BAC Information

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BAC

Clone NameB6Ng01-283K23
Chromosome1 (Build37)
Map Location 60,352,387 - 60,504,800
singlet/doubletdoublet
Overlap geneNbeal1, Cyp20a1, Abi2
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneRaph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283K23.bB6Ng01-283K23.g
ACCGA082583GA082584
length1,1311,106
definitionB6Ng01-283K23.b B6Ng01-283K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,352,387 - 60,353,503)(60,503,696 - 60,504,800)
sequence
gaattcttaataggctagatgaataagatttatcacgaatgactacttaa
aaaaaaaacacccaaaaaattctgaataattggggaaagggcatgaaaac
aatcattctgagctggaaatttaggggtgctattagaaaaacttagaagt
agaactgagatgtccgtagaagaggatgaatgggaagtttgctgggggac
tagagtaagccatgacctggagttgttaacagtgcataatatgcattcta
ttgtaacacagtccaccgtgtgtgtatgagtgaatacagacatgctttca
tttaactctgaaatgttttcttaaattattttgaaggaaccacaccctcc
aagattatcagcagaagaagctattcaaaagcaaaccaaaacagaaattt
caaccctaaacctctttcaacacctcactgaactgaagtcattttttata
gaggtaataacccaacttggtaatatcagagacctttcttcaattttata
tatttcaattaacttgtgtgttatgttcatttgtacatgtgtgtgtgctt
tatccacgcctatagttttagcacttacttggtgtgtgtgaaaagccaaa
ggtcagtttccaggatctttctctgttgctctttccaccttactttttaa
tgacagagtctgactaagccaaaaccttgctgttctggctaagctggctg
gccagtgggtcccagggatcttcatctcttaccatataccttcccaccac
cagcgctgggctacaggtgtatcttgcccctctccgctttttttaaaaac
aggtgctgggggatcttaacacagtttactaactaaaccatctccccact
ccagtttattcaatttttactgaaggaaaatgttataataatgatcttta
aaactgaatttatgtatacttgtgtgtgcctgaattgagtttatggtgca
tcatacatacaaggtgctgggggaagactagacacaattatattcctgga
aactagacttaagtaggttatgaagcttgccttgagacaggtactggatt
tcaaaactaccatcttctaacagaagctttttaaccacaaagccactctc
agccagtctgggatttttcttttttaaaaga
gaattccttaataaataaggagaaactcttgagttcagtaaacttgtttt
gatacctatttataaagtctaccttataaaaaaaatttaagtaaattccc
tataaatgtaagagcaaactgttggtgcttacacatcaaaataatactac
cttttatatcctggcctgatacccatctaaagaagcttttagtaaatttt
actaaattattttatttcagtttgtaatggcatggtaatatactaatatt
ttattatgaatagtttttcatctgtaaatttccagcaaaaaataacttgc
aatttctattcctggttagtaatggtttttatattaacttaagtttatct
ctgggatgtcttttttcaccttcctggctgttcaaagttgcatcagaaca
tgaggagagagaggaagaatcagatgaggtttgggagagcagagtgagga
aaagaacttagtgcttggaaatgagagagattagctgaagttatctgaag
agatcatggtactctgaccatcgtggtttgcgctgaggtagagaaaatac
ctgtaagttcgatttctttgattcacagaagctgtcctcacagggctctg
ctgcgagggagccatattacgggttgggctaggtacgtaatcatttggta
ccactggaggacgcactggctccagtgttcgatagggggagtgccgccta
caaaaagaagagcgtatgtatggtgtgattaatcaagtctcggcacgcta
cttcagagttgccagtgacatacaatttgtaagcagaaagaggaaatgtg
gtttaacccagctatcaatttgtctttcctttcagcataaactcttctac
cagcagagagagttctggtgagtatgtagtgtaaatttccagtctccagc
ctcattcctatgctaatggaaattttgttcatttatttgcaggaaaacac
ccaagttttccattgttaggccaatgttttctagaactctattccttttc
tagaagaatttgaattactttaggatcatgttaaatctcccaatggcact
gaggaatgcactattatctcttctgctctctctctcctaaccatagaata
tttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60352387_60353503
seq2: B6Ng01-283K23.b_46_1176

seq1  GAATTCTTAATAGGCTAGATGAATAAGATTTATCACGAATGACTACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATAGGCTAGATGAATAAGATTTATCACGAATGACTACTTAA  50

seq1  AAAAAAAACACCCAAAAAATTCTGAATAATTGGGGAAAGGGCATGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACACCCAAAAAATTCTGAATAATTGGGGAAAGGGCATGAAAAC  100

seq1  AATCATTCTGAGCTGGAAATTTAGGGGTGCTATTAGAAAAACTTAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTGAGCTGGAAATTTAGGGGTGCTATTAGAAAAACTTAGAAGT  150

seq1  AGAACTGAGATGTCCGTAGAAGAGGATGAATGGGAAGTTTGCTGGGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGATGTCCGTAGAAGAGGATGAATGGGAAGTTTGCTGGGGGAC  200

