BAC Information

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BAC

Clone NameB6Ng01-283D02
Chromosome1 (Build37)
Map Location 174,494,546 - 174,495,614
singlet/doubletsinglet
Overlap genenone
Upstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
Downstream geneSlamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283D02.bB6Ng01-283D02.g
ACCGA082215GA082216
length1,1811,075
definitionB6Ng01-283D02.b B6Ng01-283D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgcaccccatttttaaaagggttatttgattt
tctggcgtccagcttcttgagttctttgtatatattagatattagtccac
tatcagattgaggactggtaaagatccttcccaaatctgttggtggcctt
tttgtcgtattgacagtatcatttgccttacagaagctttgcagtttcat
taggtcccatttgtctgttctcgatcttacagcacaagccattgctgttg
tgttcaggaatttttcccctgtgcccatatcttcaagacttttacccact
ttctcctcaataagtttcagtgtgtctgcttttatgtggaattccttgat
ccacttagacttgagctttgtgcaaggagataagaatggatcaattcgca
ttcatctactggataactgccagttgagccagaaccatttgttgaaaatg
ctgtcatttttccactggatggttttagatcctttgttaaagatcaagtg
accataggtgtgtgggttcgtttctgggtcttcaattctattccattgat
ctacctgtctgtcgctgtaccagtaccaagcagtttttatcacaattgct
ctgtagtacagcttgaggtcaggcatggtgattccaccagaggttctttt
attgttgagaatagtttttactatcctaggttttttgtcattccgaatga
acttgcaaattgccctttctaactctatgaagaattgagttggaattttg
atggggatcacattgaatctgtagattgctttcagcaagatagctatttt
tactatatgaatcctgccaatccatgagtatgggagatcttgccatcttc
tgagatcatcttcaacttctttcttcagacacttgaagttcttctcatac
agatctttcagttccttagttagagtcataccaaggtattttatattatt
tattatatattataatatttttcactattgtgaagggtgtcggttcccta
atttctttctcatcctgtgtctttatgtaagagaaaggccactgatttgt
tgagttaattttatatcacgtactgctgcactgaaagcttgttatcaagt
ctaggagtcctctgggtgaagttaacgtcactgtctaaactatcaaattc
atcctgcagaaagagggaattttgagacctc
gaattcccgctataacgttcctgatgagggctatcccaagcccttctggc
cagaggaccttgagtggcagctcactgcctcctgaagcgtgagcctttgg
ttgtcaagatgagttggatgggaggcgggtccaggtggcagaagagtagg
gtcagagagccaggtcagagaagatggttggtgcagaagaaagactgagt
aggcgagagaggagaaggcaactggtgcagagaagagatcaggcagaatg
aaaacaggaaactgttgagccaggagaagctgagccgagccagagaagat
agcattaggagacagaagaacacacaaagtagagaaagagaaaaacaaag
aaaacctacaaagatctcatagagtattttcttctattgaccatgcacag
tttttattccttggtccaagatctacttgtggggagcccagaacatccaa
tttcaactcagtggcctctggtgggccacacagttgcatttcacaaagga
caccagtctggttagtaggctaagggaccttcagaagttcacagtacttc
aaggccacttagttcggcccagctacctgcttgttgagagcctagacttt
gtttctcttctcctcaaaaggaactgctcaccctaatcgtccttctcctg
tcccaggacaacatacagtaggtgtgcataaggctcagagtatcctgcct
ggtagaaaatagcctggaaacttctaagatgggatcagggcttgtcaagg
agtggttggcagtgttgtctactctgtcctgacagtgtttggcaggatag
acaagagagactgaatgtgggggcaaagggaatcaaagaccacttaccta
aaagttggggaatgggcactggctgtataggatgcaggggaagagagtta
agtagggaggagcagagaaactgtcaatcaccctggccatgtttatgagt
gcatttcagatgacttattcatagatagagtttagctccttccaggcagg
tcctgtgcccggccaccactttgccctaaggccaagtgacctgaataacg
ctgaaatgagaaatggtgtatacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174494546_174495614
seq2: B6Ng01-283D02.g_65_1139

seq1  GAATTCCCGCTATAACGTTCCTGATGAGGGCTATCCCAAGCCCTTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGCTATAACGTTCCTGATGAGGGCTATCCCAAGCCCTTCTGGC  50

seq1  CAGAGGACCTTGAGTGGCAGCTCACTGCCTCCTGAAGCGTGAGCCTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACCTTGAGTGGCAGCTCACTGCCTCCTGAAGCGTGAGCCTTTGG  100

