BAC Information

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BAC

Clone NameB6Ng01-283F20
Chromosome1 (Build37)
Map Location 135,350,612 - 135,482,014
singlet/doubletdoublet
Overlap geneLOC667371
Upstream geneRipk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Downstream geneSnrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283F20.bB6Ng01-283F20.g
ACCGA082345GA082346
length1,152738
definitionB6Ng01-283F20.b B6Ng01-283F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,350,612 - 135,351,783)(135,481,277 - 135,482,014)
sequence
gaattccattggcttctaaattatctttcttttcctttgtcttttgcctt
tccttctttttctttttgtttgagatgttgtctcctgtagcaatgtagca
cgagttgccctcgaactccatacatacctcaggctggccttgaacttttt
tttttctgagaaagggtttctctgtgtagccctggctattctgaaacttc
ctctgtagaccaaactatccttaaacttagtgatcccccagcctctgcct
ccccagtgcttaggaataaaggtatgtgccactacatctggctggcatca
catctggctggttttgagttcttgaccctctgccagctcctgagttctga
gcttacaagagtgtaccatgatacccggttctttcctccagggtatttgc
tagccatgtatgcctttattaatgaaaatttatcatttcttggcattttg
gctaagatcaaatgtattgatggtcatttaacatttgtcccaataccaca
cattttcttttttagatttatttattttgtgtgcatgagtacacatgtgc
atgtctggtcccttcagaggacaggagacatgggatcttctagaattgga
ggtaaaggttgttataaacttgtctgcaggtgctggcaaccaagtccagg
ccctctgtaagaacaccaagtgctcttagctgctgaaccatttcttcagc
taccacccccactacatttctatcacgacgatggacattccccctgtatt
aggctgtatctcgaggcagcccatgagaaagatggaatataaattgcctt
tgggcatgagacccatcccccactggagctctgagataccaccgtgtttt
aaaattaccttggtatatttatatattagtgttcttttctattttaaaaa
tgcattcccattgtgctttgactcactggggcaaagctgttctcttggtt
gtaccaataggcttttcaatcaaaaccaagaaaaaaaaatccatgttcta
ttctttatatatctctgctctcttttttttttccagaaataaatattttt
ctgatgaattggcaattttttgagaaacatgtttttggtactggaaggtt
ggctgtatgtgcctatatgcttggacagccttgttcctgaggaagccttt
tt
gaattcccactggtgccatattgctggattgttcctttaaattgtctggc
tgtcctggacctcggtctgtacaccaggctggccttgaactcagacaccc
atctgcctctgcctcccaagtgcctggattaaaagcgtgcgccaccaccg
cctgtcagctctgtgcctctgcaatcattcaattactgagacttcccgaa
gcctttgggttgactgcttgacttgtgttctcattgccaactgtgcctgg
tttttcttcagcatttctttgttaaattcctcctttatattttgtgttgt
ctttcttatttcattcaggtatttgtttcttgactgggagttcttttttt
taattttttatttcttagaacacagttattgttttgagttctttgggatt
tctaatttattctccctagttgctcttactgtagggttagtaaattttgg
agtagttctgctgcttgggttgtttgtttgtttgtttgtctgtttgtttt
gtttctttgtatttctgctttggggctgatctgcctcgggtttcagttga
agtattttcaggattcaagtggggcatggctgtggtagagtgaatatgcc
cactatacaaattgtcacacagccaaggaacaacagtggttctttgactt
cagtaattgttggaggataaacgatcaaaaataacatggtttgaattcaa
attttagttaatagtattaggagtggaagggaaggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135350612_135351783
seq2: B6Ng01-283F20.b_45_1196

seq1  GAATTCCATTGGCTTCTAAATTATCTTTCTTTTCCTTTGTCTTTTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGGCTTCTAAATTATCTTTCTTTTCCTTTGTCTTTTGCCTT  50

seq1  TCCTTCTTTTTCTTTTTGTTTGAGATGTTGTCTCCTGTAGCAATGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTTCTTTTTGTTTGAGATGTTGTCTCCTGTAGCAATGTAGCA  100

