BAC Information

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BAC

Clone NameB6Ng01-273A03
Chromosome1 (Build37)9 (Build37)
Map Location 189,801,171 - 189,802,03443,181,761 - 43,182,030
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A03.bB6Ng01-273A03.g
ACCGA074689GA074690
length865192
definitionB6Ng01-273A03.b B6Ng01-273A03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(189,801,171 - 189,802,034)(43,181,761 - 43,182,030)
sequence
gaattcaccttctctataagctagcccatttcctcactaacatgtccgta
gactcaggcctccagagagggagtggttcctccaggctcaccattagctc
acagtggggccaccattctttatctctttattttattggatattttatta
atttacatttagaatgttatcccctttcccggtttcccctccggaacccc
ccattctgtcccccctctccctgcttctatgagggtgttccccacccccg
ctccccatcctggccttcccctacactggggcattgagcttctgcatcac
tttgtatgtgcatgaggtgtgcatgtgcaaatgcgattgtgctgtggctg
cagacagaagtggctgccagaggagaagtcaagggttctcttctcccggt
gtctccagtattcccgtcaggcaggctttctcattgaacatggagatgac
tgttgtttttgtggtgttgctgatgttcctgcttctgataacctgccctt
ggataataagagtgtgtagctatgcttggcttttaggtggatgccagtga
tccgaactcatgtcctcatgcttgagcagcaaagtacacttacccactga
accatctccccaggccaagaggcaggattctatagaggctatccatgagc
atttgggtcctgagcatatacaggtgttctggtagagtcacgctacctgt
ttggaaggaagcaccatcactatgccccgtccaatcagttcccttgtatt
ctctctcagggatactgcagcaaccagatggaagctgtgtttctggaggc
aaaggagggcttggtcaggtgtatgtgtgtgttgtatatgtatgcattgt
gttatgtgtgttgtg

cttcctggcttacaggttggaatattattttattcatgactacagcagga
gtcagatgttattaccttgatttacaaggggatatagacacaatgtggta
ggaaggaataaagaaaggaagaaggaaggaaggaaagagaaggaaggaag
gaaataggaaagaaggaagaaggaaggaaggaaaagagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189801171_189802034
seq2: B6Ng01-273A03.b_47_911

seq1  GAATTCACCTTCTCTATAAGCTAGCCCATTTCCTCACTAACATGTCCGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCTCTATAAGCTAGCCCATTTCCTCACTAACATGTCCGTA  50

seq1  GACTCAGGCCTCCAGAGAGGGAGTGGTTCCTCCAGGCTCACCATTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGCCTCCAGAGAGGGAGTGGTTCCTCCAGGCTCACCATTAGCTC  100

seq1  ACAGTGGGGCCACCATTCTTTATCTCTTTATTTTATTGGATATTTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGGCCACCATTCTTTATCTCTTTATTTTATTGGATATTTTATTA  150

seq1  ATTTACATTTAGAATGTTATCCCCTTTCCCGGTTTCCCCTCCGGAACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTAGAATGTTATCCCCTTTCCCGGTTTCCCCTCCGGAACCCC  200

seq1  CCATTCTGTCCCCCCTCTCCCTGCTTCTATGAGGGTGTTCCCCACCCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTCCCCCCTCTCCCTGCTTCTATGAGGGTGTTCCCCACCCCCG  250

seq1  CTCCCCATCCTGGCCTTCCCCTACACTGGGGCATTGAGCTTCTGCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCCTGGCCTTCCCCTACACTGGGGCATTGAGCTTCTGCATCAC  300

seq1  TTTGTATGTGCATGAGGTGTGCATGTGCAAATGCGATTGTGCTGTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTGCATGAGGTGTGCATGTGCAAATGCGATTGTGCTGTGGCTG  350

seq1  CAGACAGAAGTGGCTGCCAGAGGAGAAGTCAAGGGTTCTCTTCTCCCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAGTGGCTGCCAGAGGAGAAGTCAAGGGTTCTCTTCTCCCGGT  400

seq1  GTCTCCAGTATTCCCGTCAGGCAGGCTTTCTCATTGAACATGGAGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGTATTCCCGTCAGGCAGGCTTTCTCATTGAACATGGAGATGAC  450

seq1  TGTTGTTTTTGTGGTGTTGCTGATGTTCCTGCTTCTGATAACCTGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTGTGGTGTTGCTGATGTTCCTGCTTCTGATAACCTGCCCTT  500

seq1  GGATAATAAGAGTGTGTAGCTATGCTTGGCTTTTAGGTGGATGCCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATAAGAGTGTGTAGCTATGCTTGGCTTTTAGGTGGATGCCAGTGA  550

seq1  TCCGAACTCATGTCCTCATGCTTGAGCAGCAAAGTACACTTACCCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAACTCATGTCCTCATGCTTGAGCAGCAAAGTACACTTACCCACTGA  600

seq1  ACCATCTCCCCAGGCCAAGAGGCAGGATTCTATAGAGGCTATCCATGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCCCCAGGCCAAGAGGCAGGATTCTATAGAGGCTATCCATGAGC  650

seq1  ATTTGGGTCCTGAGCATATACAGGTGTTCTGGTAGAGTCACGCTACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTCCTGAGCATATACAGGTGTTCTGGTAGAGTCACGCTACCTGT  700

seq1  TTGGAAGGAAGCACCATCACTATGCCCCGTCCAATCAGTTCCCTTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGAAGCACCATCACTATGCCCCGTCCAATCAGTTCCCTTGTATT  750

seq1  CTCTCTCAGGGATACTGCAGCAACCAGATGGAAGCTGTGTTTCTGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAGGGATACTGCAGCAACCAGATGGAAGCTGTGTTTCTGGAGGC  800

seq1  AAAGGAGGGCTTGGTCAGGTGTATGTGTGTGTTGTATATGTATGCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGGCTTGGTCAGGTGTATGTGTGTGTTGTATATGTATGCATTGT  850

seq1  G-TATGTGTGTTGTG  864
      | |||||||||||||
seq2  GTTATGTGTGTTGTG  865


seq1: chr9_43181761_43182030
seq2: B6Ng01-273A03.g_182_262 (reverse)

seq1  TTCCCTCTTTTCCTTCCTTCTTTCTTCCTCCCTCCCCCTCTCCCTTCCTT  50
      |||||||||||||||||||| |||||||| | | ||  |     ||||||
seq2  TTCCCTCTTTTCCTTCCTTCCTTCTTCCTTCTTTCCTAT-----TTCCTT  45

seq1  CTTTTCTTCTTCCTCCCTCCCTCCTTCCTTCTTCCTTT-TTCTCCCTTCC  99
      |    |||| | |||  ||| ||||||||||||||||| |          
seq2  C----CTTCCTTCTCTTTCCTTCCTTCCTTCTTCCTTTCT----------  81

seq1  TCCCTCCCTCCCTCCTTCCTTCTTTCTCCCCTTTTCTTCCTTCCTTGCTC  149
                                                        
seq2  --------------------------------------------------  81

seq1  CTCCCTCCTTCCTCCCACCCTCCCTCCTTTCTCTCTCCCTCCTTCCCTCC  199
                                                        
seq2  --------------------------------------------------  81

seq1  CTCCCCTTCTCCGTCTGTCCTTCTTTTCCTCATTTCTCCTTCTTTCCTTC  249
                                                        
seq2  --------------------------------------------------  81

seq1  CTTCCTCCCTTCCATTTTTCT  270
                           
seq2  ---------------------  81


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