BAC Information

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BAC

Clone NameB6Ng01-271I03
Chromosome1 (Build37)
Map Location 84,984,097 - 85,068,325
singlet/doubletdoublet
Overlap geneLOC100039695, EG665317, LOC100039723
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
Downstream geneA530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271I03.bB6Ng01-271I03.g
ACCGA073570GA073571
length1,035774
definitionB6Ng01-271I03.b B6Ng01-271I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,984,097 - 84,985,122)(85,067,551 - 85,068,325)
sequence
gaattcctaccttcgtgtggccatctgagggacagccatgagacatgctt
gaggactgggctggtgagtgagttggagaagggaagtagccaaggtgaca
aggccaaccgttctgtgcccagggccatttctgccttcaggagaagccgg
tccttctgcatcagtcttggtggtttgctgtatcagctgactgctggacc
actttccttcccaggtccttctccccctccacatgcaaccgatggaattc
cccaggtttccatccttagctacagtctgtccagatgactagagtcactc
tcctgctgcagtttccacctgtgtccttagcttcatgtgcctcgcctctc
cttagctcctcgggttctaatgctcagccacgtctcctctgcaacccacc
ctccaatcaccctttgctccttctttggaacttccattttatataacagt
ctccatacgccacagacctggggcttcagcctgcctttgtcttatctctc
accttccaaatccatcccatcgtcagtcctatggatactcactttaagtt
tattcaaatttttcctgctccagtaaggtccatcaaatataccaaatagg
gtgttggtaattttttaatggtcatatacgaggaagtattgaaggctgcc
actcagctccatgaagatccttaaagcagagggggaaagaacaggagctg
accaccacaatggactgtttctgaaagtcccctctcccctaaatcctgat
agatgggaaatataactgtcacttggcacaaatgtgtgttgaatttcaag
cttaaaaggctctgtacattctgattggggtcacaggttcagctcccgat
cactgttctgtatccccgatcaatcaatagatgcttgattacaataagtt
tttttgttgtggccatagacctggtatttgagttgtgttggatctaagca
gactttgaccgaaactcttcttcttcataagcatgaggttaataaacagt
tcagcattacttgtaagaatgtgctgacccccctt
gaattccatcctttgcatgtggaggaagagaaggaccagggaaggaaagt
ggtctagctgtcaggtgatagcgcaaaccaccaagactgatgcagaagga
ccaacttctcctgagggcagagatggccctggtcacagaatggttggccc
tgtcaccttggctacttcccttctcccactcactcacccagtggtggccc
agacctcaagccacgcttgtatttgtcccttagacaatcacaggaaagta
gaaaatttccaacagcccatggactatgtagaggtgtttcttcccctctt
ttacaccatatcttcttccttctcttcctctcttctttccctgatatttt
tgagatagggtctcatgtagaccaaaataaccacaaactcactatgtagc
caagggtcctgaccttcctgtcttgactttcctactatgtgccaccatac
ctgaattgtgatttttctgtgttcctatagaaccacctctcatttctcaa
actgtcaccattctccttgaagttgggaccaggaatgcatgtgttcctct
ccacatgttattctgattcttcctggttcccgtgttaacagtagtcatag
gaaaccccagcaacataccaagggaggttgtgaggaactcatttgaatac
ctttctgaatggcagaaacaaaacccactaaaactctcccatgaggacag
agtggggcaggaaactaatagaccatcctaggctctctcaactatttatg
gtttttgtctgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84984097_84985122
seq2: B6Ng01-271I03.b_43_1077

seq1  GAATTCCTACCTTCTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTT  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCTTCGTGTGGCCATCTGAGGGACAGCCATGAGACATGCTT  50

seq1  GAGGACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGAC  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGGCT-GGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGAC  99

seq1  AAGGCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGGCCAACCGTTCTGTGCCCAGGGCCATTTCTGCCTTCAGGAGAAGCCG  149

seq1  GTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGAC  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCAGCTGACTGCTGGAC  199

