BAC Information

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BAC

Clone NameB6Ng01-273G21
Chromosome1 (Build37)
Map Location 97,347,143 - 97,434,056
singlet/doubletdoublet
Overlap geneLOC100041686
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneRnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273G21.bB6Ng01-273G21.g
ACCGA075005GA075006
length1,056775
definitionB6Ng01-273G21.b B6Ng01-273G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,347,143 - 97,348,229)(97,433,287 - 97,434,056)
sequence
gaattcagattcgccaacttaaaatagatataatagcctgcattttgaat
cattattaaggataatatgtgtttgtgtagctcaactgtgggaggagtga
atatactttgtactttagactcatcatagatgatgagcatttcttctgca
gtatttatcagagtttttcaaagttgggcttatctcttcatgcatatatg
cttccgcatacacctgattctttgtatgcctataggcttttttgtaagct
atagtctccaagtatatggtatctatgcagatttaattagttgtgtggcc
agtggtttttggtgttgttgctgttgttttgaaacttaaacacaattcta
gcttgtggacatccgagaagggcactgaaaagattttctcctctctgctt
cagaaaggccagaagcaggaagtaaacagaattagttcagtttcagctac
acagatgcaatttcctcttcttggggataataactattcaaagctgatgg
cttttaaagagcaaactgttacccaatttccttcctctttcatcagtttt
taaaatgtttatctgtggaaaacactgtaaaggcttacactcaaatgatc
atgttccttgtggccatttactagtacacatcctgcccacaactgagaaa
gcaacatcagagtgttactgcatgcaaaactgtgcgaggaaatgctcctg
tgccttctcacgcgtagtgctgaccactgtccctcagtggttttcttgtc
actccagtgttaaggtgaactttatagacaagggaaggtgattaatttac
aaattatatcgtatataggagtaaaatcaaattctaatatcctacaccaa
gctttcctgaaatgttttctatggaaatgctgagacgatttatgaacgca
aactacctgcccacctgaaaatgatggcaaaccaaagaccattggtacat
agatgaaatatttgtctcttgcttaacatattattttcgatggcaagtca
ctgaagaacatataaacatcagtctggtacctattcatgcaagttcagtc
atgatc
gaattctcagaaactcagtctccatatggacattagaacaactggaatga
agcatggcatctattcctcaacaaggcttccttttcctacctgagtggga
gaggatgctcctaacctagcagagacttgatgtgcctgggtgtggggaag
cctagaggggacaccctctcagaagagaagggtagggggatggaggagtg
tctcagtgtggaggcattgggaatggggcagagcttgggatgtaaataaa
taaataaataaataaataaatatttacaaagaaaggaacacagtctcatt
gtctcattgggtatttgggtaatccctaaagggtagaacttttcttagtg
attttaaatctggtgtattattctgatctcttgagcaactagatagatag
gtaggtaggaagacagacagatgagagattgatagatcgatgttataagt
ttaccactgatgtctaaatcctttgtaataaattacagcctaatatttga
ctcccacgctgcttctaatgatccatcactcaagaatgactgatggactt
catgatggctttgatctatggccatcttctgcatagcatttcatacaggt
actatagatgagtgtgtgtgggttacattgaaatttcctaactcttctca
gtggccctccccccaacccctttagaatctactgatgttgttatcccttg
attctagcccatccccctaccagtcagtgatacgtgtttgatttctcaaa
tttgtttctttttacttctttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97347143_97348229
seq2: B6Ng01-273G21.b_47_1102

seq1  GAATTCAGATTCGCCAACTTAAAATAGATATAATAGCCTGCATTTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCGCCAACTTAAAATAGATATAATAGCCTGCATTTTGAAT  50

seq1  CATTATTAAGGATAATATGTGTTTGTGTAGCTCAACTGTGGGAGGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAAGGATAATATGTGTTTGTGTAGCTCAACTGTGGGAGGAGTGA  100

seq1  ATATACTTTGTACTTTAGACTCATCATAGATGATGAGCATTTCTTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTGTACTTTAGACTCATCATAGATGATGAGCATTTCTTCTGCA  150

