BAC Information

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BAC

Clone NameB6Ng01-270M16
Chromosome1 (Build37)
Map Location 95,956,959 - 95,958,157
singlet/doubletsinglet
Overlap genenone
Upstream geneKif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1
Downstream geneLOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270M16.bB6Ng01-270M16.g
ACCGA073041GA073042
length1,1881,142
definitionB6Ng01-270M16.b B6Ng01-270M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggtgggatttttgggatcacttaagtatactatcatatcat
ctgcaaatagtcatattttgacttcttcctttccaatttgtatccctttg
acctccttttggtgtctaattgctctagctagaactacaagtagttctat
ctattgaattaatagggagagagtgggcagccttgtctagtccctggttt
tagtgggattgcttcaagtttctttccatttagtttgacgttggctactg
gtttgctctatattgcttttactatgttaaggcataggccttgaattcat
gatataagatgctatatttcttaatatgtaatatatgttatattacatat
aatataatttcttgtttggcataagttaccagcttatgcaagaccttatg
atcccaccccagctattgtttctgtcttctccctccatcagtcctacccc
tcgacacattgccccttgagacccatatttccataggctggagtcaggtg
cataggacttggattgagatttattgggactgggtttatagatgagttta
tgagattggggacagaatctgggttttctgtgagagcagcaagtactcca
ggccactcactcatttccttacctctagaaactgtgcctttatgatttag
gtattttaatagaaatctttggtatttcttatcaataaaaacttcaaggg
tgtggggtgatcatgtatgttagtgcacaagtgtggtgttgctccagtga
gatatcactgcagtcttttctgcttctctgatgcacaatagttgccatgg
catctaattggctgtcacttagatatgggatgcttctttgctgagtatat
gaagccctcagtctattccacagagcccagtagcaacatggacaggcctg
aggcagatgtcttgaggcaggacatctgcctagctgatggcagagaggaa
gcctgctgtcatctgggctctgcatcctcaggaaagcctggtttagggac
acctggacagtggctattttcagtacatctgaggtgtgaaaagctgggag
gcctcctgctgtttctgggagatgatgtgccttgtttgagcctgatgatt
tgggtcccatgcctagttctagtgtggccagaataagatgcctgcttggg
tgaattgtgcctgaattactgttcagacatgtgcggtg
gaattctcacctgaggaataccggatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctttcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagagtgaagactgaagtgtggaatctatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aagaatggaccatgtagagactgccatatccagggatccaccccataatc
ggcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccatgatgtagctgtctcttgtgagactatgccggggtctagcaac
acagaagttgatgctcacagtcagctaatggatgatcatagggctccgat
gagagctagagagtagccgagcagctaagggatctgcacctagtagttga
cacattaggactacagtacccagactgtgactctagctgcatattaacaa
agatgccattgcgcatcatgatagaaggcctatgaactgcactttaatgc
catacggtactgctatggtatgctgctaggtatgggctatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95956959_95958157
seq2: B6Ng01-270M16.b_43_1230

seq1  GAATTCTCTGGTGGGATTTTTGGGATCACTTAAGTATACTATCATATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGGGATTTTTGGGATCACTTAAGTATACTATCATATCAT  50

seq1  CTGCAAATAGTCATATTTTGACTTCTTCCTTTCCAATTTGTATCCCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAGTCATATTTTGACTTCTTCCTTTCCAATTTGTATCCCTTTG  100

seq1  ACCTCCTTTTGGTGTCTAATTGCTCTAGCTAGAACTACAAGTAGTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTTGGTGTCTAATTGCTCTAGCTAGAACTACAAGTAGTTCTAT  150

seq1  CTATTGAATTAATAGGGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAATTAATAGGGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGGTTT  200

seq1  TAGTGGGATTGCTTCAAGTTTCTTTCCATTTAGTTTGACGTTGGCTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGATTGCTTCAAGTTTCTTTCCATTTAGTTTGACGTTGGCTACTG  250

seq1  GTTTGCTCTATATTGCTTTTACTATGTTAAGGCATAGGCCTTGAATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCTATATTGCTTTTACTATGTTAAGGCATAGGCCTTGAATTCAT  300

seq1  GATATAAGATGCTATATTTCTTAATATGTAATATATGTTATATTACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGATGCTATATTTCTTAATATGTAATATATGTTATATTACATAT  350

