BAC Information

Click to search

BAC

Clone NameB6Ng01-283J23
Chromosome1 (Build37)
Map Location 71,106,426 - 71,187,088
singlet/doubletdoublet
Overlap geneBard1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283J23.bB6Ng01-283J23.g
ACCGA082539GA082540
length6531,153
definitionB6Ng01-283J23.b B6Ng01-283J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,186,436 - 71,187,088)(71,106,426 - 71,107,589)
sequence
gaattctaaggcataggtaagtggctgctcactgtttcttccatgttgtg
cataagtgcttttgaattttagttttctttggctattccctttgttgttg
ttgttggggaatatcaaaatgaaaggttacaacagttgagtttctggata
ttaactcataacagttgagtttctggatattaactcgttttatttgcgat
tctaggatcagacaatacttcactctataaactacaataagtcctctgat
gagctgaggtgaacaggctggtggtatagctgggaaaaggcagtggaaag
caagagaaaggagcagaacacctgtcacgtcaaaagtgctctccttgact
ttgccagtgcttggcaaacacagcagtggatgctcacagtcatctattgg
atggaacacagggcccccaatataggagctagagaaagtacccaagagct
gaaggggtctgcaaccctataggtagaacaacgatatgaactaatcagta
cccccagagcttgtatctctagctgcatatgtagcagaagatagcctagt
tggccatcattggaaagagaggccccttggtctagcaaactttatatgcc
ccagtacaggggaacaccagggccaagaagtgggagtgggtgggtagggg
agc
gaattcataagacagtggccagcaaatagtactagctcagtgactgctaa
tactgctaaatttgcaccattgagagacagacagaaaaaagaaataagaa
aacatgacaggttatacttggagtgcaaatcatattataatttcccccgc
ttgatgatacatttcacacacattctacaataatagtttggatgcttaat
aatggaaaatacattgaagcataattttttaaaaatattaaaataagaat
cttcatttccctatatggtacaatctaaacataaagagtatgagacaggg
gctgaaaatgcttcttagccaagattccttcatatcatcaagacggatga
agaaggcgtccttcagttattgaagggttaaactgcggtgtttacggtct
cgctctacccaagagagtgttcagacaataaattcctctaatgtcctttc
ccatacaggagtgacctacctacagctgtgccctgaatcagctgtaacaa
caagataaagtaaggagatgcaaaaacaaaatttttgtttgcatatgtag
atcatccaacattcaaaaacataaactaggcatttttactagaactaaac
ttacaagacatgcccaaatgtcacgacaatggatgaacaggatcctttct
gaacaactataaaactgcaatcacaaaggcttcattttttacagtacttt
gcttgctctgagcaggcaaaagcaatctttcaaaggagcagcatgcttct
ttaaggctacaaaacagttatctttgctgtatatgatctgtttttttttt
ttaaatttactagggcaagaaaacaattaataggtccaaccttccatata
gtatttttctacttgagaattcaatgtccatccaagggaaagctcttaac
aggaaaccaatcaccagttccaatatttgggaaggagggatagcgtataa
agttttcaacatactcaaacagttctacgtgacagcatcatctcagctga
tggttgcagggttgtagaggcaccggagaagacaagcgcaaatgcagctt
ggacactatcagtgcaaaattcactggatacaccgtactataaaagatgc
atattcttttcttcattagccaagatgatggatagtttacctcttggaca
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71186436_71187088
seq2: B6Ng01-283J23.b_45_697 (reverse)

seq1  GCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTAC  50

seq1  TGGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTTCCAATGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTTCCAATGATGG  100

seq1  CCAACTAGGCTATCTTCTGCTACATATGCAGCTAGAGATACAAGCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGGCTATCTTCTGCTACATATGCAGCTAGAGATACAAGCTCTGG  150

