGCCCGGTGTCTGATTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTGTGGTTGGTGACTGTAGTTGGAGCCCGGTGTCTGATTGGCCC  250

seq1  CACAGGAGCTGCCATGATCTCTCAGTCCTCTTTGAAGCACTCTGTCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCTGCCATGATCTCTCAGTCCTCTTTGAAGCACTCTGTCCTTG  300

seq1  TCTCCAGGACACCTGTCAGCCTTTCCTCTCTTCCAGACTATTCCTCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGACACCTGTCAGCCTTTCCTCTCTTCCAGACTATTCCTCAATG  350

seq1  GTCTACACTCTCTATGCTTCTGTCCCAGCCTCCCATGGAATGCTGTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACTCTCTATGCTTCTGTCCCAGCCTCCCATGGAATGCTGTCCTC  400

seq1  CAGGGTTCTGGCTCAGCTCTCAGATCTTCTCACTGTACCCACAGGGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTGGCTCAGCTCTCAGATCTTCTCACTGTACCCACAGGGGCAC  450

seq1  CTCCTTTACTCCAGGGCTTCAGCTAAGCTCTTACCTGAGCCACCCGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTACTCCAGGGCTTCAGCTAAGCTCTTACCTGAGCCACCCGTCCC  500

seq1  TCCCAGACCCAGCAGGTGCCATTTCACCACTCACTCACCCATTGTGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCCAGCAGGTGCCATTTCACCACTCACTCACCCATTGTGCCAT  550

seq1  CCGCCGGACTAGATGCCATTTATTAGGTATAATTTGCAAAAGTGAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGGACTAGATGCCATTTATTAGGTATAATTTGCAAAAGTGAAGTGC  600

seq1  ACAGCTCTTACATACAGTTGCATACAGGCCTTACATTTTGACAGACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTACATACAGTTGCATACAGGCCTTACATTTTGACAGACACAG  650

seq1  ACATCTGCATAAGTAGTACCAGTGATACATC-TTGTCTTTGGGAGGAGTT  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATCTGCATAAGTAGTACCAGTGATACATCTTTGTCTTTGGGAGGAGTT  700

seq1  GAGCAA-TTTAAG-TGAGGTAGCATGGGACCTGACTCAGGTCCCATCAC-  746
      |||||| |||||| |||||||||||||||||||||||| |||||||||| 
seq2  GAGCAATTTTAAGTTGAGGTAGCATGGGACCTGACTCA-GTCCCATCACA  749

seq1  AATCCAAACTCCATCTGGTCAAAGCTGTATGGACTATC-TTTGATT-CCG  794
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AATCCAAACTCCATCTGGTCAAAGCTGTATGGACTATCTTTTGATTCCCG  799

seq1  TTACAGCTA-TTGCCTC-TAGACCAGGTTA-TTTTACAAGAGACC-ATAG  840
      ||||||||| ||||||| |||||||||||| |||||||||||||| ||||
seq2  TTACAGCTATTTGCCTCTTAGACCAGGTTATTTTTACAAGAGACCAATAG  849

seq1  CT-AGGC-ATGATGGCTCACG-CCCCTAATCCCAGCT--CTTAGG-AAAC  884
      || |||| ||||||||||||| |||||||||||||||   ||||| ||||
seq2  CTAAGGCAATGATGGCTCACGCCCCCTAATCCCAGCTTCTTTAGGAAAAC  899

seq1  AGAGGCAGGCAGATCTATGTAG-TGAGTTCCAGG-CCAGCTA-GGACTGC  931
      |||||||||||||||||||||| ||||||||||| ||||||| |||||||
seq2  AGAGGCAGGCAGATCTATGTAGTTGAGTTCCAGGCCCAGCTAGGGACTGC  949

seq1  A-TAGTGAGACCTT-GTCTCCAAAATAAAC-AAACAAATCAATCAATCAA  978
      | |||||||||||| |||||||||  |||| ||||||||| ||||||| |
seq2  ATTAGTGAGACCTTGGTCTCCAAATAAAACAAAACAAATC-ATCAATC-A  997

seq1  TCAATAATAAAATTTAAAAATAAAATAAGGACCAGGACTGCATAGTAAAA  1028
      ||||||||||||||| ||||| |||||||||||| ||||||||||| |||
seq2  TCAATAATAAAATTTTAAAAT-AAATAAGGACCA-GACTGCATAGTTAAA  1045

seq1  CCTT-CTCTCCAAAATTAATTAATTACTTTAAAAATTAAAATAAATCAGG  1077
      |||| ||||||||||||||| | |||||||||||||| |||||| |||||
seq2  CCTTCCTCTCCAAAATTAATAATTTACTTTAAAAATTTAAATAATTCAGG  1095

seq1  --ACCATA-TCAAGGACAGGAGTTTGGC--ATTTTA  1108
        |||||| |||||| |||||| |||||  ||||||
seq2  GAACCATATTCAAGGTCAGGAGCTTGGCCAATTTTA  1131