BAC Information

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BAC

Clone NameB6Ng01-269H06
Chromosome1 (Build37)
Map Location 89,698,947 - 89,805,915
singlet/doubletdoublet
Overlap geneSag
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269H06.bB6Ng01-269H06.g
ACCGA072049GA072050
length1,1101,151
definitionB6Ng01-269H06.b B6Ng01-269H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,804,807 - 89,805,915)(89,698,947 - 89,700,096)
sequence
gaattcctcgttctcaggagagaccctgaggagacccaatgcagccagat
ggggctgcgccaagtcctacagcaaatgaggcagctgaggggcaggcacc
aggcaggccagatccacggtggcccttggcccacagctgcttcttgtctg
gcagaaagggagactgcaaagaacttagtcccagagcagcaggcaatgga
caagaagagaaccagaattcatctcaagctcttctggttctgggctcagt
gagaactctgggtagctcatctcattccctctggcaggtgaatggcctga
agatcaatacacagctcattaagtcatcaactggctctgcccctcccacc
ctgaccacatttttgaagagttcaaaagagaaggtaaagaagcaagatct
agaaggtaatgaatgaaccatcaaactgaaccacacgccaaaagcatgtc
aggaaacagccctctcagcattaaggcgaggccctgcactcagaatgtcc
aaaggtcaagacacgggttacagggcaaagcacagggtggacagggcaag
tatgcagcctggaagctgagatgcttggtcttcagattgcatgaagacaa
acccagctgactctaatagggctttccttactccaccaccaccaccacta
ccaacaacaacaacaacaggtgaaaaccctggtcaatgaagatatcagtg
atagagagcagaggctgatagaccttgggaacacaggatgaccacagtgg
actctcctcagttctcaatatccgggtgtcctggaatgagagcagaagaa
tgagaaaggacctaacacctaacaccaccactcatggaggagaaagcccc
accacctctaaagtctctccaaaggcccagagaagacacacaaacccacc
agagcagagcacgtaagaggctttccactcccgccaaactcaggtactcc
agtacaggcctgccgtccagctactgaatggtatccagaggaagccaagg
agggtgagaagctgcctttcttgttatccaggaataacacccaccctatc
attcactcatcagtcaggggaggtgcacagaggtaggatgagagaagctt
ctgcatacat
gaattcaaataagaagttttcccttggaaattaaaagctttggcaatttt
aggtaaaactaaataaaggggacacagaagagagcttttgggggacagag
attgaaatagaatgaagtacagtgacagatgtgtggaaatactatcatga
aatccatcgccatggtaaacatgcttcactaaaccatcagctgttactgc
tgcggcccagagacttgactttctaagtgtgtgggatctcaagtactctt
ggttttatggttgggaacggagaagaagaaggaggaagaagaggagcagc
agcagcagcaacagcaaaagtgaaaacaaaacaacaacaacaacaacaac
aacaaaaaacaggtttactaaaagcaaaggagaacagcagaccaaacggt
tggttgatgggcagagtggtgaggaataataacctggcaggcattattca
gactggatggaaagccagcagatttggggacaaatgctaacaccctcact
ccagatatcacaataagccttttgttgctactgttttattgctagagtga
tgcccactgtcagtagctatagcatcccaatcattccgagtgtgtttggg
agcgtggcttactcctcactaagtgagggcaacacagagtggtggatact
ctgcctcacaggcccagagtctaataaggaaacagaactgctagtaagga
tgaatggcaattgtgcctctggcctaggcctgtgcctggggggacttccc
tgaggcaatgacacttggtcaaacttggtagaaggtagaaggctcactta
tgttccaagatgtctgtctccatgcaagagtgacaggacctcccccagca
ggggaatcatcaggtcagggttaagaaagtctgtactgggtatagagaaa
gggcctgggatgtagagatagatgcccatcgggtgatggagttattaacc
gccctggggaagcctagctggcgtgtagaacccaatactgaacgtgtaaa
gacaaggaaagaatacaggagggcccaactagaactcttgggtgtgtaag
ggtgaagttacgggtcacgtgcagcccatccttggctgaccttctcttga
acatttcctttataacaccttatgctgctgagctattagcctgtcagtcg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89804807_89805915
seq2: B6Ng01-269H06.b_46_1155 (reverse)

seq1  ATGTATGCAG-AGC-TCTCTCATCCTACCTCTGTGCACCTCCCCTGACTG  48
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  ATGTATGCAGAAGCTTCTCTCATCCTACCTCTGTGCACCTCCCCTGACTG  50

seq1  ATGAGTTGAATGGATAGGGTGGGTGTTATTCCTGGAT-ACAAGGAAGGCA  97
      ||||| ||||| ||||||||||||||||||||||||| ||||| ||||||
seq2  ATGAG-TGAAT-GATAGGGTGGGTGTTATTCCTGGATAACAAGAAAGGCA  98

seq1  GCTTCTCACCCTCCTTGGCTTCCTCTGGATACCATTCAGTAGCTGGACGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACCCTCCTTGGCTTCCTCTGGATACCATTCAGTAGCTGGACGG  148

