BAC Information

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BAC

Clone NameB6Ng01-281D04
Chromosome1 (Build37)
Map Location 84,191,018 - 84,350,003
singlet/doubletdoublet
Overlap gene5033414K04Rik, LOC100039638
Upstream gene4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneDner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281D04.bB6Ng01-281D04.g
ACCGA080736GA080737
length1,0641,148
definitionB6Ng01-281D04.b B6Ng01-281D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,348,965 - 84,350,003)(84,191,018 - 84,192,165)
sequence
gaattcctttgatgaaggagagtgtctctcttggtagccacagactttgg
tatacagaaagagcttcattaacttagctacatgggattgaatgtggctt
ttcattgcttaggggaaggcaagtatattaagaatttgaggaggatatag
gatatggtgttcaggaaggatagtcaaccctgtgggcaggtcctgtgaaa
attcttcatattagggatggctagagatgcttcaagctacagaaatttcc
cccaaaatgcttctctccctgcatatgagatgaatgactgttaatgacag
taaatataattatctaatgatattcattagtatttgaactatttggctct
aacaacttgggaggtcattcccacttaaatcttgaaatgaatatcactca
tttagaactaacaaaccaatcaccagcaagaaaatctgcagattagatag
gcattttgttttatgtattgtacctccaagattgtgtatgtataggttcc
tgattctgtagggaattccacatctcttagttttccttttaaggagactg
aagctagaaggaaagggagacctccttgggccctcagtagtgagaaaaca
aagtttccaataaggatatgattgggcacagatgtggacagaagctatct
gtacttggtggataccttgttttcttaccctacacatcttatcctgggag
aaggcagtgctggagaatgtatatactggaagagctgtaaatattggggg
tgatgggtgatggacagtttgacctcttcagtatttccatttcaaaacat
ttaagtaatgggagagatcccttatgaagattagatcaatggacctaaaa
tatattcttcctaagagggcatggttcaacttgcatgaagggaccatctt
gtctgaggaagctcaattgtaaccactaaccacaagcttcttagaggaca
gtgcccatcattccacaagaactcaaagcatgaacaggcgttgctttcca
ttattccgttattagaaattatatgaatttcttgtatatgagcctccata
ctattctgttatag
gaattccagataagatgactgaagcccaagtcattcatttgtcctagaat
cttcctcttgagagccttctctactttagctttgcaggactggcttccat
taattctcacagtcaactatgctccaccagcacaaggacccatgaggaaa
acctgtacatgactggagattttggaatgcacttatgtttcccctgggga
acaaaggaaaagagaagagaaagaaagggaggggcagagaaatagcagga
aagggaaggggagggaagaactgggaagaagttgaaagaaaagcagtacc
actaagaacatgatgctgctaaagaaattctgattttatgccctgaatct
acaacaagaaatgattaaatgaattaattgctccttaaatctccttagtc
tttagtaagcatgcttttaaatatttatgtgaagtctatttctttcctgt
taaaatttccccaatggcaattactagagttctttgagtgccctgagaac
agagaacgtgtctaaggcaaacatggaaaacaggaacttcctagatgcta
ttggtgctcagaatctgtttgcaggttcttggcgtcttattcaggaatga
attaaaaacacgcctagattgcaaaatagcaaggatactacactcaaagc
aaagttcaatttagacaggagcacacagtcaggattgacagcaggccaca
tgtgtgaaggtgctcaggggccccaggttacaggctgggcttcatttaat
aggatttaaaggaaggaagggctagttattagggatgtagtttggctggc
tcttcgatttgattgacagattaaattctacaactattgtcagctgcata
tatccctttccataatatatccgattttaatcacatatattcctaattat
atatagaaataagatcgtcagtagaagagtttccctaaaagttcaccaaa
gtacaacaattttgctttattgcacacacacccaaaactagtttaggcct
cattttttatatctatttcatatgcaaacatgtcatatgatcaaataaca
ttctatatttgacagtgttagtaaagaagaaatttattgtacgagtaaca
aatataaggccaatgccagttgagggatcctaactggtgaacaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84348965_84350003
seq2: B6Ng01-281D04.b_42_1105 (reverse)

seq1  CTATAACAGAA---TATGGA-GCTCATATAC-AGAAATTTCTATAA-TTC  44
      |||||||||||   |||||| |||||||||| |||||||  ||||| |||
seq2  CTATAACAGAATAGTATGGAGGCTCATATACAAGAAATTCATATAATTTC  50

seq1  T-ATAACGGAAT-ATGG--AGC-ACGCCTG-TCATAC-TTGAGTCCTTGT  87
      | |||||||||| ||||  ||| ||||||| |||| | |||||| |||||
seq2  TAATAACGGAATAATGGAAAGCAACGCCTGTTCATGCTTTGAGTTCTTGT  100

