BAC Information

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BAC

Clone NameB6Ng01-269F08
Chromosome1 (Build37)
Map Location 88,756,852 - 88,757,624
singlet/doubletsinglet
Overlap gene4930429A22Rik
Upstream geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneEG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269F08.bB6Ng01-269F08.g
ACCGA071960GA071961
length384778
definitionB6Ng01-269F08.b B6Ng01-269F08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aactcaggacctccagaagagcagtcagtgctcttaaccactgaaccatc
tctccaatccctactgttcacttttcttcctcctcctcctcctcctcctc
cacctcctcctcttcctcttcttcttcttcttcttcgtcttcttcttctt
cttcttcttcttcttcttcttcttcttcgtcttctgattcttccacaacc
gactcctcttgcacctctccttctactctttcaccatctggatttttttc
tttaaagggtaaaacatgaaactaacattgaagactatgttaaatgcgtg
gtcagcttcttagtcgtcagcttggttttcgggcaatttgtatatggctg
ctaatacaggttcctattattgactcgaatgaat
gaattcacagggcagataattgcactgaccaagttatgacagataatttc
taggaaggagcttgaagtagatgtgggacccaggtttctgtggccttctg
cctcatgtgcaggactgtgaacccaactctctgggaagaaacatggagaa
attagaaatgactgtcctttctttttgagttcccactatagtacaaaaca
aatggtcttaggttctttcacagaaagaaagtaaatttatgaaggttcgg
aggagatacaagaaaggggagatatggataatttcctaggagacagaaac
tgtttgctaacagatctcctggactaagaatctagagtggatagaaaggg
gcccaaggaacagctaaagagtagaagccagaggaagtggaagaacctga
agcaggaaaactgcagaggagacaagtggagtgaaaaaattcagggatgg
tggagggggggacgaaggtaaattctgcatgaaagaaaaggtagaaggct
cttagaacatccagatctcagatggcagatgctagtagtagtgtaaccac
agtgtcctttgtaaaacctactaccaagctcccaccatcccccatccttt
gctctttccttagatgactgtctgcatacggctccaatgttttgcatact
atacttactcgaagagactctcaccacttggtgaaatagtcagcttttca
gttcaactttagtttggccattcaaaaaaattcttatcttacttctcacg
ccctcctttgggggtttcacatagcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88756852_88757624
seq2: B6Ng01-269F08.g_70_847

seq1  GAATTCACAGGGCAGATAATTGCACTGACCAAGTTATGACAGATAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGCAGATAATTGCACTGACCAAGTTATGACAGATAATTTC  50

seq1  TAGGAAGGAGCTTGAAGTAGATGTGGGACCCAGGTTTCTGTGGCCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGAGCTTGAAGTAGATGTGGGACCCAGGTTTCTGTGGCCTTCTG  100

seq1  CCTCATGTGCAGGACTGTGAACCCAACTCTCTGGGAAGAAACATGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTGCAGGACTGTGAACCCAACTCTCTGGGAAGAAACATGGAGAA  150

seq1  ATTAGAAATGACTGTCCTTTCTTTTTGAGTTCCCACTATAGTACAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGACTGTCCTTTCTTTTTGAGTTCCCACTATAGTACAAAACA  200

seq1  AATGGTCTTAGGTTCTTTCACAGAAAGAAAGTAAATTTATGAAGGTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTTAGGTTCTTTCACAGAAAGAAAGTAAATTTATGAAGGTTCGG  250

seq1  AGGAGATACAAGAAAGGGGAGATATGGATAATTTCCTAGGAGACAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATACAAGAAAGGGGAGATATGGATAATTTCCTAGGAGACAGAAAC  300

seq1  TGTTTGCTAACAGATCTCCTGGACTAAGAATCTAGAGTGGATAGAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTAACAGATCTCCTGGACTAAGAATCTAGAGTGGATAGAAAGGG  350

seq1  GCCCAAGGAACAGCTAAAGAGTAGAAGCCAGAGGAAGTGGAAGAACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGAACAGCTAAAGAGTAGAAGCCAGAGGAAGTGGAAGAACCTGA  400

seq1  AGCAGGAAAACTGCAGAGGAGACAAGTGGAGTGAAAAAATTCAGGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAAACTGCAGAGGAGACAAGTGGAGTGAAAAAATTCAGGGATGG  450

seq1  TGGAGGGGGGGACGAAGGTAAATTCTGCATGAAAGAAAAGGTAGAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGGGGACGAAGGTAAATTCTGCATGAAAGAAAAGGTAGAAGGCT  500

seq1  CTTAGAACATCCAGATCTCAGATGGCAGATGCTAGTAGTAGTGTAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACATCCAGATCTCAGATGGCAGATGCTAGTAGTAGTGTAACCAC  550

seq1  AGTGTCCTTTGTAAAACCTACTACCAAGCTCCCACCATCCCCCATCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTTTGTAAAACCTACTACCAAGCTCCCACCATCCCCCATCCTTT  600

seq1  GCTCTTTCCTTAGATGACTGTCTGCATACGGCTCCAAGGTTTTGCATACT  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTCTTTCCTTAGATGACTGTCTGCATACGGCTCCAATGTTTTGCATACT  650

seq1  ATACTTACTCGAAGAGACTCTCACCACTTGGTGAAATAGTCAGCTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACTCGAAGAGACTCTCACCACTTGGTGAAATAGTCAGCTTTTCA  700

seq1  GTTCAAC-TTAG-TTGGCCATTCAAAAAAA-TCTTAGCTTAC-TCTCA-G  745
      ||||||| |||| ||||||||||||||||| ||||| ||||| ||||| |
seq2  GTTCAACTTTAGTTTGGCCATTCAAAAAAATTCTTATCTTACTTCTCACG  750

seq1  GCCTCCTTTGGGGTTTTCACATAGCTTC  773
       |||||||||||| ||||||||||||||
seq2  CCCTCCTTTGGGGGTTTCACATAGCTTC  778