BAC Information

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BAC

Clone NameB6Ng01-280H24
Chromosome1 (Build37)
Map Location 115,474,935 - 115,476,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H24.bB6Ng01-280H24.g
ACCGA080210GA080211
length9161,096
definitionB6Ng01-280H24.b B6Ng01-280H24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttacctctgcaccccatttttaatggggctatttgaatt
tctggagttcagcttcttggggtctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaatcctttcccaatctttttgtggcctt
ttttgtcttattgacagtgtcttttgccttacagaaggtttacaatttta
tgaggtctcatttgttattttttggtcttacagcaccagcctttgctttt
ctgtttaggaatttttttcccctgtgccaatatcttcgaggcttttcccc
actttctcctgtattaatttcagtgtctctggttctatttggagttcgtt
gatccacttagacttgaggtttgtacaaggagctaagaatggatcaattt
gcattcttctacatgataaccgccaggtgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatggttttagctcccttgtcaaagatcaa
gtgaccataggtgtgtggattcatttttttggtcttcaattctaagaagg
acacaagtatccatactttggtgttctttcttcttgagcttcatgtggtc
tgtaaattgtatcttgggtattccaaagcatctgggctaatatccactta
tcagtgagtgcataccatgtgtgttcttttgtgattgggttacctcactc
aggatgatattttctacatccatccattttgcctaagaatttcatgaatt
tcattgtttttaatagctgggtagtacttcattgtataaatttaccataa
tttctgtatccattcctctgtttgaggggacaaatggttcctttccacct
ttctggctattataaataaggctgttataaaacatagtggaagcatgtgc
tccttatttatttgtt

gaattcaggatgttagccgaaaaaacaagtgaaaggttcttcatgaaatt
tgatgtaatacccatagctggagtttatctggaaagtttggtgttgttca
tgagaggtaaactcagaattaaaataatgtgaagccgggaaaaacctttc
tccatggttcacaaagtgacagctccctttactcccatcccaaccctgga
gggtaaaacactgaaaatgatcagaagagtttagcacttgtggattgaac
aaagatttcttaggctcagatagttaaaccttggtccctagtgttggtac
attttagtggtggccttgatgaaggaagtataccactgggtgaatgctct
aagattttttaatctcatgccctttccagtttggtctcttctgtttcctt
cttggtatttaaaacataatttctcaggctgtggttcctgcggccatgac
tgctttgtgctgctatgtgagatggtatccttttttaaattttcccttta
ttattttgtatacctgcatgtatgtctgtgtaccatgtgatggcagtgtc
ctaagaagccataacacagcattgaacccccgagatcaagatctacaaac
agttgtgagctctcatatagattccagaaattgtatttgcgtctccatga
agagctggcagtgatctaaaccactgagctctatccccctgataatggac
tcttagccatctgaaatcgtaaatcaaaataaaatatttcttagataagt
caatttggtcatgaggttgtatcatagcaacagaaaaaaacaaaaccaaa
aaacaacaacaataacagagcactcaattctgcctgccttcccccaaggc
tcagaatcgtgatctaggttgagagtaagctgtacccagaatttaaaaat
ttgattgaagttctaaatagaataaggatcaaaccttttgaaactaggaa
ggaattatcttaattattagaaatgactacaaatatgacttcaactgtga
tgacataagagagcagcctcccacctcccagagaagatgggaaagaggta
tgaatgagttggctggtggcagtattgagaaatgaagtttcatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115474935_115476038
seq2: B6Ng01-280H24.g_68_1163 (reverse)

seq1  AATATGAAACTTTCATTTTCTCAATACCTGCCACCAGCCAAACTCATTCA  50
      |||||||||| |||| |||||||||| |||||||||||| ||||||||||
seq2  AATATGAAAC-TTCA-TTTCTCAATA-CTGCCACCAGCC-AACTCATTCA  46

seq1  TAACCCTCTTTCCCATCTCTTCCTGGGGAGGTGGGAGGCTGCTCTCTTAT  100
      ||  |||||||||||  |||||   |||||||||||||||||||||||||
seq2  TA--CCTCTTTCCCA--TCTTCTCTGGGAGGTGGGAGGCTGCTCTCTTAT  92

seq1  GTCATCACAGTTGAAGTCATATTTTTGTAGTCATTTCTTAATAATTAAGA  150
      |||||||||||||||||||||  |||||||||||||| ||||||||||||
seq2  GTCATCACAGTTGAAGTCATA--TTTGTAGTCATTTC-TAATAATTAAGA  139