seq1  GTATTTATCAGAGTTTTTCAAAGTTGGGCTTATCTCTTCATGCATATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATCAGAGTTTTTCAAAGTTGGGCTTATCTCTTCATGCATATATG  200

seq1  CTTCCGCATACACCTGATTCTTTGTATGCCTATAGGCTTTTTTGTAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCATACACCTGATTCTTTGTATGCCTATAGGCTTTTTTGTAAGCT  250

seq1  ATAGTCTCCAAGTATATGGTATCTATGCAGATTTAATTAGTTGTGTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCAAGTATATGGTATCTATGCAGATTTAATTAGTTGTGTGGCC  300

seq1  AGTGGTTTTTGGTGTTGTTGCTGTTGTTTTGAAACTTAAACACAATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTTGGTGTTGTTGCTGTTGTTTTGAAACTTAAACACAATTCTA  350

seq1  GCTTGTGGACATCCGAGAAGGGCACTGAAAAGATTTTCTCCTCTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGACATCCGAGAAGGGCACTGAAAAGATTTTCTCCTCTCTGCTT  400

seq1  CAGAAAGGCCAGAAGCAGGAAGTAAACAGAATTAGTTCAGTTTCAGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCCAGAAGCAGGAAGTAAACAGAATTAGTTCAGTTTCAGCTAC  450

seq1  ACAGATGCAATTTCCTCTTCTTGGGGATAATAACTATTCAAAGCTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCAATTTCCTCTTCTTGGGGATAATAACTATTCAAAGCTGATGG  500

seq1  CTTTTAAAGAGCAAACTGTTACCCAATTTCCTTCCTCTTTCATCAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGAGCAAACTGTTACCCAATTTCCTTCCTCTTTCATCAGTTTT  550

seq1  TAAAATGTTTATCTGTGGAAAACACTGTAAAGGCTTACACTCAAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTATCTGTGGAAAACACTGTAAAGGCTTACACTCAAATGATC  600

seq1  ATGTTCCTTGTGGCCATTTACTAGTACACATCCTGCCCACAACTGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTGTGGCCATTTACTAGTACACATCCTGCCCACAACTGAGAAA  650

seq1  GCAACATCAGAGTGTTACTGCATGCAAAACTGTGCGAGGAAATGCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCAGAGTGTTACTGCATGCAAAACTGTGCGAGGAAATGCTCCTG  700

seq1  TGCCTTCTCACGCGTAGTGCTGACCACTGTCCCTCAGGTGGTTTTCTTGT  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCCTTCTCACGCGTAGTGCTGACCACTGTCCCTCA-GTGGTTTTCTTGT  749

seq1  CACTCCAGTGTTAAGGTGAACTTTATAGACAAAGGGAAGGTGATTAATTT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTCCAGTGTTAAGGTGAACTTTATAGAC-AAGGGAAGGTGATTAATTT  798

seq1  ACAAATTATATCGTATTATTAGGAGTTAAAAATCAAATTCTAATATTCCT  850
      ||||||||||||||||   |||||||  ||||||||||||||||| ||||
seq2  ACAAATTATATCGTAT--ATAGGAGT--AAAATCAAATTCTAATA-TCCT  843

seq1  ACA-CAAGCTTTCCTGAAATGTTTTCTATGGAAAATGCTGAGACGATTTA  899
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACACCAAGCTTTCCTGAAATGTTTTCTATGG-AAATGCTGAGACGATTTA  892

seq1  TGAACGCAAACTTACCTGCCCCACCTGAAATATGATGGCAAACCATAGGA  949
      ||||||||||| |||||| ||||||||||| |||||||||||||| ||  
seq2  TGAACGCAAAC-TACCTG-CCCACCTGAAA-ATGATGGCAAACCAAAG--  937

seq1  ACCATTGTGTACATAGATGAAATATTTGTCCTCTTGCTATAACATATTAT  999
      ||||||| ||||||||||||||||||||| |||||||| |||||||||||
seq2  ACCATTG-GTACATAGATGAAATATTTGT-CTCTTGCT-TAACATATTAT  984