seq1  CGAGTTGCCCTCGAACTCCATACATACCTCAGGCTGGCCTTGAACTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTGCCCTCGAACTCCATACATACCTCAGGCTGGCCTTGAACTTTTT  150

seq1  TTTTTCTGAGAAAGGGTTTCTCTGTGTAGCCCTGGCTATTCTGAAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGAAAGGGTTTCTCTGTGTAGCCCTGGCTATTCTGAAACTTC  200

seq1  CTCTGTAGACCAAACTATCCTTAAACTTAGTGATCCCCCAGCCTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAAACTATCCTTAAACTTAGTGATCCCCCAGCCTCTGCCT  250

seq1  CCCCAGTGCTTAGGAATAAAGGTATGTGCCACTACATCTGGCTGGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCTTAGGAATAAAGGTATGTGCCACTACATCTGGCTGGCATCA  300

seq1  CATCTGGCTGGTTTTGAGTTCTTGACCCTCTGCCAGCTCCTGAGTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTGGTTTTGAGTTCTTGACCCTCTGCCAGCTCCTGAGTTCTGA  350

seq1  GCTTACAAGAGTGTACCATGATACCCGGTTCTTTCCTCCAGGGTATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAAGAGTGTACCATGATACCCGGTTCTTTCCTCCAGGGTATTTGC  400

seq1  TAGCCATGTATGCCTTTATTAATGAAAATTTATCATTTCTTGGCATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGTATGCCTTTATTAATGAAAATTTATCATTTCTTGGCATTTTG  450

seq1  GCTAAGATCAAATGTATTGATGGTCATTTAACATTTGTCCCAATACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATCAAATGTATTGATGGTCATTTAACATTTGTCCCAATACCACA  500

seq1  CATTTTCTTTTTTAGATTTATTTATTTTGTGTGCATGAGTACACATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTTTTAGATTTATTTATTTTGTGTGCATGAGTACACATGTGC  550

seq1  ATGTCTGGTCCCTTCAGAGGACAGGAGACATGGGATCTTCTAGAATTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGTCCCTTCAGAGGACAGGAGACATGGGATCTTCTAGAATTGGA  600

seq1  GGTAAAGGTTGTTATAAACTTGTCTGCAGGTGCTGGCAACCAAGTCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGTTGTTATAAACTTGTCTGCAGGTGCTGGCAACCAAGTCCAGG  650

seq1  CCCTCTGTAAGAACACCAAGTGCTCTTAGCTGCTGAACCATTTCTTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTAAGAACACCAAGTGCTCTTAGCTGCTGAACCATTTCTTCAGC  700

seq1  TACCACCCCCACTACATTTCTATCACGACGATGGACATTCCCCCTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCCCACTACATTTCTATCACGACGATGGACATTCCCCCTGTATT  750

seq1  AGGCTGTATCTCGAGGCAGCCCATGAGAAAGATGGAATATAAATTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTATCTCGAGGCAGCCCATGAGAAAGATGGAATATAAATTGCCTT  800

seq1  TGGGCATGAGACCCATCCCCCACTGGAGCTCTGAGATACCACCGTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGAGACCCATCCCCCACTGGAGCTCTGAGATACCACCGTGTTTT  850

seq1  AAAATTACCTTGGTATATTTATATATTAGTGTTCTTTTCTATTTTAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCTTGGTATATTTATATATTAGTGTTCTTTTCTATTTTAAAAA  900

seq1  TGCATTCCCATTGTGCTTTGACTCACTGGGGCAAAGCTGTTCTCTTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCATTGTGCTTTGACTCACTGGGGCAAAGCTGTTCTCTTGGTT  950

seq1  GTACCAATAGGCTTTTCAATCAAAACCAAGAAAAAAAATTCCATGTTTCT  1000
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTACCAATAGGCTTTTCAATCAAAACCAAGAAAAAAAAATCCATG-TTCT  999

seq1  ATTTCTTTATATATCTCTGCTTCTTCCTTTTTTTTTCCAGGAAAATAAAT  1050
      | |||||||||||||||||||   || |||||||||||||  ||||||||
seq2  A-TTCTTTATATATCTCTGCT--CTCTTTTTTTTTTCCAG--AAATAAAT  1044