seq1  CACTTTCCTTCCCAGGTCCTTCTCCCCCTCCACATGCAACCGATGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCTTCCCAGGTCCTTCTCCCCCTCCACATGCAACCGATGGAATT  249

seq1  CCCCAGGTTTCCATCCTTAGCTACAGTCTGTCCAGATGACTAGAGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTTTCCATCCTTAGCTACAGTCTGTCCAGATGACTAGAGTCACT  299

seq1  CTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCATGTGCCTCGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCATGTGCCTCGCCTCT  349

seq1  CCTTAGCTCCTCGGGTTCTAATGCTCAGCCACGTCTCCTCTGCAACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCCTCGGGTTCTAATGCTCAGCCACGTCTCCTCTGCAACCCAC  399

seq1  CCTCCAATCGCGCTCTGCTCCTTCTTTGGAACTTCCATTTTATATAACAG  450
      ||||||||| | || |||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCACCCTTTGCTCCTTCTTTGGAACTTCCATTTTATATAACAG  449

seq1  GCTCCATACGCCACAGACCTGGGGCTTCAGCCTGCCTTTGTCTTATCTCT  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATACGCCACAGACCTGGGGCTTCAGCCTGCCTTTGTCTTATCTCT  499

seq1  CACCTTCCAAATCCATCCCATCGTCAGTCCTATAGATACTCACTTTAAGT  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACCTTCCAAATCCATCCCATCGTCAGTCCTATGGATACTCACTTTAAGT  549

seq1  TTATTCAAATTTTTCCTGCTCCAGTAAGGTCCATCAAATATACCAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAATTTTTCCTGCTCCAGTAAGGTCCATCAAATATACCAAATAG  599

seq1  GGTGTTGGTAATTTTTTAATGGTCATATACGAGGAAGTATTGAAGGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGTAATTTTTTAATGGTCATATACGAGGAAGTATTGAAGGCTGC  649

seq1  CACTCAGCTCCATTGAGATCCTTAAAGCAGAGGGGGAAAGAACAGGAGCT  700
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CACTCAGCTCCATGAAGATCCTTAAAGCAGAGGGGGAAAGAACAGGAGCT  699

seq1  GACCACCACAATGGACTGTTTCTGAAAGTCCCCTCT-CCCTAAATCCTGA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACCACCACAATGGACTGTTTCTGAAAGTCCCCTCTCCCCTAAATCCTGA  749

seq1  TAGATGGGAAATGTAACTGTCACTTGGCACAGATGTGTG-TGAATTTCAA  798
      |||||||||||| |||||||||||||||||| ||||||| ||||||||||
seq2  TAGATGGGAAATATAACTGTCACTTGGCACAAATGTGTGTTGAATTTCAA  799

seq1  GCTTAAAA-GCTCTGTACATTCTGATTGGGGTCACAGG-TCAGCTCCCGA  846
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTAAAAGGCTCTGTACATTCTGATTGGGGTCACAGGTTCAGCTCCCGA  849

seq1  TCACTGTTCTGTATCCCCGATCAATCAATAGATGCTTGATTACAATAAG-  895
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCACTGTTCTGTATCCCCGATCAATCAATAGATGCTTGATTACAATAAGT  899

seq1  TTTTTTGTTGTGGCCATAGACCTGGTGTTTGAGTTGTGTTGGATCTAAGC  945
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTGTTGTGGCCATAGACCTGGTATTTGAGTTGTGTTGGATCTAAGC  949

seq1  AGACTTTG-CCGTAACTCTTC-TCTTCA-AAGCA-GAGGCTAATAAACAG  991
      |||||||| ||| |||||||| |||||| ||||| |||| ||||||||||
seq2  AGACTTTGACCGAAACTCTTCTTCTTCATAAGCATGAGGTTAATAAACAG  999

