BAC Information

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BAC

Clone NameB6Ng01-278M05
Chromosome1 (Build37)
Map Location 94,849,741 - 94,996,326
singlet/doubletdoublet
Overlap geneGpr35, Aqp12, Kif1a
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10
Downstream geneAgxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M05.bB6Ng01-278M05.g
ACCGA078921GA078922
length9671,024
definitionB6Ng01-278M05.b B6Ng01-278M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,849,741 - 94,850,609)(94,995,278 - 94,996,326)
sequence
gaattctctggcaggtaatgataaactagccttatactcccggggtactg
tttgatggcgtgccatcagcttgcgcattgttgagtttaattgctggggt
ttggggatgatttttcatggctgtgctcctgtgtgactctggtcttaaca
cctttgtgtgcagttccactgagaggacagggcctgccttagaggatgcc
ctgtggtctgtttctctgagacattctgaaagtagtttcagtagtagtag
gttcagctcactttatccttgaatgcagatgcacctcacgaggaacgcta
tcagtgtggagtgcttcctttatagaagtgttttgaattatgaactcaag
aactttaatggatgggagcaattctaatttgtgtttttgatactaacttt
ggcaaggggtgacttttaataaattcatccatttatcaaagtcgtcaaat
gtatttggttaaagctattaatatccttttaatcctaacggtggaagtct
ctcaaggcttttctttcatttcttgtattagtgatttgtacctgttttgc
tttgagcaatctagccagaagattgccagttttacttacctttatgaata
actgtgccccccatgcacccccaccctgcccaagatctcactaagtcgtc
taggctaccactgaaagtgccagaggccagagtagccttgaactcatgac
tttcctccttaaggcccagcaaactgagtttgcaggccttcacccactag
gcccaggttacaacagctttcaacacctaccttcttggtgttgaagggat
gctccattggtgaagagcacttggcttgttcattcaagagacctgggttc
cattcctagcgttcacaatggcaggctcacaactgttctgtactcccagc
taagaaataaaccatttcttggtaccttgtttgacacataagtacaattt
cttcatttttcttcttt
gaattcagtcccaggccagtaagaggggattaggtggtctaaggatccag
tctgttctgtctcttcagttgattgtgtgttctgcaaatgtagcagggcc
agtcctcctgtgggcttttgtgcagggtttgggggaaggggcagcaaaaa
caaggtagcagatgaggctgactagccctaagaaaagtccaggaggacaa
ggagggttcaaggaagatcatccagcacaaagactgcctttgggcagagt
ccatcgctctaagaactgggaggggcccagtggtcacctgtggacaggga
tgggcctgggccactgagctggcagatgtgatttgcagcatatagaggcc
tgtatgttccctagagcatgggcaaaaccagggttcttagatctaaggac
agagcttcccactgtccacactggacagtacagagactccccagtggtac
ctgatgtagctggtctgcctgccccgcttcactcctgagcccaaatcagg
cccacacttggcctcactcactattaccttcccaggctcatggcgatgca
aggaagggctggctgagccaggcctgcaagtgaggttgctgcaggcacga
aagacccagccaaggtcagcagcaaaggccatcctgattcctttgcctcc
tgactcctctcagtgcctactccagtcccttcagctggccacttagttcc
cggattaccttcagcaaagcctttacagcctgcattaattttatccagga
gtaaaggcgggcaggccaaggcagtcgatggtctgaagatgccccacctt
aggctgaatcctgctctcagatttcaagactcactccacctaccaggata
ttctttagtcctaacaatgccaggaacccgcaacaatgacaggctgtgtt
ctagaaggttaggacattgacctaggttccgagatattccccgtgctcgg
cgtcgcaaggtcaagacgtgtgttcaaggctcataacctctcaagctgta
atgtataatcatctctaagggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94849741_94850609
seq2: B6Ng01-278M05.b_154_1015

seq1  GATGATTTTTCATGGCTGTGCTCCTGTGTGACTCTGGTCTTAACACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTTCATGGCTGTGCTCCTGTGTGACTCTGGTCTTAACACCTTT  50

seq1  GTGTGCAGTTCCACTGAGAGGACAGGGCCTGCCTTAGAGGATGCCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGTTCCACTGAGAGGACAGGGCCTGCCTTAGAGGATGCCCTGTG  100

seq1  GTCTGTTTCTCTGAGACATTCTGAAAGTAGTTTCAGTAGTAGTAGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTCTCTGAGACATTCTGAAAGTAGTTTCAGTAGTAGTAGGTTCA  150

seq1  GCTCACTTTATCCTTGAATGCAGATGCACCTCACGAGGAACGCTATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTATCCTTGAATGCAGATGCACCTCACGAGGAACGCTATCAGT  200