seq1  GGGTACTGATTAGTTCATATCGTTGTTCTACCTATAGGGTTGCAGACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGATTAGTTCATATCGTTGTTCTACCTATAGGGTTGCAGACCCC  200

seq1  TTCAGCTCTTGGGTACTTTCTCTAGCTCCTATATTGGGGGCCCTGTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTTGGGTACTTTCTCTAGCTCCTATATTGGGGGCCCTGTGTTC  250

seq1  CATCCAATAGATGACTGTGAGCATCCACTGCTGTGTTTGCCAAGCACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATAGATGACTGTGAGCATCCACTGCTGTGTTTGCCAAGCACTGG  300

seq1  CAAAGTCAAGGAGAGCACTTTTGACGTGACAGGTGTTCTGCTCCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAAGGAGAGCACTTTTGACGTGACAGGTGTTCTGCTCCTTTCTC  350

seq1  TTGCTTTCCACTGCCTTTTCCCAGCTATACCACCAGCCTGTTCACCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCACTGCCTTTTCCCAGCTATACCACCAGCCTGTTCACCTCAG  400

seq1  CTCATCAGAGGACTTATTGTAGTTTATAGAGTGAAGTATTGTCTGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGAGGACTTATTGTAGTTTATAGAGTGAAGTATTGTCTGATCCT  450

seq1  AGAATCGCAAATAAAACGAGTTAATATCCAGAAACTCAACTGTTATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCAAATAAAACGAGTTAATATCCAGAAACTCAACTGTTATGAGT  500

seq1  TAATATCCAGAAACTCAACTGTTGTAACCTTTCATTTTGATATTCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAGAAACTCAACTGTTGTAACCTTTCATTTTGATATTCCCCAA  550

seq1  CAACAACAACAAAGGGAATAGCCAAAGAAAACTAAAATTCAAAAGCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAAAGGGAATAGCCAAAGAAAACTAAAATTCAAAAGCACTT  600

seq1  ATGCACAACATGGAAGAAACAGTGAGCAGCCACTTACCTATGCCTTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAACATGGAAGAAACAGTGAGCAGCCACTTACCTATGCCTTAGAA  650

seq1  TTC  653
      |||
seq2  TTC  653

seq1: chr1_71106426_71107589
seq2: B6Ng01-283J23.g_63_1215

seq1  GAATTCATAAGACAGTGGCCAGCAAATAGTACTAGCTCAGTGACTGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGACAGTGGCCAGCAAATAGTACTAGCTCAGTGACTGCTAA  50

seq1  TACTGCTAAATTTGCACCATTGAGAGACAGACAGAAAAAAGAAATAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTAAATTTGCACCATTGAGAGACAGACAGAAAAAAGAAATAAGAA  100

seq1  AACATGACAGGTTATACTTGGAGTGCAAATCATATTATAATTTCCCCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACAGGTTATACTTGGAGTGCAAATCATATTATAATTTCCCCCGC  150

seq1  TTGATGATACATTTCACACACATTCTACAATAATAGTTTGGATGCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATACATTTCACACACATTCTACAATAATAGTTTGGATGCTTAAT  200

seq1  AATGGAAAATACATTGAAGCATAATTTTTTAAAAATATTAAAATAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAATACATTGAAGCATAATTTTTTAAAAATATTAAAATAAGAAT  250

seq1  CTTCATTTCCCTATATGGTACAATCTAAACATAAAGAGTATGAGACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTCCCTATATGGTACAATCTAAACATAAAGAGTATGAGACAGGG  300

seq1  GCTGAAAATGCTTCTTAGCCAAGATTCCTTCATATCATCAAGACGGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATGCTTCTTAGCCAAGATTCCTTCATATCATCAAGACGGATGA  350

seq1  AGAAGGCGTCCTTCAGTTATTGAAGGGTTAAACTGCGGTGTTTACGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCGTCCTTCAGTTATTGAAGGGTTAAACTGCGGTGTTTACGGTCT  400