seq1  TAGAGTAAGCCATGACCTGGAGTTGTTAACAGTGCATAATATGCATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAAGCCATGACCTGGAGTTGTTAACAGTGCATAATATGCATTCTA  250

seq1  TTGTAACACAGTCCACCGTGTGTGTATGAGTGAATACAGACATGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACACAGTCCACCGTGTGTGTATGAGTGAATACAGACATGCTTTCA  300

seq1  TTTAACTCTGAAATGTTTTCTTAAATTATTTTGAAGGAACCACACCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTGAAATGTTTTCTTAAATTATTTTGAAGGAACCACACCCTCC  350

seq1  AAGATTATCAGCAGAAGAAGCTATTCAAAAGCAAACCAAAACAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCAGCAGAAGAAGCTATTCAAAAGCAAACCAAAACAGAAATTT  400

seq1  CAACCCTAAACCTCTTTCAACACCTCACTGAACTGAAGTCATTTTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTAAACCTCTTTCAACACCTCACTGAACTGAAGTCATTTTTTATA  450

seq1  GAGGTAATAACCCAACTTGGTAATATCAGAGACCTTTCTTCAATTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATAACCCAACTTGGTAATATCAGAGACCTTTCTTCAATTTTATA  500

seq1  TATTTCAATTAACTTGTGTGTTATGTTCATTTGTACATGTGTGTGTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATTAACTTGTGTGTTATGTTCATTTGTACATGTGTGTGTGCTT  550

seq1  TATCCACGCCTATAGTTTTAGCACTTACTTGGTGTGTGTGAAAAGCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACGCCTATAGTTTTAGCACTTACTTGGTGTGTGTGAAAAGCCAAA  600

seq1  GGTCAGTTTCCAGGATCTTTCTCTGTTGCTCTTTCCACCTTACTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTTCCAGGATCTTTCTCTGTTGCTCTTTCCACCTTACTTTTTAA  650

seq1  TGACAGAGTCTGACTAAGCCAAAACCTTGCTGTTCTGGCTAAGCTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTCTGACTAAGCCAAAACCTTGCTGTTCTGGCTAAGCTGGCTG  700

seq1  GCCAGTGGGTCCCAGGGATCTTCATCTCTTACCATATACCTTCCCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGGTCCCAGGGATCTTCATCTCTTACCATATACCTTCCCACCAC  750

seq1  CAGCGCTGGGCTACAGGTGTATCTTGCCCCTCTCCGCTTTTTTTAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTGGGCTACAGGTGTATCTTGCCCCTCTCCGCTTTTTTTAAAAAC  800

seq1  AGGTGCT-GGGGATCTTAACACAGTTTACTAACTAAACCATCTCCCCACT  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGGGGGATCTTAACACAGTTTACTAACTAAACCATCTCCCCACT  850

seq1  CCAGTTTATTCAA-TTTTACTGAAGGAAAATGTTATAAT-ATGATCTTTA  897
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CCAGTTTATTCAATTTTTACTGAAGGAAAATGTTATAATAATGATCTTTA  900

seq1  AAACTGAA-TTATGTATACTTGTGTGTGCCTGAA-TGAGTTTAT-GTGCA  944
      |||||||| ||||||||||||||||||||||||| ||||||||| |||||
seq2  AAACTGAATTTATGTATACTTGTGTGTGCCTGAATTGAGTTTATGGTGCA  950

seq1  TCATACATAC-AGGTGCCTGGGG-AGACTAGACACAA-TATACTCCTGG-  990
      |||||||||| ||||||  |||| ||||||||||||| |||| |||||| 
seq2  TCATACATACAAGGTGCTGGGGGAAGACTAGACACAATTATATTCCTGGA  1000

seq1  AACTAGACTTAAGTA-GTTATG-AGC-TGCC-TGAGACAGGTACTGGATT  1036
      ||||||||||||||| |||||| ||| |||| ||||||||||||||||||
seq2  AACTAGACTTAAGTAGGTTATGAAGCTTGCCTTGAGACAGGTACTGGATT  1050

seq1  TCAAACCTA-CATCCTCT-ACAAGAGC-TTTTAACCACCAAGCCAACTCT  1083
      ||||| ||| |||| ||| |||  ||| |||||||||| ||||| |||||
seq2  TCAAAACTACCATCTTCTAACAGAAGCTTTTTAACCACAAAGCC-ACTCT  1099

seq1  CCAGCCCCAGTCCTGGA-TTTTCTTTTTTTAAAGA  1117
       |||  ||||||  ||| ||||||||||| |||||
seq2  -CAG--CCAGTCTGGGATTTTTCTTTTTTAAAAGA  1131

seq1: chr1_60503696_60504800
seq2: B6Ng01-283K23.g_68_1173 (reverse)

seq1  TTTAAATA-TCTATGGTTAGGGAGAGAGAGAGGAGAAGAAGATAATTAGT  49
      |||||||| |||||||||| |||||||||||| ||||| |||||| ||||
seq2  TTTAAATATTCTATGGTTA-GGAGAGAGAGAGCAGAAG-AGATAA-TAGT  47