seq1  GTGGAGTGCTTCCTTTATAGAAGTGTTTTGAATTATGAACTCAAGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGCTTCCTTTATAGAAGTGTTTTGAATTATGAACTCAAGAACTT  250

seq1  TAATGGATGGGAGCAATTCTAATTTGTGTTTTTGATACTAACTTTGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATGGGAGCAATTCTAATTTGTGTTTTTGATACTAACTTTGGCAA  300

seq1  GGGGTGACTTTTAATAAATTCATCCATTTATCAAAGTCGTCAAATGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACTTTTAATAAATTCATCCATTTATCAAAGTCGTCAAATGTATT  350

seq1  TGGTTAAAGCTATTAATATCCTTTTAATCCTAACGGTGGAAGTCTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGCTATTAATATCCTTTTAATCCTAACGGTGGAAGTCTCTCAA  400

seq1  GGCTTTTCTTTCATTTCTTGTATTAGTGATTTGTACCTGTTTTGCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTTTCATTTCTTGTATTAGTGATTTGTACCTGTTTTGCTTTGA  450

seq1  GCAATCTAGCCAGAAGATTGCCAGTTTTACTTACCTTTATGAATAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTAGCCAGAAGATTGCCAGTTTTACTTACCTTTATGAATAACTGT  500

seq1  GCCCCCCATGCACCCCCACCCTGCCCAAGATCTCACTAAGTCGTCTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCATGCACCCCCACCCTGCCCAAGATCTCACTAAGTCGTCTAGGC  550

seq1  TACCACTGAAAGTGCCAGAGGCCAGAGTAGCCTTGAACTCATGACTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGAAAGTGCCAGAGGCCAGAGTAGCCTTGAACTCATGACTTTCC  600

seq1  TCCTTAAGGCCCCAGCAAACTGAGTTTGCAGGCCTTCA-CCACTAGGCCC  649
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TCCTTAAGG-CCCAGCAAACTGAGTTTGCAGGCCTTCACCCACTAGGCCC  649

seq1  AGGTTACAACAGCTTTCAACACCTACCTTCTT-GTGTTGAAGGGATGGCT  698
      |||||||||||||||||||||||||||||||| ||||||||||||||   
seq2  AGGTTACAACAGCTTTCAACACCTACCTTCTTGGTGTTGAAGGGATGCTC  699

seq1  CAGTGGTGAAGAGCAC-TGGC-TGTTCATCCAGAGGACCTGGGTTCAATT  746
      || ||||||||||||| |||| ||||||| ||   ||||||||||| |||
seq2  CATTGGTGAAGAGCACTTGGCTTGTTCATTCAAGAGACCTGGGTTCCATT  749

seq1  CCTAGCGTTCAC-ATGGCA-GCTCACAACTG-TCTGTAACTCCAGCTTAG  793
      |||||||||||| |||||| ||||||||||| ||||||   |||||| ||
seq2  CCTAGCGTTCACAATGGCAGGCTCACAACTGTTCTGTACTCCCAGCTAAG  799

seq1  AAATAAAACTATTTTCTTGGTAACATTTTGTTCTGACACATTAAATTACC  843
      ||||||| |   |||||||||| |   ||||| ||||||||  || ||| 
seq2  AAATAAACC--ATTTCTTGGTACC---TTGTT-TGACACAT--AAGTACA  841

seq1  ATTTTTCTTTCATTTTTCCTTTCTTT  869
      ||||    ||||||||||  ||||||
seq2  ATTT---CTTCATTTTTC--TTCTTT  862

seq1: chr1_94995278_94996326
seq2: B6Ng01-278M05.g_66_1089 (reverse)

seq1  CCACCCTTAGATAGGTGACTTATCACCATCTCACACCAGGCTGTTGAGAG  50
      ||||||||||  || ||| ||||    |  | ||| |      |||||||
seq2  CCACCCTTAG--AGATGA-TTAT----ACATTACAGC------TTGAGAG  37

seq1  GTTAGATGAGCGCCCTGGGAACCAGCTTCTGAGAACAGTGGCAGCCGGAG  100
      |||  |||||   ||| | |  ||  |  ||   ||  ||  |  | |||
seq2  GTT--ATGAG---CCTTGAACACACGTCTTG---ACCTTGCGACGCCGAG  79

seq1  CAGGGGGATGATACTCAGTAACTTAGTGTCATTGGTCCTAACTCTTTCTA  150
      || |||||  || ||| | ||| ||| |||| | |||||||  | |||||
seq2  CACGGGGAATAT-CTC-GGAACCTAG-GTCAAT-GTCCTAA--CCTTCTA  123

