BAC Information

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BAC

Clone NameB6Ng01-272M05
Chromosome1 (Build37)
Map Location 49,622,986 - 49,744,835
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272M05.bB6Ng01-272M05.g
ACCGA074507GA074508
length981985
definitionB6Ng01-272M05.b B6Ng01-272M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,744,276 - 49,744,835)(49,622,986 - 49,623,961)
sequence
gaattcattcaatatatataatttttggcaactgttctttcatttttcaa
ataatttatagactaaaagtaccctaaacatgggaactgaagttaaaata
aaattgaaaatataaacctggcaacaatttttttaaaaacttcaatttat
tatattaaaatgtgagaatcagtattttagaagctcaatattttatataa
ttatataaataaaaacatcaacaaataaaaatataatcatcttaattcat
gtcaaaaattagttattctaccttaaataattttgtaatatcaaatctca
aagtcctgttaaacaaaaatattttattaaaaagtataacaaatggaacc
catttgttaactgattaagaaatgaaacactgctaggctgtacaaggtcc
ggacactaaacagtccttacatcttatagaaaactaaataatcctgttct
gttcgcagcccctaacaacaaaattactcaatgataaatctggagtattc
atagatcactcttttgcttagtcatcatcagagcttccttctgctgtaga
tgggggaaaatgcacagacccaaagctagacaatgtacatgtagtgaaag
ttcttgaaataatactcagttctgaatgggatgcttctatcaaatgcttt
ccatcaagaataagggactctgtagaagaagagacagaaaaatcttaaga
gccaatggagatggaagacacaaggaaacaagtgtttcctcatataccag
gactgaaacatatatgaacactttctctaacacagactgcatttcctttt
gataattgctcaaaaggaaaaaaaaaagtttctccagcagagactcaata
gatataatcacaacacacaagggcagtcccctatgtctagcagtagatga
ccaacacaaacaaacccagtagttgtttcatgattttggctgaaatgctt
atatatatatatatatatatatatatatata

gaattctatatggacaaagatgagagaacatgtggaagggttcaccgaga
ggttagaaatggcttaaatatgattaatcaggtggaaagaaggttactag
gctggtatacaagacctgcttcctggtctagccaggaatatgggaagata
ctatatcagagtctataaattggcatggtacagaatttagtgcccggatt
aggctgagtaactggatgtgaaacccaggctagatgtgaatgtttgagaa
gtgtgcatggatacagagggtccaggaaaatttcctgggtacacatccag
tagaagcaagtgggaggtctgactggaaggactggttgggtattatgcag
ccagataggaatagttctgtaagaatcctagaggatggattcagcaaagg
tagggatgaacaaactagaccatgccagttgatgtgggatccgtgtagat
ttgttagtgtgaggtgaaggtttctgtggcagtcagtgttctattgcaat
gaatgaactccatgcccaaggcaattcctctaagagaaataatttaatgt
ggttttatttatatcttcagagaattaatccattatcattatggtagaaa
gcattgcagcacacattcagatatattgttcagaggtagctgagaattct
acatccaaacccagaagcaactggaagagagcaacagtggacctggcttg
agcttttggaaacttcaaagcctacctcaagtgacaccttcttccagtaa
tgccacactccctcatcttactcagtagtgttattcccacaggagtaagc
atttaaatatatgagcctattagagacattcctacccaaaacaccacatt
ttactcactggcccccacagatgtgtgatcatttcaaaatgcaagaatgc
attcagtcacacttcctaaagtccgtatagttacatcagtttcaaactgt
ttaaaagcccaaagtttattttaagcctcatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49744276_49744835
seq2: B6Ng01-272M05.b_42_601 (reverse)

seq1  TTTTCCCCCATCTACAGCAGAAGGAAGCTCTGATGATGACTAAGCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCCATCTACAGCAGAAGGAAGCTCTGATGATGACTAAGCAAAAG  50

seq1  AGTGATCTATGAATACTCCAGATTTATCATTGAGTAATTTTGTTGTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTATGAATACTCCAGATTTATCATTGAGTAATTTTGTTGTTAGG  100

seq1  GGCTGCGAACAGAACAGGATTATTTAGTTTTCTATAAGATGTAAGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGAACAGAACAGGATTATTTAGTTTTCTATAAGATGTAAGGACTG  150

seq1  TTTAGTGTCCGGACCTTGTACAGCCTAGCAGTGTTTCATTTCTTAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCCGGACCTTGTACAGCCTAGCAGTGTTTCATTTCTTAATCAG  200

seq1  TTAACAAATGGGTTCCATTTGTTATACTTTTTAATAAAATATTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATGGGTTCCATTTGTTATACTTTTTAATAAAATATTTTTGTTT  250

seq1  AACAGGACTTTGAGATTTGATATTACAAAATTATTTAAGGTAGAATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACTTTGAGATTTGATATTACAAAATTATTTAAGGTAGAATAACT  300

seq1  AATTTTTGACATGAATTAAGATGATTATATTTTTATTTGTTGATGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGACATGAATTAAGATGATTATATTTTTATTTGTTGATGTTTTT  350

seq1  ATTTATATAATTATATAAAATATTGAGCTTCTAAAATACTGATTCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATAATTATATAAAATATTGAGCTTCTAAAATACTGATTCTCACA  400

