BAC Information

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BAC

Clone NameB6Ng01-280E04
Chromosome1 (Build37)
Map Location 175,776,976 - 175,778,016
singlet/doubletsinglet
Overlap genenone
Upstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028
Downstream geneLOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280E04.bB6Ng01-280E04.g
ACCGA080031GA080032
length1,0831,093
definitionB6Ng01-280E04.b B6Ng01-280E04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtgcatacagagttacacagtgagatcctgtctcaagaaaac
aaaaccaaaacaaagaaaacaaaacaaagaaaaccaaacaaaatccaaga
aaaagggaaaaccaaataacacaaggaaaaggaaaaggagtaatcaacaa
actttctagagaaaggatacagttttatggtctttgagtctggaaaagat
ttctcagatataacagcaaaaataaataaataaacaaacaattaaataag
cgaattgctttgaaaatgtttaaaggagcctgtaacaagctatacaagtt
tgcattcccagagcaacgaataactgtttcgctctccacaccctcctaga
atgagctatctcttgtcttaatgaaattactcatttggacaggtacaggt
gaaataaagaaatggagttgattctcatttcctgatggctaaggactttg
aatatttaagtgcttctctgccttttgaaattcctctttttagcattctt
tgtcagatcttcagcccactttttttttcccatgatagttggcaaaaata
ttttcctccttttctcctcattaatttgtttatttattcacgacatcctg
atcgctgccaccctccgtaatttcctcctttttttttttttattggatat
attctttcggcctcccctccagaaaaccccattccattccctcactctgc
ctctatgagggtgcgtccccatccacacactcactcctacctggcattca
cttacactgaggcatcaaacccccacaggatcaagcaccgctcctcccat
tgatgtccaacaaggccatcctctgccacatacactgcaaagagccatga
gtcgttctatgtgtactgtttgggtgggtggtccagtccccgcgagcttc
agcatctggatagttgacactgttgcctcccccccacccatggggctgtg
ggccccctcagctccttcattcccttctccaactcatcccctggagaccc
tgtgcctcagcccaatggttggctgagaacatctgggcatctgtcttctg
tatttgtcaggctctgctagagcatttcaaaaa
gaattctttataattctcaagggcaaggtattgtggaactttaaaataat
atcttctttaaaaaacaaaaagggggagttataaaccacaaatttattta
aataatgttccttttaaattttaaaatttggatgccaaggaacactctgg
taagtgtctatggcaactaggtatacttatacctcggtgaaatggaagga
tccacttactgacatatggcatatcctaatcagatccttaatatggggaa
gaggacatgtttgttgtttttctgcaggatgctgcaggaatatgctagct
gccagagtgattggtgtgacgtgctgatgctgggaaaaaggatgatgctg
acctgtgagcttgctgagtaccctgacaatggtgacaggaaagctgtatt
ggtaatatgttcttgacccacctttgcttgccagtatctcaatttggaga
agcttccttgcttcaaactttgagacattgtgggacagagaacatggaga
ctgtggaaactgacttagaaaaattaatcaataggagaagatataattag
tcttttctttcctttactgtgaccagttattttgactcaatcatggactg
gtctagaaatcaatccagtattggagataccaaagatgaaggtggctcaa
aatccctatcagccagctgagttaacttggtgttcagtttccactcctac
tggagagcaagtgtttttctatcagttttcaaagccaccccccatacacc
tggtggccagactttttgttttgatctatgctaattagcagctgaattga
atacctggggacattcctgcagacaactttaatcttgttgcttctaaact
ttgactttgtatcttaagcagattggttgccttcacataggatagttttc
agcaagctcagctatttcactatgggcagtcattcactgctatgaggaaa
tgcttgtgtgcatatttcatatataatattccaagtcctttcgtgtcttt
ggttctgaatggggaaaaaaaaggaagtgccttattgaatgcctggtggg
tcagagaaaggcaactgggcgttcttgaccctctatccactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175776976_175778016
seq2: B6Ng01-280E04.b_42_1087

seq1  GAATTCCAGTGCATACAGAGTTACACAGTGAGATCCTGTCTCAAGAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCATACAGAGTTACACAGTGAGATCCTGTCTCAAGAAAAC  50

seq1  AAAACCAAAACAAAGAAAACAAAACAAAGAAAACCAAACAAAATCCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACAAAGAAAACAAAACAAAGAAAACCAAACAAAATCCAAGA  100