seq1  GCATTCATCCAGTGCATTTGGGAGATTTTAACATGATCCTAAAGTAATTC  99
      |||||| | ||||||  |||||||| ||||||||||||||||||||||||
seq2  GCATTCCT-CAGTGCCATTGGGAGA-TTTAACATGATCCTAAAGTAATTC  95

seq1  AAATTCTTCTAAGAAAAGAATAGAG-TCTAGAAAACATTGGCCTAAACAA  148
      |||||||||||  ||| |||||||| |||||||||||||||||| |||||
seq2  AAATTCTTCTAGAAAAGGAATAGAGTTCTAGAAAACATTGGCCT-AACAA  144

seq1  TGGAAAACTT-GGTGTTTT-CTGCAAATAAATGAACAAAA-TTCCATTAG  195
      |||||||||| |||||||| |||||||||||||||||||| |||||||||
seq2  TGGAAAACTTGGGTGTTTTCCTGCAAATAAATGAACAAAATTTCCATTAG  194

seq1  CATAGGAATGAGGCTGGAGACT-GAAATTTACACTACATACTCACCAGAA  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATAGGAATGAGGCTGGAGACTGGAAATTTACACTACATACTCACCAGAA  244

seq1  CTCTCTCTGCTGGTAGAAGAG-TTATGCTG-AAGGAAAGACAAATTGATA  292
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTCTCTCTGCTGGTAGAAGAGTTTATGCTGAAAGGAAAGACAAATTGATA  294

seq1  GCTGGGTTAAACCACATTTCCTCTTTCTGCTTACAAATTGTATGTCACTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTAAACCACATTTCCTCTTTCTGCTTACAAATTGTATGTCACTG  344

seq1  GCAACTCTGAAGTTAGCGTGCCGAGACTTGATTAATCACACCATACATAC  392
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTGAAG-TAGCGTGCCGAGACTTGATTAATCACACCATACATAC  393

seq1  GCTCTTCTTTTTGTAGGCGGCACTCCCCCTATCGAACACTGGAGCCAGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTTTTGTAGGCGGCACTCCCCCTATCGAACACTGGAGCCAGTG  443

seq1  CGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCCCAACCCGTAATAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCCCAACCCGTAATAT  493

seq1  GGCTCCCTCGCAGCAGAGCCCTGTGAGGACAGCTTCTGTGAATCAAAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTCGCAGCAGAGCCCTGTGAGGACAGCTTCTGTGAATCAAAGAA  543

seq1  ATCGAACTTACAGGTATTTTCTCTACCTCAGCGCAAACCACGATGGTCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAACTTACAGGTATTTTCTCTACCTCAGCGCAAACCACGATGGTCAG  593

seq1  AGTACCATGATCTCTTCAGATAACTTCAGCTAATCTCTCTCATTTCCAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATGATCTCTTCAGATAACTTCAGCTAATCTCTCTCATTTCCAAG  643

seq1  CACTAAGTTCTTTTCCTCACTCTGCTCTCCCAAACCTCATCTGATTCTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTTCTTTTCCTCACTCTGCTCTCCCAAACCTCATCTGATTCTTC  693

seq1  CTCTCTCTCCTCATGTTCTGATGCAACTTTGAACAGCCAGGAAGGTGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCTCATGTTCTGATGCAACTTTGAACAGCCAGGAAGGTGAAA  743

seq1  AAAGACATCCCAGAGATAAACTTAAGTTAATATAAAAACCATTACTAACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCCCAGAGATAAACTTAAGTTAATATAAAAACCATTACTAACC  793

seq1  AGGAATAGAAATTGCAAGTTATTTTTTGCTGGAAATTTACAGATGAAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGAAATTGCAAGTTATTTTTTGCTGGAAATTTACAGATGAAAAA  843

seq1  CTATTCATAATAAAATATTAGTATATTACCATGCCATTACAAACTGAAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATAATAAAATATTAGTATATTACCATGCCATTACAAACTGAAAT  893

seq1  AAAATAATTTAGTAAAATTTACTAAAAGCTTCTTTAGATGGGTATCAGGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTAGTAAAATTTACTAAAAGCTTCTTTAGATGGGTATCAGGC  943

seq1  CAGGATATAAAAGGTAGTATTATTTTGATGTGTAAGCACCAACAGTTTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATAAAAGGTAGTATTATTTTGATGTGTAAGCACCAACAGTTTGC  993

seq1  TCTTACATTTATAGGGAATTTACTTAAATTTTTTTTATAAGGTAGACTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTTATAGGGAATTTACTTAAATTTTTTTTATAAGGTAGACTTT  1043

seq1  ATAAATAGGTATCAAAACAAGTTTACTGAACTCAAGAGTTTCTCCTTATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGGTATCAAAACAAGTTTACTGAACTCAAGAGTTTCTCCTTATT  1093

seq1  TATTAAGGAATTC  1105
      |||||||||||||
seq2  TATTAAGGAATTC  1106