BAC Information

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BAC

Clone NameB6Ng01-271L04
Chromosome1 (Build37)5 (Build37)
Map Location 96,927,711 - 96,928,073141,821,035 - 141,822,171
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271L04.bB6Ng01-271L04.g
ACCGA073712GA073713
length5801,137
definitionB6Ng01-271L04.b B6Ng01-271L04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,927,711 - 96,928,073)(141,821,035 - 141,822,171)
sequence
gaattcctaggcaactggatggacctggagggcatcatcctgagtgaggt
aacccaatcacaaaagaactcacatgatatgtactcactgataagtggat
attagcccagaaacttagaatacccaagatacaagatacaatttgcaaaa
cacatgaaactcaagaagaatgaagaccaaagtgtggacactttgcccct
tcttagaattgggaacaaaacacctatggaaggagttacagagacaaagt
ttggagctgagatgaaaggatggaccatctagagacttccatacctgggg
atccatcccataatcagcctccaaacactgacaccattgcatacactagc
aagattttgctgaaaggaccttatgaggctatgccggggcctagcaaaca
cagaagaggatgctcacagtcagctattggatggatcacagggcccccaa
tggaggagctagagaaagtacccaaggagctgaaggggtctgcaacccta
taggtggaacaacaatatgaactaaccagtacccctcagagctcgtctct
agctgcatatgtatcaaaagatggcctagt

gaattctttaatttcacagggaaacgagtgtctgccatgagtcgatatga
aagcctgggtaggaggagtcactaaagtgcttggttgcccagttctttct
gtggtggcttgcttccctttgtgggcttctctgggtctgctcactgtttc
attgggttgagggtgtgcactggacatgaggaatctctgaagtcgggttg
gtttccagtgggggcctccagctcccaaaagcatcctctacccatgtctt
ctggatgtttagattggtgtctttccttcatgccgtttcttcaccttgaa
agtttggtgctgggtatgtttctgtgcctattttcaagggtctatcacct
agtgcatttcctcagctgtgtaacattttcttgtcacctggtggcaaacg
caggagctcaacttcaggtgactggatggggcagagcctttacttaaccg
tcttactggtggaggggtctgctgcctgcccccttcagaacttgctgtca
gtaagctgctctgggcctgacttcccaccctttcccctgtggcagtctga
gccagcccgaggtagggatgaggcctccagcctctggctaattacttggc
cagtcttcttccagctcgtctaggctgtgctgcactgataatgggattat
tcttagctgctgctggggagactttgcagctgacacaggctccgtctagt
tcttcagatttaccatcatgattcctttcagtctcagagttttccagaaa
tccactcagctattccataagtacttattgtgcatggcagtgtgctgggt
attaggaaatacaggttaaaaaagaaaagagcgactacccatggagggga
ggaaaacaagctttaaaacagttaactcatatactccaaccacaggttct
gtgaggcacagaaaatgtcacccctagggttattcatggaaatcagcctg
gagccagtgataactgaccaaattagaaggagagaaagaatgacctaatg
atgagactcggaagactaatagaagagccaggaccacactgcctggattg
atcctcaatagtatttacctctttactgtgattggtttcaatttggaggg
ctcttccaaataaaggaactggaaaggagaaaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96927711_96928073
seq2: B6Ng01-271L04.b_286_624 (reverse)

seq1  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGT  50
      |||||||||||||||||||||||||||||||||| | ||  ||  |||||
seq2  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGACGAGCTCTGAGGGGT  50

seq1  ACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTA  100
      ||||||||||||||| |||||||||||||||||||||||||| ||||| |
seq2  ACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCA  100

seq1  GCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCAT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCAT  150

seq1  CCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCCT  200
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CCAATAGCTGACTGTGAGCATCCTCTTCTGTGTTTGCTAGGCCCCGGCAT  200

seq1  AGTCTCACAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTA  250
      || |||| ||                ||||||||||||||||||||||||
seq2  AGCCTCATAA----------------GGTCCTTTCAGCAAAATCTTGCTA  234

seq1  GTGTATGCAATGGTGTCATGGTGTCATCGTTTAGAGGCTGATTATGGGAT  300
      ||||||||||||||||||    ||    |||| |||||||||||||||||
seq2  GTGTATGCAATGGTGTCA----GT----GTTTGGAGGCTGATTATGGGAT  276

seq1  GGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCT  350
      |||||||  | ||||| |||||||||||||||||||||||  ||||||||
seq2  GGATCCCCAGGTATGGAAGTCTCTAGATGGTCCATCCTTTCATCTCAGCT  326

seq1  CCAAACTTTGTCT  363
      |||||||||||||
seq2  CCAAACTTTGTCT  339


seq1: chr5_141821035_141822171
seq2: B6Ng01-271L04.g_65_1201

seq1  GAATTCTTTAATTTCACAGGGAAACGAGTGTCTGCCATGAGTCGATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATTTCACAGGGAAACGAGTGTCTGCCATGAGTCGATATGA  50

seq1  AAGCCTGGGTAGGAGGAGTCACTAAAGTGCTTGGTTGCCCAGTTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGTAGGAGGAGTCACTAAAGTGCTTGGTTGCCCAGTTCTTTCT  100