seq1  AAAAGGGAAAACCAAATAACACAAGGAAAAGGAAAAGGAGTAATCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAAACCAAATAACACAAGGAAAAGGAAAAGGAGTAATCAACAA  150

seq1  ACTTTCTAGAGAAAGGATACAGTTTTATGGTCTTTGAGTCTGGAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGAGAAAGGATACAGTTTTATGGTCTTTGAGTCTGGAAAAGAT  200

seq1  TTCTCAGATATAACAGCAAAAATAAATAAATAAACAAACAATTAAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGATATAACAGCAAAAATAAATAAATAAACAAACAATTAAATAAG  250

seq1  CGAATTGCTTTGAAAATGTTTAAAGGAGCCTGTAACAAGCTATACAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGCTTTGAAAATGTTTAAAGGAGCCTGTAACAAGCTATACAAGTT  300

seq1  TGCATTCCCAGAGCAACGAATAACTGTTTCGCTCTCCACACCCTCCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCAGAGCAACGAATAACTGTTTCGCTCTCCACACCCTCCTAGA  350

seq1  ATGAGCTATCTCTTGTCTTAATGAAATTACTCATTTGGACAGGTACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATCTCTTGTCTTAATGAAATTACTCATTTGGACAGGTACAGGT  400

seq1  GAAATAAAGAAATGGAGTTGATTCTCATTTCCTGATGGCTAAGGACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGAAATGGAGTTGATTCTCATTTCCTGATGGCTAAGGACTTTG  450

seq1  AATATTTAAGTGCTTCTCTGCCTTTTGAAATTCCTCTTTTTAGCATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAGTGCTTCTCTGCCTTTTGAAATTCCTCTTTTTAGCATTCTT  500

seq1  TGTCAGATCTTCAGCCCACTTTTTTTTTCCCATGATAGTTGGCAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATCTTCAGCCCACTTTTTTTTTCCCATGATAGTTGGCAAAAATA  550

seq1  TTTTCCTCCTTTTCTCCTCATTAATTTGTTTATTTATTCACGACATCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTTTTCTCCTCATTAATTTGTTTATTTATTCACGACATCCTG  600

seq1  ATCGCTGCCACCCTCCGTAATTTCCTCCTTTTTTTTTTTTTATTGGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGCCACCCTCCGTAATTTCCTCCTTTTTTTTTTTTTATTGGATAT  650

seq1  ATTCTTTCGGCCTCCCCTCCAGAAAACCCCATTCCATTCCCTCACTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCGGCCTCCCCTCCAGAAAACCCCATTCCATTCCCTCACTCTGC  700

seq1  CTCTATGAGGGTGCGTCCCCATCCACACACTCACTCCTACCTGGCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAGGGTGCGTCCCCATCCACACACTCACTCCTACCTGGCATTCA  750

seq1  CTTACACTGAGGCATCAAACCCCCACAGGATCAAGCACCGCTCCTCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTGAGGCATCAAACCCCCACAGGATCAAGCACCGCTCCTCCCAT  800

seq1  TGATGTCCAACAAGGCCATCCTCTGCCACATACACTGC-AAGAGCCATGA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATGTCCAACAAGGCCATCCTCTGCCACATACACTGCAAAGAGCCATGA  850

seq1  GTCGTTCTATGTGTACTGTTT-GGTGGGTGGTCCAGTCCCCGCGAGCTTC  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCGTTCTATGTGTACTGTTTGGGTGGGTGGTCCAGTCCCCGCGAGCTTC  900

seq1  AGCATCTGGATAGTTGACACTGTTGC--TCCCCCCACCCATGGGGCTGTG  946
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  AGCATCTGGATAGTTGACACTGTTGCCTCCCCCCCACCCATGGGGCTGTG  950

seq1  GGCCCCCTCAGCTCCTTCATTCCCTTCTCCAACTCATCCCCTGGAGACCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCTCAGCTCCTTCATTCCCTTCTCCAACTCATCCCCTGGAGACCC  1000

seq1  TGTG-CTCAGTCCAATGGTTGGCTGAGAGCATCTGGGCATCTGTCT  1041
      |||| ||||| ||||||||||||||||| |||||||||||||||||
seq2  TGTGCCTCAGCCCAATGGTTGGCTGAGAACATCTGGGCATCTGTCT  1046