BAC Information

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BAC

Clone NameB6Ng01-277A17
Chromosome1 (Build37)
Map Location 48,922,224 - 48,923,344
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277A17.bB6Ng01-277A17.g
ACCGA077668GA077669
length1,1111,170
definitionB6Ng01-277A17.b B6Ng01-277A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagatttctgaggaagatattttgattcatgtcagtgccaggt
attttatatctccaaatacatagcttttgtaattctggttattttttctc
atgttacttcaatagttaaatacatttatatttgttaagtggtgactata
ttgtttccttaattatccattcatattccatataacatgtatcatttaat
attaatttactgagttatctgaaacatattatataaccaaggcatgaata
gagtcttatttgaaaatgccttaaaagaaaaatgattactgcattattca
cttgataagatgtacacaaatgtttttaaaaataaattcaatcatagaag
taatatctgccctgtatatcacctttgtctatatgtttggaatattgttt
caggaaatattcctttcctttacataaagatgatttcaaatttaattcat
ttcacattcacatgtctgctgtttataaaaatgaactagaaaattttggc
tagtgtgtgtttacaaagcagttaatagttattaatatttcctattcaaa
accaccagtaatttctgtattcttaccaagatacaaaattacaatacata
aaatctcagaaaatttcctcaaaatatagaaacataaatcaaaattaaga
ggaattatgagaggtatcagtattgtgctcttcttctgctgtcctttata
cacctacatgcaatgacagggtctcaggatagtacagtcctatttatgtg
catgtctgaaataagtgatgtattacctgaggattcttccatccagtgta
catatccagtctgtattcagtcactatgcccacaacttcaagttactgat
caattgctgctgtctaagcagcttttttgctacacagactcagtgattga
tggactcagaaggaatcctcacattcacactgaccattagacactgagat
atgtctgtggcttccatttcccagacatggtgcctgaagtgtaaatatat
atttttgtcttgtacttttattgaaaaagtctttatttcatctcttttct
catactgttggatgtcagtcgttgtcataatctttatgcctttcagttac
aggtatataaa
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaagtgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggaaactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttctttgtttccacttggttgatttcacccctgagtttgatta
tttccctgctgtctactcctcttgggtgatttgcttccttttttttctag
agcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttct
ttatggaggcactcagagctatgagtttcccttcttagaaatgctttcat
gtgtcccaagtttgggttacgttggtgccttcatttcatgaactctaaaa
ggtctttattcctccttaatcttccttgaccaagtatcatgagaagaggt
ttgtccagttcacgtgagcttgacttccgtcattgttttgtatatgcaga
tactgacgcccctatgacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48922224_48923344
seq2: B6Ng01-277A17.b_47_1157 (reverse)

seq1  TTTATATAACCTGTAAAATTTGAAAAGGCAT-AAGATTAATGACAACGAC  49
      ||||||| ||||||||    || |||||||| |||||| |||||||||||
seq2  TTTATAT-ACCTGTAA---CTG-AAAGGCATAAAGATT-ATGACAACGAC  44

seq1  TTGACCAATCAACAGTATTGAGAAAGAGA-ATGAAATAAAGGACTTTTTT  98
       ||| ||  |||||||| ||||||| ||| |||||||||| ||| |||||
seq2  -TGA-CATCCAACAGTA-TGAGAAA-AGAGATGAAATAAA-GAC-TTTTT  88

seq1  CAATAAAAGGTAC-AGAC-AAAATATATATTTACACCTTCAGGCACCATG  146
      |||||||| |||| |||| |||||||||||||||| ||||||||||||||
seq2  CAATAAAA-GTACAAGACAAAAATATATATTTACA-CTTCAGGCACCATG  136

seq1  TCTGGGAAATGGAAGCCACAGACATATCTCAGTGTCTAATGGTCAGTGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAATGGAAGCCACAGACATATCTCAGTGTCTAATGGTCAGTGTG  186

