BAC Information

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BAC

Clone NameB6Ng01-269B15
Chromosome1 (Build37)
Map Location 87,730,206 - 87,879,086
singlet/doubletdoublet
Overlap geneCab39, Itm2c, 4933407L21Rik, Gpr55
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik
Downstream geneSpata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269B15.bB6Ng01-269B15.g
ACCGA071787GA071788
length1,1711,065
definitionB6Ng01-269B15.b B6Ng01-269B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,730,206 - 87,731,362)(87,878,040 - 87,879,086)
sequence
gaattcactatgtagaattatttttatttttaaaacatttttattggatt
ataaaattctaggatgatagcttagtagtttggttttcttagtagtttta
gcagttccctgctatctgctggcatgtatagtttctgtcaagaagtccca
ctggcattctttggtttgctttggctgtgcttctctccgtactgcccccc
ctcccccaacggctacttttaagattctctctctatcatcagatttaaac
agttctttgttctgaatctctgcatggactcctcctctgtgtctatatct
gcatgtgggtacatgtgcatatgtgtatacgtggagctgaggagggtatt
attgaagccctctgaggccttctgagagttctaagatctgaattctagtc
cttgtgacggcacagcaagcgctcttcaccacagccatctttttatataa
tccattcttatttcttttcctttaacttttaaaaatgggtatgtgtgttt
tgcttgcatgtagtctgttcatcaaatgcatgactggtgcccaggagcct
agaagagagcatcataccccttgtaactggggtgaccaaactgttgagag
cacacaagtaggggctggaactcaatctgggtcccccagaagactagcca
gtgcttttaagtactgagccatctctccagccatcttatttctatttctt
acacgagatttatttgccttttactagtattttttttttttttgcttagg
acttttgtttgtttttgagatagggtccctctatgtaatcctcactatcc
tggaacaacgtaaagataaggctgacctcaaactctcagacatgcctaac
tccaactcccaaagtactggaaattgaaggtgtgcacctggccaaattca
cagttgttttcattgatcacattggtcaaattttttgtctgttctttcct
ctctttgggggactaactatagctatgtatattaactaaagttaccctaa
agcttataagcaggatgttccccaacctaccgtcattcccatgattcatt
tttggtctaactgttactctttcagcagcattttcttcagcagggtcctt
aacttgcttgtacaatcaaccgtatcaactcaaacatcgaagttcctagt
ctccagtcctgttgtctttgg
gaattcttgcctgctccagctcaggactaggttcccgtttctgcaagctt
gacttgtagcttgttcacacttctttagagagggcttgggaatgacaagt
taaagctgaccacagcaatactctgaacatgagccacagctttattgggc
aaagggacagggcatatgaaatgggttttattccccctccagctaaaaag
ataatccaatcccttattacactcacaacttggatacaatcttctgggtt
accagtgtgctctttagttacattcttgccctttgcttgggagctcccag
ttggctggctgcagttcaagagcagctggcagggctgggggtttgctgtt
tcagcacatctaatggtgttctgcctttgtttggcctccgccaaggttaa
ctgtcgtcactgatatcagtaattacgccctgtgcaacccccgtttccta
atcacatacctaaaacaacagagaccttacctcaataaaatagagctgca
ccacaaaatacccatggttcaggccaagaggaagtggctagaaaactgag
ccaggtaggagttctacttgacggcagttggagaggtggtaatgacagct
gacaggtctctggggatgtgtgtgtaaggacagggggaagctgggtcagg
tggatccgggtttagcacaaacctgtgaacgttcttatctactttggggg
ttcactaacaggatattgtagggaggcagaggcaggtagatttctgagtt
caagatcagcctggtctacacagtgagttccaggacagccagggctacac
agagaaaccctattttgaaaaaaaaaaacaaaaaacaaaacaaaaaaaaa
atttctttttctcttgctttgggaagaacatctcaaagaccccaggtgga
gtcccagagatcacagttgtctatggtgctggttctgtcctgcagtcccc
aagggccctagggttttggttagactagtctttctgggtgcagttttcat
cccaactttggctgctctatgttggggcctgcgatggaacttgcctgcat
gtttgtgacttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87730206_87731362
seq2: B6Ng01-269B15.b_47_1217

seq1  GAATTCACTATGTAGAATTATTTTTATTTTTAAAACATTTTTATTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGAATTATTTTTATTTTTAAAACATTTTTATTGGATT  50

seq1  ATAAAATTCTAGGATGATAGCTTAGTAGTTTGGTTTTCTTAGTAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCTAGGATGATAGCTTAGTAGTTTGGTTTTCTTAGTAGTTTTA  100

seq1  GCAGTTCCCTGCTATCTGCTGGCATGTATAGTTTCTGTCAAGAAGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCCTGCTATCTGCTGGCATGTATAGTTTCTGTCAAGAAGTCCCA  150

seq1  CTGGCATTCTTTGGTTTGCTTTGGCTGTGCTTCTCTCCGTACTGCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCTTTGGTTTGCTTTGGCTGTGCTTCTCTCCGTACTGCCCCCC  200