seq1  A-TTTTCTGAATTGAATTGGAAATTTTTTGAGAAACATGTTTTTTGTACC  1099
      | ||||||||  |||||||| ||||||||||||||||||||||| ||| |
seq2  ATTTTTCTGA--TGAATTGGCAATTTTTTGAGAAACATGTTTTTGGTA-C  1091

seq1  TTGTATGTTTGCTGTTATTGTTGCTAAATAAGTGCTTTTGGTGACAGGCC  1149
      | | | ||| |||||   |||  ||| |    |||||     |||| |||
seq2  TGGAAGGTTGGCTGT--ATGTGCCTATA----TGCTT----GGACA-GCC  1130

seq1  TTTTGTTCTGAGGAAGGCTTTTT  1172
      || | | ||||||||| ||||||
seq2  TTGT-TCCTGAGGAAGCCTTTTT  1152

seq1: chr1_135481277_135482014
seq2: B6Ng01-283F20.g_65_802 (reverse)

seq1  ACGCCTTCCCTTCCACTCCTAATACTATTAACTAAAATTTGAATTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTCCCTTCCACTCCTAATACTATTAACTAAAATTTGAATTCAAAC  50

seq1  CATGTTATTTTTGATCGTTTATCCTCCAACAATTACTGAAGTCAAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTTTGATCGTTTATCCTCCAACAATTACTGAAGTCAAAGAAC  100

seq1  CACTGTTGTTCCTTGGCTGTGTGACAATTTGTATAGTGGGCATATTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGTTCCTTGGCTGTGTGACAATTTGTATAGTGGGCATATTCACT  150

seq1  CTACCACAGCCATGCCCCACTTGAATCCTGAAAATACTTCAACTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACAGCCATGCCCCACTTGAATCCTGAAAATACTTCAACTGAAACC  200

seq1  CGAGGCAGATCAGCCCCAAAGCAGAAATACAAAGAAACAAAACAAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAGATCAGCCCCAAAGCAGAAATACAAAGAAACAAAACAAACAGA  250

seq1  CAAACAAACAAACAAACAACCCAAGCAGCAGAACTACTCCAAAATTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAACCCAAGCAGCAGAACTACTCCAAAATTTACT  300

seq1  AACCCTACAGTAAGAGCAACTAGGGAGAATAAATTAGAAATCCCAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACAGTAAGAGCAACTAGGGAGAATAAATTAGAAATCCCAAAGAA  350

seq1  CTCAAAACAATAACTGTGTTCTAAGAAATAAAAAATTAAAAAAAAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACAATAACTGTGTTCTAAGAAATAAAAAATTAAAAAAAAGAACT  400

seq1  CCCAGTCAAGAAACAAATACCTGAATGAAATAAGAAAGACAACACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCAAGAAACAAATACCTGAATGAAATAAGAAAGACAACACAAAAT  450

seq1  ATAAAGGAGGAATTTAACAAAGAAATGCTGAAGAAAAACCAGGCACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAGGAATTTAACAAAGAAATGCTGAAGAAAAACCAGGCACAGTT  500

seq1  GGCAATGAGAACACAAGTCAAGCAGTCAACCCAAAGGCTTCGGGAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGAGAACACAAGTCAAGCAGTCAACCCAAAGGCTTCGGGAAGTCT  550

seq1  CAGTAATTGAATGATTGCAGAGGCACAGAGCTGACAGGCGGTGGTGGCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTGAATGATTGCAGAGGCACAGAGCTGACAGGCGGTGGTGGCGC  600

seq1  ACGCTTTTAATCCAGGCACTTGGGAGGCAGAGGCAGATGGGTGTCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTTAATCCAGGCACTTGGGAGGCAGAGGCAGATGGGTGTCTGAGT  650

seq1  TCAAGGCCAGCCTGGTGTACAGACCGAGGTCCAGGACAGCCAGACAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTGTACAGACCGAGGTCCAGGACAGCCAGACAATTT  700

seq1  AAAGGAACAATCCAGCAATATGGCACCAGTGGGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACAATCCAGCAATATGGCACCAGTGGGAATTC  738