seq1  TTGTCAAGATGAGTTGGATGGGAGGCGGGTCCAGGTGGCAGAAGAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGATGAGTTGGATGGGAGGCGGGTCCAGGTGGCAGAAGAGTAGG  150

seq1  GTCAGAGAGCCAGGTCAGAGAAGATGGTTGGTGCAGAAGAAAGACTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGCCAGGTCAGAGAAGATGGTTGGTGCAGAAGAAAGACTGAGT  200

seq1  AGGCGAGAGAGGAGAAGGCAACTGGTGCAGAGAAGAGATCAGGCAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGAGAGGAGAAGGCAACTGGTGCAGAGAAGAGATCAGGCAGAATG  250

seq1  AAAACAGGAAACTGTTGAGCCAGGAGAAGCTGAGCCGAGCCAGAGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGAAACTGTTGAGCCAGGAGAAGCTGAGCCGAGCCAGAGAAGAT  300

seq1  AGCATTAGGAGACAGAAGAACACACAAAGTAGAGAAAGAGAAAAACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGGAGACAGAAGAACACACAAAGTAGAGAAAGAGAAAAACAAAG  350

seq1  AAAACCTACAAAGATCTCATAGAGTATTTTCTTCTATTGACCATGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACAAAGATCTCATAGAGTATTTTCTTCTATTGACCATGCACAG  400

seq1  TTTTTATTCCTTGGTCCAAGATCTACTTGTGGGGAGCCCAGAACATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCCTTGGTCCAAGATCTACTTGTGGGGAGCCCAGAACATCCAA  450

seq1  TTTCAACTCAGTGGCCTCTGGTGGGCCACACAGTTGCATTTCACAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCAGTGGCCTCTGGTGGGCCACACAGTTGCATTTCACAAAGGA  500

seq1  CACCAGTCTGGTTAGTAGGCTAAGGGACCTTCAGAAGTTCACAGTACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCTGGTTAGTAGGCTAAGGGACCTTCAGAAGTTCACAGTACTTC  550

seq1  AAGGCCACTTAGTTCGGCCCAGCTACCTGCTTGTTGAGAGCCTAGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACTTAGTTCGGCCCAGCTACCTGCTTGTTGAGAGCCTAGACTTT  600

seq1  GTTTCTCTTCTCCTCAAAAGGAACTGCTCACCCTAATCGTCCTTCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTCTCCTCAAAAGGAACTGCTCACCCTAATCGTCCTTCTCCTG  650

seq1  TCCCAGGACAACATACAGTAGGTGTGCATAAGGCTCAGAGTATCCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGACAACATACAGTAGGTGTGCATAAGGCTCAGAGTATCCTGCCT  700

seq1  GGTAGAAAATAGCCTGGAAACTTCTAAGATGGGATCAGGGCTTGTCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAATAGCCTGGAAACTTCTAAGATGGGATCAGGGCTTGTCAAGG  750

seq1  AGTGGTTGGCAGTGTTGTCTACTCTGTCCTGACAGTGTTTGGCAGGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGGCAGTGTTGTCTACTCTGTCCTGACAGTGTTTGGCAGGATAG  800

seq1  ACAAGAGAGACTGAATGTGGGGGCAAAGGGAATCAAAGACCACTTACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGACTGAATGTGGGGGCAAAGGGAATCAAAGACCACTTACCTA  850

seq1  AAAGTTGGGGAATGGGCACTGGCTGTATAGGATGCAGGGGGAAGAGAGTT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGTTGGGGAATGGGCACTGGCTGTATAGGATGCA-GGGGAAGAGAGTT  899

seq1  AAGTAGGGAGGAGCAGAGAAACTGTCAATCA-CCTGGCCATGTTTATGAG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTAGGGAGGAGCAGAGAAACTGTCAATCACCCTGGCCATGTTTATGAG  949

seq1  TGCATTTCAGATGACTTATTCATAGATAGAG-TTAGCTC--TTCAGCAGG  996
      ||||||||||||||||||||||||||||||| |||||||  | |||   |
seq2  TGCATTTCAGATGACTTATTCATAGATAGAGTTTAGCTCCTTCCAGGCAG  999

seq1  GCCCTGTGCCCGG-CACACTTTTGCCCTAAGG-CAGGTGA-CTG-ATAAA  1042
      | ||||||||||| |||   |||||||||||| || |||| ||| |||| 
seq2  GTCCTGTGCCCGGCCACCACTTTGCCCTAAGGCCAAGTGACCTGAATAAC  1049

seq1  GCTGAAATGAGGAAAAGGTGTATACAC  1069
      |||||||||| |||| |||||||||||
seq2  GCTGAAATGA-GAAATGGTGTATACAC  1075