seq1  CGCTCTACCCAAGAGAGTGTTCAGACAATAAATTCCTCTAATGTCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTACCCAAGAGAGTGTTCAGACAATAAATTCCTCTAATGTCCTTTC  450

seq1  CCATACAGGAGTGACCTACCTACAGCTGTGCCCTGAATCAGCTGTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGGAGTGACCTACCTACAGCTGTGCCCTGAATCAGCTGTAACAA  500

seq1  CAAGATAAAGTAAGGAGATGCAAAAACAAAATTTTTGTTTGCATATGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAAGTAAGGAGATGCAAAAACAAAATTTTTGTTTGCATATGTAG  550

seq1  ATCATCCAACATTCAAAAACATAAACTAGGCATTTTTACTAGAACTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAACATTCAAAAACATAAACTAGGCATTTTTACTAGAACTAAAC  600

seq1  TTACAAGACATGCCCAAATGTCACGACAATGGATGAACAGGATCCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGACATGCCCAAATGTCACGACAATGGATGAACAGGATCCTTTCT  650

seq1  GAACAACTATAAAACTGCAATCACAAAGGCTTCATTTTTTACAGTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTATAAAACTGCAATCACAAAGGCTTCATTTTTTACAGTACTTT  700

seq1  GCTTGCTCTGAGCAGGCAAAAGCAATCTTTCAAAGGAGCAGCATGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTGAGCAGGCAAAAGCAATCTTTCAAAGGAGCAGCATGCTTCT  750

seq1  TTAAGGCTACAAAACAGTTATCTTTGCTGTATATGATCTG-TTTTTTTTT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAAGGCTACAAAACAGTTATCTTTGCTGTATATGATCTGTTTTTTTTTT  800

seq1  TTAAATTTACTAGGGCAAGAAAACAATTAATAGGTCCAACCTTCCATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTACTAGGGCAAGAAAACAATTAATAGGTCCAACCTTCCATATA  850

seq1  GTATTTTTCTACTTGAGAATTCAATGTCCATCCAAGGGAAAGCTCTTAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCTACTTGAGAATTCAATGTCCATCCAAGGGAAAGCTCTTAAC  900

seq1  AGGAAACCAATCACCAGTTCCAATATTTGGGAAGGAGGGATAGCGTATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAATCACCAGTTCCAATATTTGGGAAGGAGGGATAGCGTATAA  950

seq1  AGTTTTCAACATACTCCAAACAGTTCTACGGTGACAGCATCAATCTCAGC  999
      ||||||||||||||| ||||||||||||| ||||||||||| ||||||||
seq2  AGTTTTCAACATACT-CAAACAGTTCTAC-GTGACAGCATC-ATCTCAGC  997

seq1  TGAAGGGTTGCAGGGGTTGTAGGAAGGCA-CGGAGAAAGACAAGCGGCAA  1048
      || | ||||||| |||||||||  ||||| ||||| ||||||||| ||||
seq2  TG-ATGGTTGCA-GGGTTGTAG--AGGCACCGGAG-AAGACAAGC-GCAA  1041

seq1  ATGCAGCTTGGACAACTATCAGTGCAAAAATCACTGGATAACACGTACTA  1098
      ||||||||||||| ||||||||||||||| ||||||||||   |||||||
seq2  ATGCAGCTTGGAC-ACTATCAGTGCAAAATTCACTGGATACACCGTACTA  1090

seq1  TAAAAGATGCATATTCTTT--CTCATTAGCCAAGATTAAAATGAAATTAG  1146
      |||||||||||||||||||   ||||||||||||||    ||| |  |||
seq2  TAAAAGATGCATATTCTTTTCTTCATTAGCCAAGAT---GATGGA--TAG  1135

seq1  TTTTACTCTTGGACAATG  1164
      |||  |||||||||||||
seq2  TTTACCTCTTGGACAATG  1153