BAC Information

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BAC

Clone NameB6Ng01-279G11
Chromosome1 (Build37)
Map Location 98,020,829 - 98,130,631
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279G11.bB6Ng01-279G11.g
ACCGA079394GA079395
length1,1461,104
definitionB6Ng01-279G11.b B6Ng01-279G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,020,829 - 98,021,979)(98,129,516 - 98,130,631)
sequence
gaattctcagagaatggaatacaaatgtctgaggaacactctttaaaagt
tcagcaacagaatacaagaaatggaagagagaatctcaggtgcagaagat
tccatagagaacatcgacacaacagtcaaagaaaatacaaaatgcaaaag
gatcctaactcaaaacatccaggtaatccaggacacaatgagaagaccaa
acctacggataataggaatcaacatcctttctgttacctaaccccagtta
gaacggccaagattaacatacaaagtgatggcagatgctgtggggaaaga
ggaacatttctccattgatggtggggggctagaacttatatggccattgt
ggagcttacactcaggaggcagaagcagccagctctctaagtttgaggcc
aggttggtttacagagtgatttctaggacagccagagatacatagagaaa
ttttgtctcaaagaaaacaaacaaaaccagacaaaacaatggagtgacct
tagtgggttaggattcggattttctgtctgctccaaatgtgttggagtga
gtcagaattttatttccattttatggtgtatttgttactttatggtgaaa
ctgccaagaactccatctacttccccacttagcctccttatcctacttaa
aatgaggaacctgaataatataatttacacttacttttggtgcatataca
taataggaactgttgagctctgcttccttagcctcaggctacctggtagc
aagtattaactattgcttccattagtgtactgattcctttccatccccag
gaaaagaccatccagtgggggctgcagggaaggtattttctttgaagctg
aaacagcaagtgaagccctttattttgccaggactcagacattatttcca
agttaaataattattctcggtaactgaaatttttaatggcaataactgta
gcttctgttactatgtttcattacagcaaaagcacatgaaacaaactttt
ctactgcagactatgtaaccatctcactaggtatgtattatgcaatttca
tactcattcttatttttacatcccctcctaaaatcaatcctttccaaaaa
agcctgatgcatgctgaaaaaaataacttgaaataaatcctaatta

gaattccagcgtggttgtaccagtttgcatgcagatattttgatgtatga
tagtgtttggggataagcttcaatagtaacgactacagtaatggaggcaa
atattaataaaaatatgagtttccattctaatatcagatatgctccagtt
atcattttatattttattgtgcatatattattgctattttctaaacttca
tcaaaatcaaatatttgtccttaatcaatataaatcactaaattatattt
taaaatataatctatattttatgtaatacccattgtacatactaaaattc
agtgtcattgtgggattccctactctacttgatctacaatatcaactata
aacttaagactaaggagatattgtcgaagaagggatagaaaaacatattt
agatttatctatttatatttattcttgaaaattcaagaaattgggggtat
ttttctctcaaaatttatgtcctttaagaatgaaatgtttatgacccaga
tttttttttaaagttaaattttgaaatttaaaactcaacttttaagatat
caacttaaaagcatataaattactttaaaattaaaataattagacattct
ttcttgtacaaaatgtattctattatttttgaagactatagtgtagttta
ttaaaatttataatttctgcccttcaaaaagcaaaattaggaaactaaaa
acaagtcaaattatatactaggaagaatattggcaacatacatagtgatc
aatgcatttgtatacagcatatataaaatgtttaatatcatgaagatgaa
taaactgattttaaattataaaaatatttgaggagacaattaaaagaaaa
tgaaatagcaatgacatacacacatgaacttatagtaaaaagcatattag
caaacaaaccagagaacaagtcattgcatagccaccatgacattaaaaca
atttaatataaatacatggacatgtgagtatttgcaagtattttaataga
cagtagcacacacagacataaaatggacgatagcttttgaaatagtaaga
acgtttctataaagttctataaagtttataaaaatagttatacctattat
aaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98020829_98021979
seq2: B6Ng01-279G11.b_49_1194

seq1  GAATTCTCAGAGAATGGAATACAAATGTCTGAGGAACACTCTTTAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGAATGGAATACAAATGTCTGAGGAACACTCTTTAAAAGT  50

seq1  TCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGAT  100

seq1  TCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAG  150

seq1  GATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAA  200

seq1  ACCTACGGATAATAGGAATCAACATCCTTTCTGTTACCTAACCCCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACGGATAATAGGAATCAACATCCTTTCTGTTACCTAACCCCAGTTA  250