seq1  -TCAGCATTACTGTCAAGAAAGTGCTGACCCCCCTT  1026
       |||||||||||   ||||| |||||||||||||||
seq2  TTCAGCATTACTTGTAAGAATGTGCTGACCCCCCTT  1035

seq1: chr1_85067551_85068325
seq2: B6Ng01-271I03.g_62_835 (reverse)

seq1  ACACACACACACACAGACAAAAACCATAAATAGTTGAGAGAGCCTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGACAAAAACCATAAATAGTTGAGAGAGCCTAGGAT  50

seq1  GGTCTATTAGTTCCCTGCCCCACTCTGTCCTCATGGGAGAGTTTTCGTGG  100
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  GGTCTATTAGTTTCCTGCCCCACTCTGTCCTCATGGGAGAGTTTTAGTGG  100

seq1  GTTTTGTTTCTGCCATTCAGAAAGGTATTCAAATGAGTTCCTCACAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTCTGCCATTCAGAAAGGTATTCAAATGAGTTCCTCACAACCT  150

seq1  CCCTTGGTATGTTGCTGGGGTTTCCTATGACTACTGTTAACACGGGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTATGTTGCTGGGGTTTCCTATGACTACTGTTAACACGGGAACC  200

seq1  AGGAAGAATCAGAATAACATGTGGAGAGGAACACATGCATTCCTGGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATCAGAATAACATGTGGAGAGGAACACATGCATTCCTGGTCCC  250

seq1  AACTTCAAGGAGAATGGTGACAGTTTGAGAAATGAGAGGTGGTTCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGGAGAATGGTGACAGTTTGAGAAATGAGAGGTGGTTCTATAG  300

seq1  GAACACAGAAAAATCACAATTCAGGTATGGTGGCACATAGTAGGAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAAAAATCACAATTCAGGTATGGTGGCACATAGTAGGAAAGTC  350

seq1  AAGACGGGAAGGTCAGGACCCTTGGCTACATAGTGAGTTTGTGGTTATTT  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGAAGGTCAGGACCCTTGGCTACATAGTGAGTTTGTGGTTATTT  400

seq1  TGGTCTACATGAGACCCTATCTCAAAAATATCAGGGAAAGAAGAGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACATGAGACCCTATCTCAAAAATATCAGGGAAAGAAGAGAGGAA  450

seq1  GAGAAGGAAGAAGATATGGTGTAAAAGAGGGGAAGAAACACCTCTACGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAAGGAAGAAGATATGGTGTAAAAGAGGGGAAGAAACACCTCTACATA  500

seq1  GCCCATGGGCTGTTGGAAATTTTCTACTTTCCTGTGATTGTCTAAGGGAC  550
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGCTGTTGGAAATTTTCTACTTTCCTGTGATTGTCTAAGGGAC  550

seq1  AAATACAAGCGTGGCTTGAGGTCTGGGCCACCACTGGGTGAGTGAGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGCGTGGCTTGAGGTCTGGGCCACCACTGGGTGAGTGAGTGGG  600

seq1  AGAAGGGAAGTAGCCAAGGTGACAGGGCCAACCATTCTGTGACCAGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAGTAGCCAAGGTGACAGGGCCAACCATTCTGTGACCAGGGCC  650

seq1  ATCTCTGCCCTCAGGAGAAGTTGGTCCTTCTGCATCAGTCTTGTTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTCTGCCCTCAGGAGAAGTTGGTCCTTCTGCATCAGTCTTGGTGGTTT  700

seq1  GCCTTTATCACCTGACTGCTGGACCACTTTCCTTCCCTGGTCCTTCTCCT  750
      | |  ||||||||||| ||| ||||||||||||||||||||||||||| |
seq2  G-CGCTATCACCTGACAGCTAGACCACTTTCCTTCCCTGGTCCTTCTCTT  749

seq1  CCTCCACATGCAAAGGATGGAATTC  775
      |||||||||||||||||||||||||
seq2  CCTCCACATGCAAAGGATGGAATTC  774