BAC Information

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BAC

Clone NameB6Ng01-279B02
Chromosome1 (Build37)
Map Location 85,008,570 - 85,245,024
singlet/doubletdoublet
Overlap geneLOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B02.bB6Ng01-279B02.g
ACCGA079145GA079146
length1,079614
definitionB6Ng01-279B02.b B6Ng01-279B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,008,570 - 85,009,634)(85,244,415 - 85,245,024)
sequence
gaattcaattcccagcaaccacatggtgactcccaactacctgtaatggg
atctgatgccctcttctggtgtgtctgaagacagtgacagcctttccttt
cgctgctgcggccgcagccatgagtatgctcaggctacagaagaggcttg
cctctagtgtcctccgctgcgggaaaaagaaggtctggttggatcccaat
gagaccaatgaaatcgccaatgccaactcccgtcagcagatcaggaagct
gatcaaagacgggctgatcatccgcaagcctgtgactgtccattcccggg
ctcgttgccggaaaaacaccatggcccgacggaagggcaggcatatgggc
atagggaagaggaagggtactgccaatgctcggatgcctgagaaggtgac
ctggatgagaaggatgaggatcctgcgctggcttctcaggagataccggg
aatccaagattgaccgccatatgtatcacagcctgtacctgaaggtcaaa
gggaatgtgttcaaaaagaagcgcatcctcatggagcacatccacaagct
gaaggcagacaaggcccacaagaagctcctggctgaccaggctgaggctc
gcaggtctaagaccaaggaagcacgaaagcactgggaggagcgcctccag
gccaagaaggaagagatcatcaagactctgtccaaggaggaggagaccaa
gaaataaagcttccctcgtgtctgtacatagcggcctggctgtggcctca
cgtggatcagtctttaaaataaaacaagcctttgtctgttaaaaaaaaaa
aaaaaaaagacagtgacagtgtactcatatacataaaaataaataatttc
tttttaaaaaaaagaaaaaggaaaaaaatctagtgggcctatagcaaagg
cagaaagtagaaggaagaacttctgggaagaagaataagaactctgggag
agagacaccgggccacctttcctggtgagaagcacagggtccgccccggt
ccgagaggtttctgcctcagcttccggagggagcccacctgggttccgga
acctccgcaaaaggccaagcctgcatggg
gaattctttaaataaaaaagactgacagctctatgtgactataaaagact
ttgttttcttttcttcttagcaagaagaaaaaagcatccgaactggtcaa
attccaaaagaagacggcagaaaaaaaagccccgtcaagatgagatgatg
ggtaaggggatgctggagaagactccagcaagggggtacaggaggaggct
tcagcaaaggctgtagatctgatggagtttgttctgaactcactggatag
gcaggcacacaagagttctggtcagcacagcgaactggctttaaatttca
ccagacctgttttgccactgagtaaatggtgaactggaacatgttggaat
cctgttctgaggttacacagcccaaggtgaagggtgcagagtgtcaggtt
tcctctttatttatacacactaggatggcaaccatccttcctaactaaag
ggagagtaaataaactttgctactttgagataaggtgcagaacagtctgg
gtcctagccttgagaggcagttcagaggaaaagcccccagaaaagcttca
gaagggcgttctcatgccagtgggatgcagctgtccttcggggagggcag
cttccaatgtcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85008570_85009634
seq2: B6Ng01-279B02.b_47_1125

seq1  GAATTCAATTCCCAGCAACCACATGGTGACTCCCAACTACCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATGGTGACTCCCAACTACCTGTAATGGG  50

seq1  ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGCCTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGCCTTTCCTTT  100

seq1  CGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTACAGAAGAGGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTACAGAAGAGGCTTG  150

seq1  CCTCTAGTGTCCTCCGCTGGGGGAAAAAGAAGGTCTGGTTGGATCCCAAT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTCTAGTGTCCTCCGCTGCGGGAAAAAGAAGGTCTGGTTGGATCCCAAT  200