seq1  -GAATGATGGCCACTGTCTCTTAAGAAGCTTGTGTTTAGTGGTTACAA-T  135
       ||||||||| |||||||   ||||||||||||| ||||||||||||| |
seq2  GGAATGATGGGCACTGTCCTCTAAGAAGCTTGTGGTTAGTGGTTACAATT  150

seq1  GAGCTTCCTCAG-CAAGATGGT-CCTTC-TGC-AGTTG-ACCATGCCCTC  180
      |||||||||||| ||||||||| ||||| ||| ||||| |||||||||||
seq2  GAGCTTCCTCAGACAAGATGGTCCCTTCATGCAAGTTGAACCATGCCCTC  200

seq1  TTAGGA--GATATATTTTAGGTCCA-TGATCT-ATCTTCATAAGGGATCT  226
      ||||||   |||||||||||||||| |||||| |||||||||||||||||
seq2  TTAGGAAGAATATATTTTAGGTCCATTGATCTAATCTTCATAAGGGATCT  250

seq1  CTCCCATTACTTAAATGTTTTGAAATGGAAATACTGAAGAGGTC-AACTG  275
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCCCATTACTTAAATGTTTTGAAATGGAAATACTGAAGAGGTCAAACTG  300

seq1  TCCATCACCCATCACCCCCAATATTTACAGCTCTTCCAGTATATACATTC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACCCATCACCCCCAATATTTACAGCTCTTCCAGTATATACATTC  350

seq1  TCCAGCACTGCCTTCTCCCAGGATAAGATGTGTAGGGTAAGAAAACAAGG  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACTGCCTTCTCCCAGGATAAGATGTGTAGGGTAAGAAAACAAGG  400

seq1  TATCCACCAAGTACAGATAGCTTCTGTCCACATCTGTGCCCAATCATATC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACCAAGTACAGATAGCTTCTGTCCACATCTGTGCCCAATCATATC  450

seq1  CTTATTGGAAACTTTGTTTTCTCACTACTGAGGGCCCAAGGAGGTCTCCC  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGAAACTTTGTTTTCTCACTACTGAGGGCCCAAGGAGGTCTCCC  500

seq1  TTTCCTTCTAGCTTCAGTCTCCTTAAAAGGAAAACTAAGAGATGTGGAAT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAGCTTCAGTCTCCTTAAAAGGAAAACTAAGAGATGTGGAAT  550

seq1  TCCCTACAGAATCAGGAACCTATACATACACAATCTTGGAGGTACAATAC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAGAATCAGGAACCTATACATACACAATCTTGGAGGTACAATAC  600

seq1  ATAAAACAAAATGCCTATCTAATCTGCAGATTTTCTTGCTGGTGATTGGT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAAATGCCTATCTAATCTGCAGATTTTCTTGCTGGTGATTGGT  650

seq1  TTGTTAGTTCTAAATGAGTGATATTCATTTCAAGATTTAAGTGGGAATGA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTTCTAAATGAGTGATATTCATTTCAAGATTTAAGTGGGAATGA  700

seq1  CCTCCCAAGTTGTTAGAGCCAAATAGTTCAAATACTAATGAATATCATTA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTTGTTAGAGCCAAATAGTTCAAATACTAATGAATATCATTA  750

seq1  GATAATTATATTTACTGTCATTAACAGTCATTCATCTCATATGCAGGGAG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTATATTTACTGTCATTAACAGTCATTCATCTCATATGCAGGGAG  800

seq1  AGAAGCATTTTGGGGGAAATTTCTGTAGCTTGAAGCATCTCTAGCCATCC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTTTGGGGGAAATTTCTGTAGCTTGAAGCATCTCTAGCCATCC  850

seq1  CTAATATGAAGAATTTTCACAGGACCTGCCCACAGGGTTGACTATCCTTC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATGAAGAATTTTCACAGGACCTGCCCACAGGGTTGACTATCCTTC  900

seq1  CTGAACACCATATCCTATATCCTCCTCAAATTCTTAATATACTTGCCTTC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACCATATCCTATATCCTCCTCAAATTCTTAATATACTTGCCTTC  950

seq1  CCCTAAGCAATGAAAAGCCACATTCAATCCCATGTAGCTAAGTTAATGAA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGCAATGAAAAGCCACATTCAATCCCATGTAGCTAAGTTAATGAA  1000

seq1  GCTCTTTCTGTATACCAAAGTCTGTGGCTACCAAGAGAGACACTCTCCTT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTGTATACCAAAGTCTGTGGCTACCAAGAGAGACACTCTCCTT  1050

seq1  CATCAAAGGAATTC  1039
      ||||||||||||||
seq2  CATCAAAGGAATTC  1064

seq1: chr1_84191018_84192165
seq2: B6Ng01-281D04.g_69_1216

seq1  GAATTCCAGATAAGATGACTGAAGCCCAAGTCATTCATTTGTCCTAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAGATGACTGAAGCCCAAGTCATTCATTTGTCCTAGAAT  50

seq1  CTTCCTCTTGAGAGCCTTCTCTACTTTAGCTTTGCAGGACTGGCTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTGAGAGCCTTCTCTACTTTAGCTTTGCAGGACTGGCTTCCAT  100