seq1  GTGGTGGCTTGCTTCCCTTTGTGGGCTTCTCTGGGTCTGCTCACTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTTGCTTCCCTTTGTGGGCTTCTCTGGGTCTGCTCACTGTTTC  150

seq1  ATTGGGTTGAGGGTGTGCACTGGACATGAGGAATCTCTGAAGTCGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTGAGGGTGTGCACTGGACATGAGGAATCTCTGAAGTCGGGTTG  200

seq1  GTTTCCAGTGGGGGCCTCCAGCTCCCAAAAGCATCCTCTACCCATGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGTGGGGGCCTCCAGCTCCCAAAAGCATCCTCTACCCATGTCTT  250

seq1  CTGGATGTTTAGATTGGTGTCTTTCCTTCATGCCGTTTCTTCACCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTTAGATTGGTGTCTTTCCTTCATGCCGTTTCTTCACCTTGAA  300

seq1  AGTTTGGTGCTGGGTATGTTTCTGTGCCTATTTTCAAGGGTCTATCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTGCTGGGTATGTTTCTGTGCCTATTTTCAAGGGTCTATCACCT  350

seq1  AGTGCATTTCCTCAGCTGTGTAACATTTTCTTGTCACCTGGTGGCAAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTTCCTCAGCTGTGTAACATTTTCTTGTCACCTGGTGGCAAACG  400

seq1  CAGGAGCTCAACTTCAGGTGACTGGATGGGGCAGAGCCTTTACTTAACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTCAACTTCAGGTGACTGGATGGGGCAGAGCCTTTACTTAACCG  450

seq1  TCTTACTGGTGGAGGGGTCTGCTGCCTGCCCCCTTCAGAACTTGCTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGGTGGAGGGGTCTGCTGCCTGCCCCCTTCAGAACTTGCTGTCA  500

seq1  GTAAGCTGCTCTGGGCCTGACTTCCCACCCTTTCCCCTGTGGCAGTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGCTCTGGGCCTGACTTCCCACCCTTTCCCCTGTGGCAGTCTGA  550

seq1  GCCAGCCCGAGGTAGGGATGAGGCCTCCAGCCTCTGGCTAATTACTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCGAGGTAGGGATGAGGCCTCCAGCCTCTGGCTAATTACTTGGC  600

seq1  CAGTCTTCTTCCAGCTCGTCTAGGCTGTGCTGCACTGATAATGGGATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTTCCAGCTCGTCTAGGCTGTGCTGCACTGATAATGGGATTAT  650

seq1  TCTTAGCTGCTGCTGGGGAGACTTTGCAGCTGACACAGGCTCCGTCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTGCTGCTGGGGAGACTTTGCAGCTGACACAGGCTCCGTCTAGT  700

seq1  TCTTCAGATTTACCATCATGATTCCTTTCAGTCTCAGAGTTTTCCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATTTACCATCATGATTCCTTTCAGTCTCAGAGTTTTCCAGAAA  750

seq1  TCCACTCAGCTATTCCATAAGTACTTATTGTGCATGGCAGTGTGCTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCAGCTATTCCATAAGTACTTATTGTGCATGGCAGTGTGCTGGGT  800

seq1  ATTAGGAAATACAGGTTAAAAAAGAAAAGAGCGACTACCCATGGAGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAATACAGGTTAAAAAAGAAAAGAGCGACTACCCATGGAGGGGA  850

seq1  GG-AAACAAGCTTTAAAACAGTTAACTCATATACTCCAACCACAGGTTCT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAAGCTTTAAAACAGTTAACTCATATACTCCAACCACAGGTTCT  900

seq1  GTGAGGCACAGAAAATGTCA-CCCTAGGGTTA-TCATGGAAATCAGCCTG  947
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTGAGGCACAGAAAATGTCACCCCTAGGGTTATTCATGGAAATCAGCCTG  950

seq1  GAGCAAGTGATAACTGACCAAATTAGAAAGGAAGAGAAAGAATGACCTAA  997
      |||| |||||||||||||||||||||||  | ||||||||||||||||||
seq2  GAGCCAGTGATAACTGACCAAATTAGAA--GGAGAGAAAGAATGACCTAA  998

seq1  TGATGAAGACTCGGGAGAACTTATAGAAGGAGCAGGACACAC-CTGCTGG  1046
      ||||| |||||||| || ||| |||||||   |||||| ||| ||||  |
seq2  TGATG-AGACTCGGAAG-ACTAATAGAAGAGCCAGGAC-CACACTGCCTG  1045

seq1  TATTGATCCTC-ATAGTTATTTA-CTC-TTACTGTGGATTTGTTTTCATT  1093
       |||||||||| |||| |||||| ||| ||||||| |||| ||||  |||
seq2  GATTGATCCTCAATAG-TATTTACCTCTTTACTGT-GATTGGTTTCAATT  1093

seq1  TTGAGTG-TCTTCAATATAAAGGAACTTGAGAAGGAGAAAAATGG  1137
      | ||| | ||||| | ||||||||||| || ||||||||||||||
seq2  TGGAGGGCTCTTCCAAATAAAGGAACTGGA-AAGGAGAAAAATGG  1137


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