seq1  GAACA-GGCCTGTCATTGTTGCGGGTCCCTGGCATTGGTTAGGACT-AAG  198
      |||||  ||||||||||||||||||| ||||||||| ||||||||| |||
seq2  GAACACAGCCTGTCATTGTTGCGGGTTCCTGGCATT-GTTAGGACTAAAG  172

seq1  GATATCTGGGTAGGTGGATGTGAGTCCTGAAATCT--GAGCAGGACTCAG  246
       |||||  |||||||||| ||||||| ||||||||  |||||||| ||||
seq2  AATATCCTGGTAGGTGGA-GTGAGTCTTGAAATCTGAGAGCAGGATTCAG  221

seq1  -CTTAGGTGGGGCATCTCCAGACCATCTGACTGCCTTGGCCTGCCCG-CT  294
       || ||||||||||||| ||||||||| ||||||||||||||||||| ||
seq2  CCTAAGGTGGGGCATCTTCAGACCATC-GACTGCCTTGGCCTGCCCGCCT  270

seq1  CTACTCCTGGGATAAGATTAAATGCAGGCTGTAAAGGCTTTGCTGAAGGT  344
       ||||||| |||||| ||| ||||||||||||||||||||||||||||||
seq2  TTACTCCT-GGATAAAATT-AATGCAGGCTGTAAAGGCTTTGCTGAAGGT  318

seq1  AAT-CGGGAACTAAGT-GCCAGCTGAAGGGACTGGAGTAGGCACTGAGAG  392
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATCCGGGAACTAAGTGGCCAGCTGAAGGGACTGGAGTAGGCACTGAGAG  368

seq1  GAGTCAGGAGGCAAAGGAATCAGGATGGCCTTTGCTGCTGACCTTGGCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAGGCAAAGGAATCAGGATGGCCTTTGCTGCTGACCTTGGCTG  418

seq1  GGTCCTTCGTGCCTGCAGCAACCTCACTTGCAGGCCTGGCTCAGCCAGCC  492
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCGTGCCTGCAGCAACCTCACTTGCAGGCCTGGCTCAGCCAGCC  468

seq1  CTTCCTTGCATCGCCATGAGCCTGGGAAGGTAATAGTGAGTGAGGCCAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGCATCGCCATGAGCCTGGGAAGGTAATAGTGAGTGAGGCCAAG  518

seq1  TGTGGGCCCTGATTTGGGCTCAGGAGTGAAGCGGGGCAGGCAGACCAGCT  592
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGG-CCTGATTTGGGCTCAGGAGTGAAGCGGGGCAGGCAGACCAGCT  567

seq1  ACATCAGGTACCACTGGGGAGTCTCTGTACTGTCCAGTGTGGACAGTGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGTACCACTGGGGAGTCTCTGTACTGTCCAGTGTGGACAGTGGG  617

seq1  AAGCTCTGTCCTTAGATCTAAGAACCCTGGTTTTGCCCATGCTCTAGGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGTCCTTAGATCTAAGAACCCTGGTTTTGCCCATGCTCTAGGGA  667

seq1  ACATACAGGCCTCTATATGCTGCAAATCACATCTGCCAGCTCAGTGGCCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGGCCTCTATATGCTGCAAATCACATCTGCCAGCTCAGTGGCCC  717

seq1  AGGCCCATCCCTGTCCACAGGTGACCACTGGGCCCCTCCCAGTTCTTAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATCCCTGTCCACAGGTGACCACTGGGCCCCTCCCAGTTCTTAGA  767

seq1  GCGATGGACTCTGCCCAAAGGCAGTCTTTGTGCTGGATGATCTTCCTTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGACTCTGCCCAAAGGCAGTCTTTGTGCTGGATGATCTTCCTTGA  817

seq1  ACCCTCCTTGTCCTCCTGGACTTTTCTTAGGGCTAGTCAGCCTCATCTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTTGTCCTCCTGGACTTTTCTTAGGGCTAGTCAGCCTCATCTGC  867

seq1  TACCTTGTTTTTGCTGCCCCTTCCCCCAAACCCTGCACAAAAGCCCACAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTTTTTGCTGCCCCTTCCCCCAAACCCTGCACAAAAGCCCACAG  917

seq1  GAGGACTGGCCCTGCTACATTTGCAGAACACACAATCAACTGAAGAGACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGCCCTGCTACATTTGCAGAACACACAATCAACTGAAGAGACA  967

seq1  GAACAGACTGGATCCTTAGACCACCTAATCCCCTCTTACTGGCCTGGGAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACTGGATCCTTAGACCACCTAATCCCCTCTTACTGGCCTGGGAC  1017

seq1  TGAATTC  1049
      |||||||
seq2  TGAATTC  1024