seq1  TTTTAATATAATAAATTGAAGTTTTTAAAAAAATTGTTGCCAGGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATAATAAATTGAAGTTTTTAAAAAAATTGTTGCCAGGTTTATA  450

seq1  TTTTCAATTTTATTTTAACTTCAGTTCCCATGTTTAGGGTACTTTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTTTATTTTAACTTCAGTTCCCATGTTTAGGGTACTTTTAGTC  500

seq1  TATAAATTATTTGAAAAATGAAAGAACAGTTGCCAAAAATTATATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATTTGAAAAATGAAAGAACAGTTGCCAAAAATTATATATATT  550

seq1  GAATGAATTC  560
      ||||||||||
seq2  GAATGAATTC  560


seq1: chr1_49622986_49623961
seq2: B6Ng01-272M05.g_67_1042

seq1  GAATTCTATATGGACAAAGATGAGAGAACATGTGGAAGGGTTCACCGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATGGACAAAGATGAGAGAACATGTGGAAGGGTTCACCGAGA  50

seq1  GGTTAGAAATGGCTTAAATATGATTAATCAGGTGGAAAGAAGGTTACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAAATGGCTTAAATATGATTAATCAGGTGGAAAGAAGGTTACTAG  100

seq1  GCTGGTATACAAGACCTGCTTCCTGGTCTAGCCAGGAATATGGGAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTATACAAGACCTGCTTCCTGGTCTAGCCAGGAATATGGGAAGATA  150

seq1  CTATATCAGAGTCTATAAATTGGCATGGTACAGAATTTAGTGCCCGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGAGTCTATAAATTGGCATGGTACAGAATTTAGTGCCCGGATT  200

seq1  AGGCTGAGTAACTGGATGTGAAACCCAGGCTAGATGTGAATGTTTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTAACTGGATGTGAAACCCAGGCTAGATGTGAATGTTTGAGAA  250

seq1  GTGTGCATGGATACAGAGGGTCCAGGAAAATTTCCTGGGTACACATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGGATACAGAGGGTCCAGGAAAATTTCCTGGGTACACATCCAG  300

seq1  TAGAAGCAAGTGGGAGGTCTGACTGGAAGGACTGGTTGGGTATTATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAAGTGGGAGGTCTGACTGGAAGGACTGGTTGGGTATTATGCAG  350

seq1  CCAGATAGGAATAGTTCTGTAAGAATCCTAGAGGATGGATTCAGCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGGAATAGTTCTGTAAGAATCCTAGAGGATGGATTCAGCAAAGG  400

seq1  TAGGGATGAACAAACTAGACCATGCCAGTTGATGTGGGATCCGTGTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGAACAAACTAGACCATGCCAGTTGATGTGGGATCCGTGTAGAT  450

seq1  TTGTTAGTGTGAGGTGAAGGTTTCTGTGGCAGTCAGTGTTCTATTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTGTGAGGTGAAGGTTTCTGTGGCAGTCAGTGTTCTATTGCAAT  500

seq1  GAATGAACTCCATGCCCAAGGCAATTCCTCTAAGAGAAATAATTTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACTCCATGCCCAAGGCAATTCCTCTAAGAGAAATAATTTAATGT  550

seq1  GGTTTTATTTATATCTTCAGAGAATTAATCCATTATCATTATGGTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTATATCTTCAGAGAATTAATCCATTATCATTATGGTAGAAA  600

seq1  GCATTGCAGCACACATTCAGATATATTGTTCAGAGGTAGCTGAGAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAGCACACATTCAGATATATTGTTCAGAGGTAGCTGAGAATTCT  650

seq1  ACATCCAAACCCAGAAGCAACTGGAAGAGAGCAACAGTGGACCTGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAACCCAGAAGCAACTGGAAGAGAGCAACAGTGGACCTGGCTTG  700

seq1  AGCTTTTGGAAACTTCAAAGCCTACCTCAAGTGACACCTTCTTCCAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGAAACTTCAAAGCCTACCTCAAGTGACACCTTCTTCCAGTAA  750

seq1  TGCCACACTCCCTCATCTTACTCAGTAGTGTTATTCCCACAGGAGTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACTCCCTCATCTTACTCAGTAGTGTTATTCCCACAGGAGTAAGC  800

seq1  ATTTAAATATATGAGCCTATTAGAGACATTCCTACCCAAAACACCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATATGAGCCTATTAGAGACATTCCTACCCAAAACACCACATT  850

seq1  TTACTCACTGGCCCCCACAGATGTGTGATCATTTCAAAATGCAAGAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACTGGCCCCCACAGATGTGTGATCATTTCAAAATGCAAGAATGC  900

seq1  ATTCAGTCACACTTCCT-AAGTCCGTATAGTTTACATCAGTTTCAAACTG  949
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ATTCAGTCACACTTCCTAAAGTCCGTATAG-TTACATCAGTTTCAAACTG  949

seq1  TTTAAAAGCCCAAAGTTTATTTTAAGC  976
      |||||||||||||||||||||||||||
seq2  TTTAAAAGCCCAAAGTTTATTTTAAGC  976


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