seq1  CTCCCCCAACGGCTACTTTTAAGATTCTCTCTCTATCATCAGATTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAACGGCTACTTTTAAGATTCTCTCTCTATCATCAGATTTAAAC  250

seq1  AGTTCTTTGTTCTGAATCTCTGCATGGACTCCTCCTCTGTGTCTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTTCTGAATCTCTGCATGGACTCCTCCTCTGTGTCTATATCT  300

seq1  GCATGTGGGTACATGTGCATATGTGTATACGTGGAGCTGAGGAGGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGTACATGTGCATATGTGTATACGTGGAGCTGAGGAGGGTATT  350

seq1  ATTGAAGCCCTCTGAGGCCTTCTGAGAGTTCTAAGATCTGAATTCTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCCCTCTGAGGCCTTCTGAGAGTTCTAAGATCTGAATTCTAGTC  400

seq1  CTTGTGACGGCACAGCAAGCGCTCTTCACCACAGCCATCTTTTTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACGGCACAGCAAGCGCTCTTCACCACAGCCATCTTTTTATATAA  450

seq1  TCCATTCTTATTTCTTTTCCTTTAACTTTTAAAAATGGGTATGTGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTATTTCTTTTCCTTTAACTTTTAAAAATGGGTATGTGTGTTT  500

seq1  TGCTTGCATGTAGTCTGTTCATCAAATGCATGACTGGTGCCCAGGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATGTAGTCTGTTCATCAAATGCATGACTGGTGCCCAGGAGCCT  550

seq1  AGAAGAGAGCATCATACCCCTTGTAACTGGGGTGACCAAACTGTTGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGCATCATACCCCTTGTAACTGGGGTGACCAAACTGTTGAGAG  600

seq1  CACACAAGTAGGGGCTGGAACTCAATCTGGGTCCCCCAGAAGACTAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGTAGGGGCTGGAACTCAATCTGGGTCCCCCAGAAGACTAGCCA  650

seq1  GTGCTTTTAAGTACTGAGCCATCTCTCCAGCCATCTTATTTCTATTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTAAGTACTGAGCCATCTCTCCAGCCATCTTATTTCTATTTCTT  700

seq1  ACACGAGATTTATTTGCCTTTTACTAGTATTTTTTTTTTTTTTGCTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGATTTATTTGCCTTTTACTAGTATTTTTTTTTTTTTTGCTTAGG  750

seq1  ACTTTTGTTTGTTTTTGAGATAGGGTCCCTCTATGTAATCCTCACTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTGTTTTTGAGATAGGGTCCCTCTATGTAATCCTCACTATCC  800

seq1  TGGAACAACGTAAAGATAAGGCTGACCTCAAACTCTCAGACATGCCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACGTAAAGATAAGGCTGACCTCAAACTCTCAGACATGCCTAAC  850

seq1  TCCAACTCCC-AAGTACTGG-AATTGAAGGTGTGCACCTGGCC-AATTCA  897
      |||||||||| ||||||||| |||||||||||||||||||||| ||||||
seq2  TCCAACTCCCAAAGTACTGGAAATTGAAGGTGTGCACCTGGCCAAATTCA  900

seq1  CAGTTGTTTTCATTGATCACATT-GTCAAATTTTTTGTCTGTTCTTTCCT  946
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTTGTTTTCATTGATCACATTGGTCAAATTTTTTGTCTGTTCTTTCCT  950

seq1  CTCTTT-GGGGACTAACTATAGCTATGTATATT-ACTAAAGTTACCCTAA  994
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTTTGGGGGACTAACTATAGCTATGTATATTAACTAAAGTTACCCTAA  1000

seq1  AGCTTATAAGCAGGATGT--CCCCACCTA-CGTCATTCCCATGATTCATT  1041
      ||||||||||||||||||  ||| ||||| ||||||||||||||||||||
seq2  AGCTTATAAGCAGGATGTTCCCCAACCTACCGTCATTCCCATGATTCATT  1050

seq1  TTT-GTCTACTTGTTACTC-TTCAGCAGCATTTTCTTCAGCAGGGTC--T  1087
      ||| |||||  |||||||| |||||||||||||||||||||||||||  |
seq2  TTTGGTCTAACTGTTACTCTTTCAGCAGCATTTTCTTCAGCAGGGTCCTT  1100

seq1  TACCTGCTGTTAC-ATCCACCGTATCCACTTCAAACATCAGAGTTTCTAG  1136
       || ||||  ||| ||| |||||||| || |||||||||  |||| ||||
seq2  AACTTGCTTGTACAATCAACCGTATCAAC-TCAAACATCGAAGTTCCTAG  1149

seq1  TTCTCAGT-CTGTTGTCTTTGG  1157
      |   |||| |||||||||||||
seq2  TCTCCAGTCCTGTTGTCTTTGG  1171

seq1: chr1_87878040_87879086
seq2: B6Ng01-269B15.g_68_1120 (reverse)