seq1  TAATTCCTTCCTAGTTTC-AAAGGTTTGATCC-TATTCTATTTAGAACTT  198
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TAATTCCTTCCTAGTTTCAAAAGGTTTGATCCTTATTCTATTTAGAACTT  189

seq1  CAATCAAATTTTTAAATTCTGGGTACAGCTTACTCTCAACCTAGATCACG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAATTTTTAAATTCTGGGTACAGCTTACTCTCAACCTAGATCACG  239

seq1  ATTCTGAGCCTTGGGGGAAGGCAGGCAGAATTGAGTGCTCTGTTATTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGCCTTGGGGGAAGGCAGGCAGAATTGAGTGCTCTGTTATTGTT  289

seq1  GTTGTTTTTTGGTTTTG-TTTTTTCTGTTGCTATGATACAACCTCATGAC  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTTGGTTTTGTTTTTTTCTGTTGCTATGATACAACCTCATGAC  339

seq1  CAAATTGACTTATCTAAGAAATATTTTATTTTGATTTACGATTTCAGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGACTTATCTAAGAAATATTTTATTTTGATTTACGATTTCAGATG  389

seq1  GCTAAGAGTCCATTATCAGGGGGATAGAGCTCAGTGGTTTAGATCACTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGTCCATTATCAGGGGGATAGAGCTCAGTGGTTTAGATCACTGC  439

seq1  CAGCTCTTCATGGAGACGCAAATACAATTTCTGGAATCTATATGAGAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTCATGGAGACGCAAATACAATTTCTGGAATCTATATGAGAGCT  489

seq1  CACAACTGTTTGTAGATCTTGATCTCGGGGGTTCAATGCTGTGTTATGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGTTTGTAGATCTTGATCTCGGGGGTTCAATGCTGTGTTATGGC  539

seq1  TTCTTAGGACACTGCCATCACATGGTACACAGACATACATGCAGGTATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGACACTGCCATCACATGGTACACAGACATACATGCAGGTATAC  589

seq1  AAAATAATAAAGGGAAAATTTAAAAAAGGATACCATCTCACATAGCAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAGGGAAAATTTAAAAAAGGATACCATCTCACATAGCAGCA  639

seq1  CAAAGCAGTCATGGCCGCAGGAACCACAGCCTGAGAAATTATGTTTTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTCATGGCCGCAGGAACCACAGCCTGAGAAATTATGTTTTAAA  689

seq1  TACCAAGAAGGAAACAGAAGAGACCAAACTGGAAAGGGCATGAGATTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGAAGGAAACAGAAGAGACCAAACTGGAAAGGGCATGAGATTAAA  739

seq1  AAATCTTAGAGCATTCACCCAGTGGTATACTTCCTTCATCAAGGCCACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAGAGCATTCACCCAGTGGTATACTTCCTTCATCAAGGCCACCA  789

seq1  CTAAAATGTACCAACACTAGGGACCAAGGTTTAACTATCTGAGCCTAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGTACCAACACTAGGGACCAAGGTTTAACTATCTGAGCCTAAGA  839

seq1  AATCTTTGTTCAATCCACAAGTGCTAAACTCTTCTGATCATTTTCAGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTCAATCCACAAGTGCTAAACTCTTCTGATCATTTTCAGTGT  889

seq1  TTTACCCTCCAGGGTTGGGATGGGAGTAAAGGGAGCTGTCACTTTGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTCCAGGGTTGGGATGGGAGTAAAGGGAGCTGTCACTTTGTGAA  939

seq1  CCATGGAGAAAGGTTTTTCCCGGCTTCACATTATTTTAATTCTGAGTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGAAAGGTTTTTCCCGGCTTCACATTATTTTAATTCTGAGTTTA  989

seq1  CCTCTCATGAACAACACCAAACTTTCCAGATAAACTCCAGCTATGGGTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATGAACAACACCAAACTTTCCAGATAAACTCCAGCTATGGGTAT  1039

seq1  TACATCAAATTTCATGAAGAACCTTTCACTTGTTTTTTCGGCTAACATCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAATTTCATGAAGAACCTTTCACTTGTTTTTTCGGCTAACATCC  1089

seq1  TGAATTC  1104
      |||||||
seq2  TGAATTC  1096


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