seq1  AATGTGAGGATTCCTTCTGAGTCCATCAATCACTGAGTCTGTGTAGCAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGATTCCTTCTGAGTCCATCAATCACTGAGTCTGTGTAGCAAA  236

seq1  AAAGCTGCTTAGACAGCAGCAATTGATCAGTAACTTGAAGTTGTGGGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCTTAGACAGCAGCAATTGATCAGTAACTTGAAGTTGTGGGCAT  286

seq1  AGTGACTGAATACAGACTGGATATGTACACTGGATGGAAGAATCCTCAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGAATACAGACTGGATATGTACACTGGATGGAAGAATCCTCAGG  336

seq1  TAATACATCACTTATTTCAGACATGCACATAAATAGGACTGTACTATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATCACTTATTTCAGACATGCACATAAATAGGACTGTACTATCCT  386

seq1  GAGACCCTGTCATTGCATGTAGGTGTATAAAGGACAGCAGAAGAAGAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTGTCATTGCATGTAGGTGTATAAAGGACAGCAGAAGAAGAGCA  436

seq1  CAATACTGATACCTCTCATAATTCCTCTTAATTTTGATTTATGTTTCTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTGATACCTCTCATAATTCCTCTTAATTTTGATTTATGTTTCTAT  486

seq1  ATTTTGAGGAAATTTTCTGAGATTTTATGTATTGTAATTTTGTATCTTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGAAATTTTCTGAGATTTTATGTATTGTAATTTTGTATCTTGG  536

seq1  TAAGAATACAGAAATTACTGGTGGTTTTGAATAGGAAATATTAATAACTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACAGAAATTACTGGTGGTTTTGAATAGGAAATATTAATAACTA  586

seq1  TTAACTGCTTTGTAAACACACACTAGCCAAAATTTTCTAGTTCATTTTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTTTGTAAACACACACTAGCCAAAATTTTCTAGTTCATTTTTA  636

seq1  TAAACAGCAGACATGTGAATGTGAAATGAATTAAATTTGAAATCATCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCAGACATGTGAATGTGAAATGAATTAAATTTGAAATCATCTTT  686

seq1  ATGTAAAGGAAAGGAATATTTCCTGAAACAATATTCCAAACATATAGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGGAAAGGAATATTTCCTGAAACAATATTCCAAACATATAGACA  736

seq1  AAGGTGATATACAGGGCAGATATTACTTCTATGATTGAATTTATTTTTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATATACAGGGCAGATATTACTTCTATGATTGAATTTATTTTTAA  786

seq1  AAACATTTGTGTACATCTTATCAAGTGAATAATGCAGTAATCATTTTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGTGTACATCTTATCAAGTGAATAATGCAGTAATCATTTTTCT  836

seq1  TTTAAGGCATTTTCAAATAAGACTCTATTCATGCCTTGGTTATATAATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCATTTTCAAATAAGACTCTATTCATGCCTTGGTTATATAATAT  886

seq1  GTTTCAGATAACTCAGTAAATTAATATTAAATGATACATGTTATATGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGATAACTCAGTAAATTAATATTAAATGATACATGTTATATGGAA  936

seq1  TATGAATGGATAATTAAGGAAACAATATAGTCACCACTTAACAAATATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGGATAATTAAGGAAACAATATAGTCACCACTTAACAAATATAA  986

seq1  ATGTATTTAACTATTGAAGTAACATGAGAAAAAATAACCAGAATTACAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTAACTATTGAAGTAACATGAGAAAAAATAACCAGAATTACAAA  1036

seq1  AGCTATGTATTTGGAGATATAAAATACCTGGCACTGACATGAATCAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTATTTGGAGATATAAAATACCTGGCACTGACATGAATCAAAAT  1086

seq1  ATCTTCCTCAGAAATCTTAGAATTC  1121
      |||||||||||||||||||||||||
seq2  ATCTTCCTCAGAAATCTTAGAATTC  1111