BAC Information

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BAC

Clone NameB6Ng01-278G17
Chromosome1 (Build37)
Map Location 90,640,615 - 90,641,606
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127
Downstream gene2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G17.g
ACCGA078668
length999
definitionB6Ng01-278G17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacggattcattaactgtcttctaaccccaaagatatgggaagaa
tctctttgcaaagattacaggatttaacattaatgggattcaaatctgtg
gttaaactgaaatgagaatcttgcttcgggagtggatcgggcaagggtgc
ttctatttgaagcttctaaaaatgtgatggtagcccagtcagtgccaaga
actgtcaatttaggttaaatgctccctgtcactgtgtgggtgatgtgcga
ggagatacaatattaagttgatgtatttaaaatgtttctcttctacatgg
agtgggggtggggaatgcattcctttgagccaccatgagactattcccac
atctgccagtacaaacaactggggataaacaaacgaaccaacaaacaccc
cccccccccccgcaaaattgggaaagggctggagagatgacccagtggat
tagagtgcttactgttgtgttttgttttaatctcacgtacctaacctggc
cattgctcctgtttcctgaacctctctttctccctttcactgattggcta
gtccagaaagtgacgtggagctcccaccaatgggatgagatatcccacct
ttgtcagggataaaagactgaagccatcttggccaaggactctcgctagc
ctggtttgggtcatagtgtgctccccctacctgcttttttaaacaaacaa
gaaacgagttcacggatttgttcctgtgttcctgtgtccctgtgctccct
tgtgtgacaccgagattgttttttgtttgtttctattgctatgtgagcat
gtttgagctcaggatcgacacaaaaagctgggacgcggtgttggcaagaa
ctctgtaccccgaattctttacggagattgggaggcagacagggagagtt
tgtaggaagcccctgaaccaacctagctggagtaccacagtgggtgtgca
gtggcacaaacaggagaggccctgcctcgaacacagggtgaaggaggga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90640615_90641606
seq2: B6Ng01-278G17.g_68_1066 (reverse)

seq1  TCCCTCCTTCCACCTTGTGTCTGAGGCAGGGCCTCTCCTGTTTGTGCCAC  50
      ||||||||| |||| |||||  ||||||||||||||||||||||||||||
seq2  TCCCTCCTT-CACCCTGTGTTCGAGGCAGGGCCTCTCCTGTTTGTGCCAC  49

seq1  TGCACA-CCACTGT-GTACTCCAGCTA-GTTGGTTCAGGGGCTTCCTACA  97
      |||||| ||||||| |||||||||||| ||||||||||||||||||||||
seq2  TGCACACCCACTGTGGTACTCCAGCTAGGTTGGTTCAGGGGCTTCCTACA  99

seq1  AACTCT-CCTGTCTGCCTCCC-ATCTCCGT-AAGAATTCGGGGTTACAGA  144
      |||||| |||||||||||||| |||||||| |||||||||||| ||||||
seq2  AACTCTCCCTGTCTGCCTCCCAATCTCCGTAAAGAATTCGGGG-TACAGA  148

seq1  G-TCTTGCCAACACCGCGT-CCAGCTTTTTGTGTCGATCCTGAGCTCAAA  192
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCTTGCCAACACCGCGTCCCAGCTTTTTGTGTCGATCCTGAGCTCAAA  198

seq1  CATGCTCACATAGCATTAGAAACAAACAAAAAACAATCTCGGTGTCACAC  242
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATGCTCACATAGCAATAGAAACAAACAAAAAACAATCTCGGTGTCACAC  248

seq1  AAGGGAGCACAGGGACACAGGAACACAGGAACAAATCCGTGAACTCGTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCACAGGGACACAGGAACACAGGAACAAATCCGTGAACTCGTTT  298

seq1  CTTGTTTGTTTAAAAAAGCAGGTAGGGGGAGCACACTATGACCCAAACCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGTTTAAAAAAGCAGGTAGGGGGAGCACACTATGACCCAAACCA  348

seq1  GGCTAGCGAGAGTCCTTGGCCAAGATGGCTTCAGTCTTTTATCCCTGACA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCGAGAGTCCTTGGCCAAGATGGCTTCAGTCTTTTATCCCTGACA  398

seq1  AAGGTGGGATATCTCATCCCATTGGTGGGAGCTCCACGTCACTTTCTGGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGATATCTCATCCCATTGGTGGGAGCTCCACGTCACTTTCTGGA  448

seq1  CTAGCCAATCAGTGAAAGGGAGAAAGAGAGGTTCAGGAAACAGGAGCAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAATCAGTGAAAGGGAGAAAGAGAGGTTCAGGAAACAGGAGCAAT  498

seq1  GGCCAGGTTAGGTACGTGAGATTAAAACAAAACACAACAGTAAGCACTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTAGGTACGTGAGATTAAAACAAAACACAACAGTAAGCACTCT  548

seq1  AATCCACTGGGTCATCTCTCCAGCCCTTTCCCAATTTTGC-GGGGGGGGG  591
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATCCACTGGGTCATCTCTCCAGCCCTTTCCCAATTTTGCGGGGGGGGGG  598

seq1  GGGGTGTTTGTTGGTTCGTTTGTTTATCCCCAGTTGTTTGTACTGGCAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTTGTTGGTTCGTTTGTTTATCCCCAGTTGTTTGTACTGGCAGA  648

seq1  TGTGGGAATAGTCTCATGGTGGCTCAAAGGAATGCATTCCCCACCCCCAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATAGTCTCATGGTGGCTCAAAGGAATGCATTCCCCACCCCCAC  698

seq1  TCCATGTAGAAGAGAAACATTTTAAATACATCAACTTAATATTGTATCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAGAAGAGAAACATTTTAAATACATCAACTTAATATTGTATCTC  748

seq1  CTCGCACATCACCCACACAGTGACAGGGAGCATTTAACCTAAATTGACAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACATCACCCACACAGTGACAGGGAGCATTTAACCTAAATTGACAG  798

seq1  TTCTTGGCACTGACTGGGCTACCATCACATTTTTAGAAGCTTCAAATAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCACTGACTGGGCTACCATCACATTTTTAGAAGCTTCAAATAGA  848

seq1  AGCACCCTTGCCCGATCCACTCCCGAAGCAAGATTCTCATTTCAGTTTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTTGCCCGATCCACTCCCGAAGCAAGATTCTCATTTCAGTTTAA  898

seq1  CCACAGATTTGAATCCCATTAATGTTAAATCCTGTAATCTTTGCAAAGAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATTTGAATCCCATTAATGTTAAATCCTGTAATCTTTGCAAAGAG  948

seq1  ATTCTTCCCATATCTTTGGGGTTAGAAGACAGTTAATGAATCCGTGAATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCATATCTTTGGGGTTAGAAGACAGTTAATGAATCCGTGAATT  998

seq1  C  992
      |
seq2  C  999