seq1  TTCTAGATGCAAATTTCACTGAAGTAACATTATAACAATTCAGTCTTTGG  1049
      || | ||||  ||  ||||||||| |||||   ||||  |||||||   |
seq2  TT-TCGATGGCAA-GTCACTGAAG-AACATATAAACA--TCAGTCT---G  1026

seq1  GTACCTAATTCATGGTCATAGTTCACTGTTACATGATC  1087
      |||||| |||||||  || |||||| |    |||||||
seq2  GTACCT-ATTCATG--CA-AGTTCAGT----CATGATC  1056

seq1: chr1_97433287_97434056
seq2: B6Ng01-273G21.g_64_838 (reverse)

seq1  TGGCAAAGAAGTAAAA--GAACAAATTTGAGAAATC-AACACGTATCACT  47
      ||||||||||||||||   ||||||||||||||||| |||||||||||||
seq2  TGGCAAAGAAGTAAAAAGAAACAAATTTGAGAAATCAAACACGTATCACT  50

seq1  GACTGGTA-GGGGATGGGCTAGAATCAAGGGATAACAACATCAGTAGATT  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTAGGGGGATGGGCTAGAATCAAGGGATAACAACATCAGTAGATT  100

seq1  CTAAAGGGGTTGGGGGGAGGGCCACTGAGAAGAGTTAGGAAA-TTCAATG  145
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAAAGGGGTTGGGGGGAGGGCCACTGAGAAGAGTTAGGAAATTTCAATG  150

seq1  TAACCCACACACACTCATCTATAGTACCTGTATGAAATGCTATGCAGAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACACACACTCATCTATAGTACCTGTATGAAATGCTATGCAGAAG  200

seq1  ATGGCCATAGATCAAAGCCATCATGAAGTCCATCAGTCATTCTTGAGTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCATAGATCAAAGCCATCATGAAGTCCATCAGTCATTCTTGAGTGA  250

seq1  TGGATCATTAGAAGCAGCGTGGGAGTCAAATATTAGGCTGTAATTTATTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATTAGAAGCAGCGTGGGAGTCAAATATTAGGCTGTAATTTATTA  300

seq1  CAAAGGATTTAGACATCAGTGGTAAACTTATAACATCGATCTATCAATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTTAGACATCAGTGGTAAACTTATAACATCGATCTATCAATCT  350

seq1  CTCATCTGTCTGTCTTCCTACCTACCTATCTATCTAGTTGCTCAAGAGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTCTGTCTTCCTACCTACCTATCTATCTAGTTGCTCAAGAGAT  400

seq1  CAGAATAATACACCAGATTTAAAATCACTAAGAAAAGTTCTACCCTTTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATACACCAGATTTAAAATCACTAAGAAAAGTTCTACCCTTTAG  450

seq1  GGATTACCCAAATACCCAATGAGACAATGAGACTGTGTTCCTTTCTTTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACCCAAATACCCAATGAGACAATGAGACTGTGTTCCTTTCTTTGT  500

seq1  AAATATTTATTTATTTATTTATTTATTTATTTACATCCCAAGCTCTGCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATTTATTTATTTATTTATTTATTTACATCCCAAGCTCTGCCC  550

seq1  CATTCCCAATGCCTCCACACTGAGACACTCCTCCATCCCCCTACCCTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAATGCCTCCACACTGAGACACTCCTCCATCCCCCTACCCTTCT  600

seq1  CTTCTGAGAGGGTGTCCCCTCTAGGCTTCCCCACACCCAGGCACATCAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGGGTGTCCCCTCTAGGCTTCCCCACACCCAGGCACATCAAG  650

seq1  TCTCTGCTAGGTTAGGAGCATCCTCTCCCACTCAGGTAGGAAAAGGAAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTAGGTTAGGAGCATCCTCTCCCACTCAGGTAGGAAAAGGAAGC  700

seq1  CTTGTTGAGGAATAGATGCCATGCTTCATTCCAGTTGTTCTAATGTCCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGAGGAATAGATGCCATGCTTCATTCCAGTTGTTCTAATGTCCAT  750

seq1  ATGGAGACTGAGTTTCTGAGAATTC  770
      |||||||||||||||||||||||||
seq2  ATGGAGACTGAGTTTCTGAGAATTC  775