seq1  CAGGCCTGTACTGGAGTACCCTGAGTTTGGCGGGAGTGGAAAGCCTCTTA  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGGCCTGTACTGGAGTA-CCTGAGTTTGGCGGGAGTGGAAAGCCTCTTA  197

seq1  CGTGCTCTGCTCTGGTGGGTTTGTGTGTCTTCTCTGGGCC-TTGGAGAGA  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGTGCTCTGCTCTGGTGGGTTTGTGTGTCTTCTCTGGGCCTTTGGAGAGA  247

seq1  CTTTAGAGGTGGTGGGGCTTTCTCCTCCATGAGTGGTGGTGTTAGGTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGGTGGTGGGGCTTTCTCCTCCATGAGTGGTGGTGTTAGGTGTT  297

seq1  AGGTCCTTTCTCATTCTTCTGCTCTCATTCCAGGACACCCGGATATTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTTCTCATTCTTCTGCTCTCATTCCAGGACACCCGGATATTGAG  347

seq1  AACTGAGGAGAGTCCACTGTGGTCATCCTGTGTTCCCAAGGTCTATCAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAGAGTCCACTGTGGTCATCCTGTGTTCCCAAGGTCTATCAGC  397

seq1  CTCTGCTCTCTATCACTGATATCTTCATTGACCAGGGTTTTCACCTGTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTCTATCACTGATATCTTCATTGACCAGGGTTTTCACCTGTTG  447

seq1  TTGTTGTTGTTGGTAGTGGTGGTGGTGGTGGAGTAAGGAAAGCCCTATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGGTAGTGGTGGTGGTGGTGGAGTAAGGAAAGCCCTATTA  497

seq1  GAGTCAGCTGGGTTTGTCTTCATGCAATCTGAAGACCAAGCATCTCAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCTGGGTTTGTCTTCATGCAATCTGAAGACCAAGCATCTCAGCT  547

seq1  TCCAGGCTGCATACTTGCCCTGTCCACCCTGTGCTTTGCCCTGTAACCCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGCATACTTGCCCTGTCCACCCTGTGCTTTGCCCTGTAACCCG  597

seq1  TGTCTTGACCTTTGGACATTCTGAGTGCAGGGCCTCGCCTTAATGCTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGACCTTTGGACATTCTGAGTGCAGGGCCTCGCCTTAATGCTGAG  647

seq1  AGGGCTGTTTCCTGACATGCTTTTGGCGTGTGGTTCAGTTTGATGGTTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTTTCCTGACATGCTTTTGGCGTGTGGTTCAGTTTGATGGTTCA  697

seq1  TTCATTACCTTCTAGATCTTGCTTCTTTACCTTCTCTTTTGAACTCTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACCTTCTAGATCTTGCTTCTTTACCTTCTCTTTTGAACTCTTCA  747

seq1  AAAATGTGGTCAGGGTGGGAGGGGCAGAGCCAGTTGATGACTTAATGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGTCAGGGTGGGAGGGGCAGAGCCAGTTGATGACTTAATGAGC  797

seq1  TGTGTATTGATCTTCAGGCCATTCACCTGCCAGAGGGAATGAGATGAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGATCTTCAGGCCATTCACCTGCCAGAGGGAATGAGATGAGCT  847

seq1  ACCCAGAGTTCTCACTGAGCCCAGAACCAGAAGAGCTTGAGATGAATTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGTTCTCACTGAGCCCAGAACCAGAAGAGCTTGAGATGAATTCT  897

seq1  GGTTCTCTTCTTGTCCATTGCCTGCTGCTCTGGGACTAAGTTCTTTGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTTCTTGTCCATTGCCTGCTGCTCTGGGACTAAGTTCTTTGCAG  947

seq1  TCTCCCTTTCTGCCAGACAAGAAGCAGCTGTGGGCCAAGGGCCACCGTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTTCTGCCAGACAAGAAGCAGCTGTGGGCCAAGGGCCACCGTGG  997

seq1  ATCTGGCCTGCCTGGTGCCTGCCCCTCAGCTGCCTCATTTGCTGTAGGAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTGCCTGGTGCCTGCCCCTCAGCTGCCTCATTTGCTGTAGGAC  1047

seq1  TTGGCGCAGCCCCATCTGGCTGCATTGGGTCTCCTCAGGGTCTCTCCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCAGCCCCATCTGGCTGCATTGGGTCTCCTCAGGGTCTCTCCTGA  1097

seq1  GAACGAGGAATTC  1109
      |||||||||||||
seq2  GAACGAGGAATTC  1110

seq1: chr1_89698947_89700096
seq2: B6Ng01-269H06.g_63_1213

seq1  GAATTCAAATAAGAAGTTTTCCCTTGGAAATTAAAAGCTTTGGCAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAGAAGTTTTCCCTTGGAAATTAAAAGCTTTGGCAATTTT  50

seq1  AGGTAAAACTAAATAAAGGGGACACAGAAGAGAGCTTTTGGGGGACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACTAAATAAAGGGGACACAGAAGAGAGCTTTTGGGGGACAGAG  100