seq1  GAACGGCCAAGATTAACATACAAAGTGATGGCAGATGCTGTGGGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGCCAAGATTAACATACAAAGTGATGGCAGATGCTGTGGGGAAAGA  300

seq1  GGAACATTTCTCCATTGATGGTGGGGGGCTAGAACTTATATGGCCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTTCTCCATTGATGGTGGGGGGCTAGAACTTATATGGCCATTGT  350

seq1  GGAGCTTACACTCAGGAGGCAGAAGCAGCCAGCTCTCTAAGTTTGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTACACTCAGGAGGCAGAAGCAGCCAGCTCTCTAAGTTTGAGGCC  400

seq1  AGGTTGGTTTACAGAGTGATTTCTAGGACAGCCAGAGATACATAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTTTACAGAGTGATTTCTAGGACAGCCAGAGATACATAGAGAAA  450

seq1  TTTTGTCTCAAAGAAAACAAACAAAACCAGACAAAACAATGGAGTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTCAAAGAAAACAAACAAAACCAGACAAAACAATGGAGTGACCT  500

seq1  TAGTGGGTTAGGATTCGGATTTTCTGTCTGCTCCAAATGTGTTGGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTTAGGATTCGGATTTTCTGTCTGCTCCAAATGTGTTGGAGTGA  550

seq1  GTCAGAATTTTATTTCCATTTTATGGTGTATTTGTTACTTTATGGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATTTTATTTCCATTTTATGGTGTATTTGTTACTTTATGGTGAAA  600

seq1  CTGCCAAGAACTCCATCTACTTCCCCACTTAGCCTCCTTATCCTACTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGAACTCCATCTACTTCCCCACTTAGCCTCCTTATCCTACTTAA  650

seq1  AATGAGGAACCTGAATAATATAATTTACACTTACTTTTGGTGCATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAACCTGAATAATATAATTTACACTTACTTTTGGTGCATATACA  700

seq1  TAATAGGAACTGTTGAGCTCTGCTTCCTTAGCCTCAGGCTACCTGGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAACTGTTGAGCTCTGCTTCCTTAGCCTCAGGCTACCTGGTAGC  750

seq1  AAGTATTAACTATTGCTTCCATTAGTGTACTGATTCCTTTCCATCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAACTATTGCTTCCATTAGTGTACTGATTCCTTTCCATCCCCAG  800

seq1  GAAAAGACCATCCAGTGGGGGCTGCAGGGAAGGTATTTTCTTTGAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACCATCCAGTGGGGGCTGCAGGGAAGGTATTTTCTTTGAAGCTG  850

seq1  AAACAGCAAGTGAAGCCCTTTATTTTGCCAGGACTCAGACATTATTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAGTGAAGCCCTTTATTTTGCCAGGACTCAGACATTATTTCCA  900

seq1  AGTTAAATAATTATTCTCGGTAACTGAAATTTTTAATGGCAATAACTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATAATTATTCTCGGTAACTGAAATTTTTAATGGCAATAACTGTA  950

seq1  GCTTCTGTTAACTATGTTTCATTACAGCAAAAGCACAATGAAACAAACTT  1000
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GCTTCTGTT-ACTATGTTTCATTACAGCAAAAGCAC-ATGAAACAAACTT  998

seq1  TTCTACTGCAGACTATGTAACCATCTCACTAGGTATGTTATATGCATTTT  1050
      ||||||||||||||||||||||||||||||||||||||  |||||| |||
seq2  TTCTACTGCAGACTATGTAACCATCTCACTAGGTATGTATTATGCAATTT  1048

seq1  CATACTCATTCTTATTTTTAACAT-CCCTCCTAAAAATCAAATCCTTCCA  1099
      ||||||||||||||||||| |||| ||||||| ||||||||  | |||||
seq2  CATACTCATTCTTATTTTT-ACATCCCCTCCT-AAAATCAATCCTTTCCA  1096

seq1  AAAAAG-CTGATGCATGGCTGAAAAAAAATACTTTAAAATAAAATACTAA  1148
      |||||| ||||||||| |||||||||||  |||| |||   |||| ||||
seq2  AAAAAGCCTGATGCAT-GCTGAAAAAAATAACTTGAAA--TAAATCCTAA  1143

seq1  TTA  1151
      |||
seq2  TTA  1146


seq1: chr1_98129516_98130631
seq2: B6Ng01-279G11.g_62_1165 (reverse)

seq1  TTTTATAATAAGTATAACTTATTTTTATAAAACTTTTATAGAAACTTTTA  50
      |||||||||| ||||||| ||||||||||||   |||||||||   ||||
seq2  TTTTATAATAGGTATAAC-TATTTTTATAAA--CTTTATAGAA--CTTTA  45