seq1  GAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCAGGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCAGGAAGCT  250

seq1  GATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACTGTCCATTCCCGGG  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGACGGGCTGATCATCCGCAAGCCTGTGACTGTCCATTCCCGGG  300

seq1  CTCGTTGCCGGAAAAACACCCTGGCCCGACGGAAGGGCAGGCATATGGGC  350
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCGTTGCCGGAAAAACACCATGGCCCGACGGAAGGGCAGGCATATGGGC  350

seq1  ATAAGGAAGAGGAAGGGTACTGCCAATGCTCGGATGCCTGAGAAGGTGAC  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGAGGAAGGGTACTGCCAATGCTCGGATGCCTGAGAAGGTGAC  400

seq1  CTGGATGAGAAGGATGAGGATCCTGCGCCGGCTTCTCAGGAGATACCGGG  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGATGAGAAGGATGAGGATCCTGCGCTGGCTTCTCAGGAGATACCGGG  450

seq1  AATCCAAGAAGATTGACCGCCATATGTATCACAGCCTGTACCTGAAGGTC  500
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCC---AAGATTGACCGCCATATGTATCACAGCCTGTACCTGAAGGTC  497

seq1  AAAGGGAATGTGTTCAAAAACAAGCGCATCCTCATGGAGCACATCCACAA  550
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGGGAATGTGTTCAAAAAGAAGCGCATCCTCATGGAGCACATCCACAA  547

seq1  GCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGG  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTGAAGGCAGACAAGGCCCACAAGAAGCTCCTGGCTGACCAGGCTGAGG  597

seq1  CTCCCAGGTCTAAGACCAAGGAAGCACGAAAGCGCTGGGAGGAGCGCCTC  650
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCGCAGGTCTAAGACCAAGGAAGCACGAAAGCACTGGGAGGAGCGCCTC  647

seq1  CAGGCCAAGAAGGAAGAGATCATCAAGACTCTGTCCAAGGAGGAGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAAGAAGGAAGAGATCATCAAGACTCTGTCCAAGGAGGAGGAGAC  697

seq1  CAAGAAATAAAGCTTCCCTTGTGTCTGTACATAGCGGCCTGGCTGTGGCC  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAGAAATAAAGCTTCCCTCGTGTCTGTACATAGCGGCCTGGCTGTGGCC  747

seq1  TCATGTGGATCAGTCTTTAAAATAAAACAAGCCTTTGTCTGTT-----AA  795
      ||| |||||||||||||||||||||||||||||||||||||||     ||
seq2  TCACGTGGATCAGTCTTTAAAATAAAACAAGCCTTTGTCTGTTAAAAAAA  797

seq1  AAAAAAAAAAAGACAGTGACAGTGTACTCATATACAT-AAAATAAATAA-  843
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  AAAAAAAAAAAGACAGTGACAGTGTACTCATATACATAAAAATAAATAAT  847

seq1  TTCTTTTT-AAAAAAAGAAAAAGGAAAAAAAGCTAGT-GGCCTATAGCAA  891
      |||||||| |||||||||||||||||||||| ||||| ||||||||||||
seq2  TTCTTTTTAAAAAAAAGAAAAAGGAAAAAAATCTAGTGGGCCTATAGCAA  897

seq1  AGGCAGAAAGTAGAAGGAAGAACTTCTGGGAAGA--GATAAGAACTCTGG  939
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  AGGCAGAAAGTAGAAGGAAGAACTTCTGGGAAGAAGAATAAGAACTCTGG  947

seq1  GAGAGAGACAACCGGCCACC-TTCCTGGTGAG-AGCACAGGGGTCCG-CC  986
      |||||||||| | ||||||| ||||||||||| |||||| ||||||| ||
seq2  GAGAGAGACACCGGGCCACCTTTCCTGGTGAGAAGCACA-GGGTCCGCCC  996

