BAC Information

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BAC

Clone NameB6Ng01-284F08
Chromosome1 (Build37)12 (Build37)
Map Location 19,904,178 - 19,904,5156,570,855 - 6,571,774
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284F08.bB6Ng01-284F08.g
ACCGA083062GA083063
length553929
definitionB6Ng01-284F08.b B6Ng01-284F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,904,178 - 19,904,515)(6,570,855 - 6,571,774)
sequence
tacctctgaaggagaagacccatgctttctagattggtgcgacccaccac
agtgttgagcccacaccataacttgtgttcaatattaggaatttatgtgt
ggacatattttagcaggctaagtgttgttacctttctagaaactgtatgt
caaaatccttgaattctatgatcattataggatcttgcagcagaaggcag
agtgataaaagcaggtaaaggaccctgatatagctgtctcttgtgagact
atgcaggggcctagcaaacacagaagtggatgatcacagtcagctattgg
atggatcacagggtccccaatggaggagctagagaaagtacccaatgagc
taaagggatctgcaaccctataggtggaacaacattatgaactaaccagt
acctcggagctcttgactcggagctgcatatgtaacaaaagatggcctag
tcggccatcactggaaagagaggcccattggacttgcaaactttatatgc
cccagtacaggggaacgccagggccaaaaagggggagtgggtgggtaggg
gag

gaattccagggtaggtgacctctaagttaatctgttgtcaatatctacag
acattccattaccattgcatgggttctggaaacttgctggggagatctgg
gaactgttacagaggcagtagctgaggaagtctggaaattgctgctaacc
cattgtacttgcttaagaccaggtggctgggacattctattatctgggca
tgaaggcagaagcctgggtttttgtttgtttgtttgtttgttttgttttg
ttttgtttgtttgtttgttttgttttgtttttctattagtaattgatttg
cctggccttgcttgaacttgcccagtttttagacctagtctcaactccca
atttgaagtctgtcatgaaatcagcttagccttctcaatattagagggag
aatgaaactttctttatgcatagttcctaagcagatggtcagcatttaaa
agtatcaactgtcaaaaccaaactcctgcaattccatcctcacagaatac
cccaggctcagttggtgtcagcttgcattctgtatcaccggttatgcaaa
taatgctgtattactcttcaacaagacgggaatcagatagtcgggtagta
attttgaggaatggttctgtttatacaaaggaaaatttacctctgtccct
atggtatacatatgtcattaaaggatcatgccttcttgtcaaattgagat
aatccagaaaaaaatatgtatcaatgggaagaggcatctttgtgtattta
gtcataaacttaaacaaagtgacttttagtaataaatttttcctggagtg
tgcatttgatatgtttatttcctttatcccagaacgcagaaactttcctt
ggttgagggaacagctctctgtgctttatgttcttcaaaagaagtttttc
tatcaatacctattttcctaccttataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19904178_19904515
seq2: B6Ng01-284F08.b_272_608

seq1  AAAGGACCCTGATATAGCTGTCTCTTTTGAGACTATGCCAGGGCCTAGCA  50
      |||||||||||||||||||||||||| |||||||||||  ||||||||||
seq2  AAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCAGGGGCCTAGCA  50

seq1  AACACAGAAGTGAATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCC  100
      |||||||||||| ||| |||||||||||||||||||||||||||||| ||
seq2  AACACAGAAGTGGATGATCACAGTCAGCTATTGGATGGATCACAGGGTCC  100

seq1  CCAATGGAGGAGCTAGAGAAAATACCCAAGGATTTAAGGGGGTCTGCAAC  150
      ||||||||||||||||||||| ||||||| ||  ||| ||| ||||||||
seq2  CCAATGGAGGAGCTAGAGAAAGTACCCAATGAGCTAAAGGGATCTGCAAC  150

seq1  CCTATAGGTGGAACAACAATATGAACTAACTAGTACCCCCCAGAGCTCGT  200
      |||||||||||||||||| ||||||||||| ||||  || | |||||| |
seq2  CCTATAGGTGGAACAACATTATGAACTAACCAGTA--CCTCGGAGCTCTT  198

seq1  GTCTC-TAGCTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCAGTGG  249
      | |||  ||||||||||||| |||||||||||||||| |||||||| |||
seq2  GACTCGGAGCTGCATATGTAACAAAAGATGGCCTAGTCGGCCATCACTGG  248