seq1  AATATAATTTCTTGTTTGGCATAAGTTACCAGCTTATGCAAGACCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTTCTTGTTTGGCATAAGTTACCAGCTTATGCAAGACCTTATG  400

seq1  ATCCCACCCCAGCTATTGTTTCTGTCTTCTCCCTCCATCAGTCCTACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCCCAGCTATTGTTTCTGTCTTCTCCCTCCATCAGTCCTACCCC  450

seq1  TCGACACATTGCCCCTTGAGACCCATATTTCCATAGGCTGGAGTCAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACACATTGCCCCTTGAGACCCATATTTCCATAGGCTGGAGTCAGGTG  500

seq1  CATAGGACTTGGATTGAGATTTATTGGGACTGGGTTTATAGATGAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTTGGATTGAGATTTATTGGGACTGGGTTTATAGATGAGTTTA  550

seq1  TGAGATTGGGGACAGAATCTGGGTTTTCTGTGAGAGCAGCAAGTACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGGGGACAGAATCTGGGTTTTCTGTGAGAGCAGCAAGTACTCCA  600

seq1  GGCCACTCACTCATTTCCTTACCTCTAGAAACTGTGCCTTTATGATTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCACTCATTTCCTTACCTCTAGAAACTGTGCCTTTATGATTTAG  650

seq1  GTATTTTAATAGAAATCTTTGGTATTTCTTATCAATAAAAACTTCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAATAGAAATCTTTGGTATTTCTTATCAATAAAAACTTCAAGGG  700

seq1  TGTGGGGTGATCATGTATGTTAGTGCACAAGTGTGGTGTTGCTCCAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGATCATGTATGTTAGTGCACAAGTGTGGTGTTGCTCCAGTGA  750

seq1  GATATCACTGCAGTCTTTTCTGCTTCTCTGATGCACAATAGTTGCCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACTGCAGTCTTTTCTGCTTCTCTGATGCACAATAGTTGCCATGG  800

seq1  CATCTAATTGGCTGTCACTTAGATATGGGATGCTTCTTTGCTGAGTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATTGGCTGTCACTTAGATATGGGATGCTTCTTTGCTGAGTATAT  850

seq1  GAAGCCCTCAGTCTATTCCACAGAGCCCAGTAGCAACATGGACAGGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCAGTCTATTCCACAGAGCCCAGTAGCAACATGGACAGGCCTG  900

seq1  AGGCAGATGTCTTGAGGCAGGACATCTGCCTAGCTGATGGCAGAGAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATGTCTTGAGGCAGGACATCTGCCTAGCTGATGGCAGAGAGGAA  950

seq1  GCCTGCTGTCATCTGGGCTCTGCATCCTCAGGAAAGCCTGGTTTAGGGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGTCATCTGGGCTCTGCATCCTCAGGAAAGCCTGGTTTAGGGAC  1000

seq1  ACCTGGACAGTGGCTATTTTCAGTACCATCTGAAGGTGTGGAAAAGGCTG  1050
      ||||||||||||||||||||||||| |||||| |||||||  ||| ||||
seq2  ACCTGGACAGTGGCTATTTTCAGTA-CATCTG-AGGTGTG--AAAAGCTG  1046

seq1  GGAGGCCTCCTGCTGGTTTCTGGGAGATGAATGTGCCTTGTTTGAGCCTT  1100
      |||||||||||||| |||||||||||||| |||||||||||||||||| |
seq2  GGAGGCCTCCTGCT-GTTTCTGGGAGATG-ATGTGCCTTGTTTGAGCC-T  1093

seq1  GATTGATTTGGTCCCCAATGCTAG-TCTAGTTGTGGCAGGGAATAGATG-  1148
      || ||||||||  ||||   |||| ||||| ||||||  | |  ||||| 
seq2  GA-TGATTTGGGTCCCATGCCTAGTTCTAG-TGTGGCCAGAATAAGATGC  1141

seq1  CTGCTGGGGTGGGAATTGGGGCTAGATTAATCTGTCTCAGACATGTG-GG  1197
      ||||| ||||  |||||| | ||  ||||  |||| ||||||||||| ||
seq2  CTGCTTGGGT--GAATTGTGCCTGAATTA--CTGT-TCAGACATGTGCGG  1186

seq1  TG  1199
      ||
seq2  TG  1188