seq1  TAGAAACCGTCTTAACTATTTTCAAAAGCTATCCTTCCATTTTATGTCTG  100
      |||||||  |||| |||| ||||||||||||| | |||||||||||||||
seq2  TAGAAACGTTCTT-ACTA-TTTCAAAAGCTAT-CGTCCATTTTATGTCTG  92

seq1  TGTGGTGCTACTGTCTATTAAAATACTTGCAAATACTCAACATTGTCCAT  150
      ||| |||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TGT-GTGCTACTGTCTATTAAAATACTTGCAAATACTC-ACA-TGTCCAT  139

seq1  GTATTTATATTAAATTGTTTTAATTGTCATGGTGGCTATGCAATGACTTG  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTATTTATATTAAATTGTTTTAA-TGTCATGGTGGCTATGCAATGACTTG  188

seq1  TTCTCTGGTTTGTTTGCTAATATGCTTTTTACTATAAGTTCATGTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGTTTGTTTGCTAATATGCTTTTTACTATAAGTTCATGTGTGTA  238

seq1  TGTCATTGCTATTTCATTTTCTTTTAATTGTCTCCTCAAATATTTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGCTATTTCATTTTCTTTTAATTGTCTCCTCAAATATTTTTATA  288

seq1  ATTTAAAATCAGTTTATTCATCTTCATGATATTAAACATTTTATATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATCAGTTTATTCATCTTCATGATATTAAACATTTTATATATGC  338

seq1  TGTATACAAATGCATTGATCACTATGTATGTTGCCAATATTCTTCCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAAATGCATTGATCACTATGTATGTTGCCAATATTCTTCCTAGT  388

seq1  ATATAATTTGACTTGTTTTTAGTTTCCTAATTTTGCTTTTTGAAGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTGACTTGTTTTTAGTTTCCTAATTTTGCTTTTTGAAGGGCAG  438

seq1  AAATTATAAATTTTAATAAACTACACTATAGTCTTCAAAAATAATAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAATTTTAATAAACTACACTATAGTCTTCAAAAATAATAGAAT  488

seq1  ACATTTTGTACAAGAAAGAATGTCTAATTATTTTAATTTTAAAGTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTACAAGAAAGAATGTCTAATTATTTTAATTTTAAAGTAATTT  538

seq1  ATATGCTTTTAAGTTGATATCTTAAAAGTTGAGTTTTAAATTTCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTTAAGTTGATATCTTAAAAGTTGAGTTTTAAATTTCAAAATT  588

seq1  TAACTTTAAAAAAAAATCTGGGTCATAAACATTTCATTCTTAAAGGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAAAAAAAATCTGGGTCATAAACATTTCATTCTTAAAGGACAT  638

seq1  AAATTTTGAGAGAAAAATACCCCCAATTTCTTGAATTTTCAAGAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGAGAGAAAAATACCCCCAATTTCTTGAATTTTCAAGAATAAAT  688

seq1  ATAAATAGATAAATCTAAATATGTTTTTCTATCCCTTCTTCGACAATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGATAAATCTAAATATGTTTTTCTATCCCTTCTTCGACAATATC  738

seq1  TCCTTAGTCTTAAGTTTATAGTTGATATTGTAGATCAAGTAGAGTAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTCTTAAGTTTATAGTTGATATTGTAGATCAAGTAGAGTAGGGA  788

seq1  ATCCCACAATGACACTGAATTTTAGTATGTACAATGGGTATTACATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAATGACACTGAATTTTAGTATGTACAATGGGTATTACATAAAA  838

seq1  TATAGATTATATTTTAAAATATAATTTAGTGATTTATATTGATTAAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTATATTTTAAAATATAATTTAGTGATTTATATTGATTAAGGAC  888

seq1  AAATATTTGATTTTGATGAAGTTTAGAAAATAGCAATAATATATGCACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGATTTTGATGAAGTTTAGAAAATAGCAATAATATATGCACAA  938

seq1  TAAAATATAAAATGATAACTGGAGCATATCTGATATTAGAATGGAAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAAAATGATAACTGGAGCATATCTGATATTAGAATGGAAACTC  988

seq1  ATATTTTTATTAATATTTGCCTCCATTACTGTAGTCGTTACTATTGAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATTAATATTTGCCTCCATTACTGTAGTCGTTACTATTGAAGC  1038

seq1  TTATCCCCAAACACTATCATACATCAAAATATCTGCATGCAAACTGGTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCAAACACTATCATACATCAAAATATCTGCATGCAAACTGGTAC  1088

seq1  AACCACGCTGGAATTC  1116
      ||||||||||||||||
seq2  AACCACGCTGGAATTC  1104


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