seq1  AAAGAGAGGGCCATTGGTCGTGCAAACTTTATATGTCTCAGTACAGGGGA  299
      ||||||||| ||||||| | ||||||||||||||| | ||||||||||||
seq2  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  298

seq1  AGGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAG  338
      | ||||||||||| ||| |||||||||||||| ||||||
seq2  ACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAG  337


seq1: chr12_6570855_6571774
seq2: B6Ng01-284F08.g_66_994

seq1  GAATTCCAGGGTAGGTGACCTCTAAGTTAATCTGTTGTCAATATCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGTGACCTCTAAGTTAATCTGTTGTCAATATCTACAG  50

seq1  ACATTCCATTACCATTGCATGGGTTCTGGAAACTTGCTGGGGAGATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATTACCATTGCATGGGTTCTGGAAACTTGCTGGGGAGATCTGG  100

seq1  GAACTGTTACAGAGGCAGTAGCTGAGGAAGTCTGGAAATTGCTGCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTACAGAGGCAGTAGCTGAGGAAGTCTGGAAATTGCTGCTAACC  150

seq1  CATTGTACTTGCTTAAGACCAGGTGGCTGGGACATTCTATTATCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTTGCTTAAGACCAGGTGGCTGGGACATTCTATTATCTGGGCA  200

seq1  TGAAGGCAGAAGCCTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGAAGCCTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTG  250

seq1  TTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTCTATTAGTAATTGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTCTATTAGTAATTGATTTG  300

seq1  CCTGGCCTTGCTTGAACTTGCCCAGTTTTTAGACCTAGTCTCAACTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTGCTTGAACTTGCCCAGTTTTTAGACCTAGTCTCAACTCCCA  350

seq1  ATTTGAAGTCTGTCATGAAATCAGCTTAGCCTTCTCAATATTAGAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTCTGTCATGAAATCAGCTTAGCCTTCTCAATATTAGAGGGAG  400

seq1  AATGAAACTTTCTTTATGCATAGTTCCTAAGCAGATGGTCAGCATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTTTCTTTATGCATAGTTCCTAAGCAGATGGTCAGCATTTAAA  450

seq1  AGTATCAACTGTCAAAACCAAACTCCTGCAATTCCATCCTCACAGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAACTGTCAAAACCAAACTCCTGCAATTCCATCCTCACAGAATAC  500

seq1  CCCAGGCTCAGTTGGTGTCAGCTTGCATTCTGTATCACCGGTTATGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCAGTTGGTGTCAGCTTGCATTCTGTATCACCGGTTATGCAAA  550

seq1  TAATGCTGTATTACTCTTCAACAAGACGGGAATCAGATAGTCGGGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTATTACTCTTCAACAAGACGGGAATCAGATAGTCGGGTAGTA  600

seq1  ATTTTGAGGAATGGTTCTGTTTATACAAAGGAAAATTTACCTCTGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGAATGGTTCTGTTTATACAAAGGAAAATTTACCTCTGTCCCT  650

seq1  ATGGTATACATATGTCATTAAAGGATCATGCCTTCTTGTCAAATTGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATACATATGTCATTAAAGGATCATGCCTTCTTGTCAAATTGAGAT  700

seq1  AATCCAGAAAAAAATATGTATCAATGGGAAGAGGCATCTTTGTGTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAAAAAAATATGTATCAATGGGAAGAGGCATCTTTGTGTATTTA  750

seq1  GTCATAAACTTAAACAAAGTGAC-TTTAGTAATAAAATTTTCCTGGAGTG  799
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  GTCATAAACTTAAACAAAGTGACTTTTAGTAATAAATTTTTCCTGGAGTG  800

seq1  TGCATTTGATATGTTTATTT-CTTTATCCCAGAACGCAGAAACTTCCCTT  848
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TGCATTTGATATGTTTATTTCCTTTATCCCAGAACGCAGAAACTTTCCTT  850

seq1  GG-TGAGGG-ACAGCTCTCTGTGCTTTATG-TCTTCAAA--GAGTTTTTC  893
      || |||||| |||||||||||||||||||| ||||||||   ||||||||
seq2  GGTTGAGGGAACAGCTCTCTGTGCTTTATGTTCTTCAAAAGAAGTTTTTC  900

seq1  TATCAATA-CTATTTT-CTACCTTATAAA  920
      |||||||| ||||||| ||||||||||||
seq2  TATCAATACCTATTTTCCTACCTTATAAA  929


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