seq1  AACATGCAGGCAAGTTCCCATCGCAGGCCCC-ACATAGAGCAGCCCAAGT  49
      |||||||||||||||| |||||||||||||| ||||||||||||| ||||
seq2  AACATGCAGGCAAGTT-CCATCGCAGGCCCCAACATAGAGCAGCCAAAGT  49

seq1  TGGGA-GAAAACTGCACCCAGAAAGACTAGTCTA--CCAAACCCTAGGGC  96
      ||||| ||||||||||||||||||||||||||||  | ||||||||||||
seq2  TGGGATGAAAACTGCACCCAGAAAGACTAGTCTAACCAAAACCCTAGGGC  99

seq1  CCTTGGGGACTGCAGGACAGAACCAGCACCATAGAC-ACTGTGATCTCTG  145
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTGGGGACTGCAGGACAGAACCAGCACCATAGACAACTGTGATCTCTG  149

seq1  GGACTCCA-CTGGGGTCTTTGAGATGTTCTT-CCAAAGCAAGAGAAAAAG  193
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GGACTCCACCTGGGGTCTTTGAGATGTTCTTCCCAAAGCAAGAGAAAAAG  199

seq1  AAA-TTTTTTTTTGTTTTGTTTTTTGTTTTTTTTTTTTCAAAATAGGGTT  242
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATTTTTTTTTTGTTTTGTTTTTTG-TTTTTTTTTTTCAAAATAGGGTT  248

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAGGCTGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAGGCTGA  298

seq1  TCTTGAACTCAGAAATCTACCTGCCTCTGCCTCCCTACAATATCCTGTTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACTCAGAAATCTACCTGCCTCTGCCTCCCTACAATATCCTGTTA  348

seq1  GTGAACCCCCAAAGTAGATAAGAACGTTCACAGGTTTGTGCTAAACCCGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCCCCAAAGTAGATAAGAACGTTCACAGGTTTGTGCTAAACCCGG  398

seq1  ATCCACCTGACCCAGCTTCCCCCTGTCCTTACACACACATCCCCAGAGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGACCCAGCTTCCCCCTGTCCTTACACACACATCCCCAGAGAC  448

seq1  CTGTCAGCTGTCATTACCACCTCTCCAACTGCCGTCAAGTAGAACTCCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCTGTCATTACCACCTCTCCAACTGCCGTCAAGTAGAACTCCTA  498

seq1  CCTGGCTCAGTTTTCTAGCCACTTCCTCTTGGCCTGAACCATGGGTATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCAGTTTTCTAGCCACTTCCTCTTGGCCTGAACCATGGGTATTT  548

seq1  TGTGGTGCAGCTCTATTTTATTGAGGTAAGGTCTCTGTTGTTTTAGGTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCAGCTCTATTTTATTGAGGTAAGGTCTCTGTTGTTTTAGGTAT  598

seq1  GTGATTAGGAAACGGGGGTTGCACAGGGCGTAATTACTGATATCAGTGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGGAAACGGGGGTTGCACAGGGCGTAATTACTGATATCAGTGAC  648

seq1  GACAGTTAACCTTGGCGGAGGCCAAACAAAGGCAGAACACCATTAGATGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTAACCTTGGCGGAGGCCAAACAAAGGCAGAACACCATTAGATGT  698

seq1  GCTGAAACAGCAAACCCCCAGCCCTGCCAGCTGCTCTTGAACTGCAGCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACAGCAAACCCCCAGCCCTGCCAGCTGCTCTTGAACTGCAGCCA  748

seq1  GCCAACTGGGAGCTCCCAAGCAAAGGGCAAGAATGTAACTAAAGAGCACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGGGAGCTCCCAAGCAAAGGGCAAGAATGTAACTAAAGAGCACA  798

seq1  CTGGTAACCCAGAAGATTGTATCCAAGTTGTGAGTGTAATAAGGGATTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACCCAGAAGATTGTATCCAAGTTGTGAGTGTAATAAGGGATTGG  848

seq1  ATTATCTTTTTAGCTGGAGGGGGAATAAAACCCATTTCATATGCCCTGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTTTTAGCTGGAGGGGGAATAAAACCCATTTCATATGCCCTGTC  898

seq1  CCTTTGCCCAATAAAGCTGTGGCTCATGTTCAGAGTATTGCTGTGGTCAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCCAATAAAGCTGTGGCTCATGTTCAGAGTATTGCTGTGGTCAG  948

seq1  CTTTAACTTGTCATTCCCAAGCCCTCTCTAAAGAAGTGTGAACAAGCTAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTTGTCATTCCCAAGCCCTCTCTAAAGAAGTGTGAACAAGCTAC  998

seq1  AAGTCAAGCTTGCAGAAACGGGAACCTAGTCCTGAGCTGGAGCAGGCAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGCTTGCAGAAACGGGAACCTAGTCCTGAGCTGGAGCAGGCAAG  1048

seq1  AATTC  1047
      |||||
seq2  AATTC  1053