seq1  CGGCCTGAGAGGTTTCTGCCTCAGGCTCCGGAGGGAG-CCACCTTGGTTC  1035
      ||| | ||||||||||||||||||  ||||||||||| |||||| |||||
seq2  CGGTCCGAGAGGTTTCTGCCTCAGCTTCCGGAGGGAGCCCACCTGGGTTC  1046

seq1  CGGGA-CTCCGCACAGGGC--AGGCTGCATGGG  1065
      ||| | ||||||| | |||  || |||||||||
seq2  CGGAACCTCCGCAAAAGGCCAAGCCTGCATGGG  1079

seq1: chr1_85244415_85245024
seq2: B6Ng01-279B02.g_67_679 (reverse)

seq1  GGGACTTTGGAAGCTG-CCTCCCC-AAGGACAGCTGCAT-CCACTGGCAT  47
      ||||| |||||||||| ||||||| |||||||||||||| ||||||||||
seq2  GGGACATTGGAAGCTGCCCTCCCCGAAGGACAGCTGCATCCCACTGGCAT  50

seq1  GAGAACACCTTTCTGAAGCTTTTCTGGGGGCTTTTTCTCTGAACTGCCTG  97
      |||||| || ||||||||||||||||||||||||| ||||||||||||| 
seq2  GAGAACGCCCTTCTGAAGCTTTTCTGGGGGCTTTTCCTCTGAACTGCCTC  100

seq1  TCAGGGCTAGGACCCAGGCTCTTCTGTACCTTATCTCAAAGTAGCAAAGT  147
      ||| ||||||||||||| || ||||| |||||||||||||||||||||||
seq2  TCAAGGCTAGGACCCAGACTGTTCTGCACCTTATCTCAAAGTAGCAAAGT  150

seq1  TTATTTACTCTCCCTTTAGTTAGGAAGGATGGTTTCCATCCTAGTGTGCA  197
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTATTTACTCTCCCTTTAGTTAGGAAGGATGGTTGCCATCCTAGTGTGTA  200

seq1  TAAATAAAGAGGAAACCTGACACTCTGCACCCTTCACCTTGGGCTGTGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGAGGAAACCTGACACTCTGCACCCTTCACCTTGGGCTGTGTA  250

seq1  ACCTCAGAACAGGATTCCAACATGTTCCAGTTCACCATTTACTCAGTGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAACAGGATTCCAACATGTTCCAGTTCACCATTTACTCAGTGGC  300

seq1  AAAACAGGTCTGGTGAAATTTAAAGCCAGTTCGCTGTGCTGACCAGAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTCTGGTGAAATTTAAAGCCAGTTCGCTGTGCTGACCAGAACT  350

seq1  CCTGTGTGCCTGCCTATCCAGTGAGTTCAGAACGAACTCCATCAGATCTA  397
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTGTGTGCCTGCCTATCCAGTGAGTTCAGAACAAACTCCATCAGATCTA  400

seq1  CAGCCTTTGCTGAAGCATCCTCCTGTACCCCCTTGCTGGAGTCTCCTCCA  447
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CAGCCTTTGCTGAAGCCTCCTCCTGTACCCCCTTGCTGGAGTCTTCTCCA  450

seq1  GCATCCCCTTACCCATCATCTCATCTTGACGGGGCTTTTTTTTCTGCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATCCCCTTACCCATCATCTCATCTTGACGGGGCTTTTTTTTCTGCCGT  500

seq1  CTTCTTTTGGAATTTGACCAGTTCGGACGTTTTTTTCTTCTTGCTAAGAA  547
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  CTTCTTTTGGAATTTGACCAGTTCGGATGCTTTTTTCTTCTTGCTAAGAA  550

seq1  CAAAAGAAAACAAAGTCTTTTATAGTCACATAGAGCTGTCATTCTTTTTT  597
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAAAGAAAACAAAGTCTTTTATAGTCACATAGAGCTGTCAGTCTTTTTT  600

seq1  ATTTAAAGAATTC  610
      |||||||||||||
seq2  ATTTAAAGAATTC  613