seq1  TAATTCTCACAGTCAACTATGCTCCACCAGCACAAGGACCCATGAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCACAGTCAACTATGCTCCACCAGCACAAGGACCCATGAGGAAA  150

seq1  ACCTGTACATGACTGGAGATTTTGGAATGCACTTATGTTTCCCCTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACATGACTGGAGATTTTGGAATGCACTTATGTTTCCCCTGGGGA  200

seq1  ACAAAGGAAAAGAGAAGAGAAAGAAAGGGAGGGGCAGAGAAATAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAAAAGAGAAGAGAAAGAAAGGGAGGGGCAGAGAAATAGCAGGA  250

seq1  AAGGGAAGGGGAGGGAAGAACTGGGAAGAAGTTGAAAGAAAAGCAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGGGAGGGAAGAACTGGGAAGAAGTTGAAAGAAAAGCAGTACC  300

seq1  ACTAAGAACATGATGCTGCTAAAGAAATTCTGATTTTATGCCCTGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACATGATGCTGCTAAAGAAATTCTGATTTTATGCCCTGAATCT  350

seq1  ACAACAAGAAATGATTAAATGAATTAATTGCTCCTTAAATCTCCTTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAAATGATTAAATGAATTAATTGCTCCTTAAATCTCCTTAGTC  400

seq1  TTTAGTAAGCATGCTTTTAAATATTTATGTGAAGTCTATTTCTTTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAGCATGCTTTTAAATATTTATGTGAAGTCTATTTCTTTCCTGT  450

seq1  TAAAATTTCCCCAATGGCAATTACTAGAGTTCTTTGAGTGCCCTGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCCCCAATGGCAATTACTAGAGTTCTTTGAGTGCCCTGAGAAC  500

seq1  AGAGAACGTGTCTAAGGCAAACATGGAAAACAGGAACTTCCTAGATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGTGTCTAAGGCAAACATGGAAAACAGGAACTTCCTAGATGCTA  550

seq1  TTGGTGCTCAGAATCTGTTTGCAGGTTCTTGGCGTCTTATTCAGGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTCAGAATCTGTTTGCAGGTTCTTGGCGTCTTATTCAGGAATGA  600

seq1  ATTAAAAACACGCCTAGATTGCAAAATAGCAAGGATACTACACTCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACACGCCTAGATTGCAAAATAGCAAGGATACTACACTCAAAGC  650

seq1  AAAGTTCAATTTAGACAGGAGCACACAGTCAGGATTGACAGCAGGCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAATTTAGACAGGAGCACACAGTCAGGATTGACAGCAGGCCACA  700

seq1  TGTGTGAAGGTGCTCAGGGGCCCCAGGTTACAGGCTGGGCTTCATTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAGGTGCTCAGGGGCCCCAGGTTACAGGCTGGGCTTCATTTAAT  750

seq1  AGGATTTAAAGGAAGGAAGGGCTAGTTATTAGGGATGTAGTTTGGCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAAAGGAAGGAAGGGCTAGTTATTAGGGATGTAGTTTGGCTGGC  800

seq1  TCTTCGATTTGATTGACAGATTAAATTCTACAACTATTGTCAGCTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGATTTGATTGACAGATTAAATTCTACAACTATTGTCAGCTGCATA  850

seq1  TATCCCTTTCCATAATATATCCGATTTTAATCACATATATTCCTAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTTCCATAATATATCCGATTTTAATCACATATATTCCTAATTAT  900

seq1  ATATAGAAATAAGATCGTCAGTAGAAGAGTTTCCCTAAAAGTTCACCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATAAGATCGTCAGTAGAAGAGTTTCCCTAAAAGTTCACCAAA  950

seq1  GTAC-ACAATTTTGCTTTATTGCACACACACCCAAAACTAGTTTAGGCCT  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACAATTTTGCTTTATTGCACACACACCCAAAACTAGTTTAGGCCT  1000

seq1  CA-TTTTTATATCTATTTCATATGCAAACATGTCAATATGATCAAAT-AC  1047
      || ||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CATTTTTTATATCTATTTCATATGCAAACATGTC-ATATGATCAAATAAC  1049

seq1  AATCTATATTTGACAGTTGTTAAGGTAAAG-AGAAATTTATTGTACAGAG  1096
      | |||||||||||||| |||||  |||||| ||||||||||||||| |||
seq2  ATTCTATATTTGACAG-TGTTA--GTAAAGAAGAAATTTATTGTAC-GAG  1095

seq1  GTACACATAT-AGCCAAATGCAGGTGGAGGGATCCTAAACTGTGAACAGG  1145
        ||| |||| || | |||||  || ||||||||||||   |||||||||
seq2  TAACAAATATAAGGCCAATGCCAGTTGAGGGATCCTAACTGGTGAACAGG  1145

seq1  TTG  1148
      |||
seq2  TTG  1148