seq1  ATTGAAATAGAATGAAGTACAGTGACAGATGTGTGGAAATACTATCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAGAATGAAGTACAGTGACAGATGTGTGGAAATACTATCATGA  150

seq1  AATCCATCGCCATGGTAAACATGCTTCACTAAACCATCAGCTGTTACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCGCCATGGTAAACATGCTTCACTAAACCATCAGCTGTTACTGC  200

seq1  TGCGGCCCAGAGACTTGACTTTCTAAGTGTGTGGGATCTCAAGTACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCCCAGAGACTTGACTTTCTAAGTGTGTGGGATCTCAAGTACTCTT  250

seq1  GGTTTTATGGTTGGGAACGGAGAAGAAGAAGGAGGAAGAAGAGGAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGGTTGGGAACGGAGAAGAAGAAGGAGGAAGAAGAGGAGCAGC  300

seq1  AGCAGCAGCAACAGCAAAAGTGAAAACAAAACAACAACAACAACAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCAACAGCAAAAGTGAAAACAAAACAACAACAACAACAACAAC  350

seq1  AACAAAAAACAGGTTTACTAAAAGCAAAGGAGAACAGCAGACCAAACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAGGTTTACTAAAAGCAAAGGAGAACAGCAGACCAAACGGT  400

seq1  TGGTTGATGGGCAGAGTGGTGAGGAATAATAACCTGGCAGGCATTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATGGGCAGAGTGGTGAGGAATAATAACCTGGCAGGCATTATTCA  450

seq1  GACTGGATGGAAAGCCAGCAGATTTGGGGACAAATGCTAACACCCTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATGGAAAGCCAGCAGATTTGGGGACAAATGCTAACACCCTCACT  500

seq1  CCAGATATCACAATAAGCCTTTTGTTGCTACTGTTTTATTGCTAGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATCACAATAAGCCTTTTGTTGCTACTGTTTTATTGCTAGAGTGA  550

seq1  TGCCCACTGTCAGTAGCTATAGCATCCCAATCATTCCGAGTGTGTTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGTCAGTAGCTATAGCATCCCAATCATTCCGAGTGTGTTTGGG  600

seq1  AGCGTGGCTTACTCCTCACTAAGTGAGGGCAACACAGAGTGGTGGATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGCTTACTCCTCACTAAGTGAGGGCAACACAGAGTGGTGGATACT  650

seq1  CTGCCTCACAGGCCCAGAGTCTAATAAGGAAACAGAACTGCTAGTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCACAGGCCCAGAGTCTAATAAGGAAACAGAACTGCTAGTAAGGA  700

seq1  TGAATGGCAATTGTGCCTCTGGCCTAGGCCTGTGCCTGGGGGGACTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAATTGTGCCTCTGGCCTAGGCCTGTGCCTGGGGGGACTTCCC  750

seq1  TGAGGCAATGACACTTGGTCAAACTTGGTAGAAGGTAGAAGGCTCACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAATGACACTTGGTCAAACTTGGTAGAAGGTAGAAGGCTCACTTA  800

seq1  TGTTCCAAGATGTCTGTCTCCATGCAAGAGTGACAGGACCTCCCCCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGATGTCTGTCTCCATGCAAGAGTGACAGGACCTCCCCCAGCA  850

seq1  GGGGAATCATCAGGTCAGGGTTAAGAAAGTCTGTACTGGGTATAGAG-AA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGAATCATCAGGTCAGGGTTAAGAAAGTCTGTACTGGGTATAGAGAAA  900

seq1  GGGCCTGGGATGTAGAGATAGATGCCCATCGGGTGATGGAGTTATT-ACC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGCCTGGGATGTAGAGATAGATGCCCATCGGGTGATGGAGTTATTAACC  950

seq1  G-CCTGGGGAAGCCTAGCTGGCGTGTAGA--CCCATACTGAACGTGTAAA  995
      | |||||||||||||||||||||||||||  || ||||||||||||||||
seq2  GCCCTGGGGAAGCCTAGCTGGCGTGTAGAACCCAATACTGAACGTGTAAA  1000

seq1  GACAAGGAAAG-ATACA-GAGGGCCCAAC-AGAACTCTT-GGTGTGT-AG  1040
      ||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||
seq2  GACAAGGAAAGAATACAGGAGGGCCCAACTAGAACTCTTGGGTGTGTAAG  1050

seq1  GGTGAAGGTAAGGGCCACGTGCAGCCCAGCCCTGGGCTGACCTTTCTCCT  1090
      ||||||| || ||| |||||||||||||  ||| |||||||| |||| ||
seq2  GGTGAAGTTACGGGTCACGTGCAGCCCA-TCCTTGGCTGACC-TTCT-CT  1097

seq1  TGACCTTTTTCTTTATATAACACCCTAATGCTGCTGAGCTTAATCAGGCC  1140
      ||| | ||| |||  ||||||| ||| |||||||||||||  || | |||
seq2  TGAACATTTCCTT--TATAACA-CCTTATGCTGCTGAGCT--ATTA-GCC  1141

seq1  TGTCAGTCGA  1150
      ||||||||||
seq2  TGTCAGTCGA  1151