BAC Information

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BAC

Clone NameB6Ng01-285F13
Chromosome1 (Build37)
Map Location 80,713,893 - 80,865,624
singlet/doubletdoublet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F13.bB6Ng01-285F13.g
ACCGA083820GA083821
length8481,113
definitionB6Ng01-285F13.b B6Ng01-285F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,713,893 - 80,714,739)(80,864,513 - 80,865,624)
sequence
gaattcatctatgttataaactgtaaacagaataaaagtctgtgtgaatg
acacagtattaagctctgcatgtaaaggggagttcacaatgacactgatg
taccaggaaaaatcagaagatgctcagtagccatagtgtagggccagaga
gatctctgagacatttagaagtaaattttactttgataagtactttctgt
gattcacagtgaaaagttaggagattaaactgagtaaactgagctatttt
aaaaagttagctatggtaaaactagtctaggccggcatgtgacaagccag
tgactaactcctttcagcacttgccctgctttacttctcttgcttacttt
cacatttgagtcatggcaggaatttaccacccatgtcctgaacatcccag
atgaaatttagtttgtgataatcacgggttgctcttcaaacttaaagatg
acagtcttaaaagccactgactaatgttctctcaaatcagttaggaagct
tagaaggaggctggaaatttgagcacatctgagctttgctatttaccaga
cccaggctttgaacataccctcagataaaaatcatttgaaaggtaacaat
acatgcaaagttttaaccaaagatggtggcagggattggaggtagtcata
ggataatggtcaccttctttttaaaacctaaagcttagcaactttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcctcttcttcttcctcttcttcttcctctt
cttcttcctcttcttcctcttccacttcctccttctcctccttcctcc

gaattcagcagcatgcattcagctgttctcttccaacagctgacacagtt
catccagatgcttcaagtgcctgctgccttggctttccaccatggtaggc
tggacagtgaatcatgagctaaagcaggttgttttccttagagtattttg
ctgtagcaacaaaaagtaaacaaagatatgttattgaaaagattcaatag
taagaggacccaagactatatgcatgctgctccaaaccaaagatggcttg
cttcgcattttccctgggaatcatcttagttagtgttctactgttctaaa
gagaccccatgaccaaggcatggaggtttaatctggggggttacttacag
tttaggctggttaggtcattattgtcatggagggaagcacacaagtggaa
ccatagctaagaactttatattctgctccacaggcaaagagagacagaaa
cagaaaagatagagtgaggagagaaaaacagagagacagacagacagaca
gacagacagacacagagacagacagtgaaagagacacacaaagagaaaga
gagaaactgggagtgtctaatgtgggttttttttaaacctaaaagcccag
acccagagacacatctccaacaagaccacccctttaatccttaagcagaa
cgtcaactgggacatgttgttcaaacacatgagcctacgagggacattct
cattcaaaccacaggaataaacacacatagaatgctgtataaacaaacac
acatacacacacacagagtttgtagtccgtgtttagtgatgatataaaaa
tagaacaggaaaatgaagctagtgtttgtttagacaagttgagtccactt
gaactgctgagggagaaatatactaagctgtgactttactaataattttc
tatcttgagataaccgctgggttcttacatagttagagaaaaaatacaga
gagataccataacaccaatttccttcaatgcaatattgtacagagcatat
catacccaggatattaatactgatgcagtctactgatagactgtgtgtga
tgcaatacctccacaccactttgggagcctctgtacagtggttttgtttg
gcccattattgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80713893_80714739
seq2: B6Ng01-285F13.b_44_891

seq1  GAATTCATCTATGTTATAAACTGTAAACAGAATAAAAGTCTGTGTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTATGTTATAAACTGTAAACAGAATAAAAGTCTGTGTGAATG  50

seq1  ACACAGTATTAAGCTCTGCATGTAAAGGGGAGTTCACAATGACACTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTATTAAGCTCTGCATGTAAAGGGGAGTTCACAATGACACTGATG  100

seq1  TACCAGGAAAAATCAGAAGATGCTCAGTAGCCATAGTGTAGGGCCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAAAAATCAGAAGATGCTCAGTAGCCATAGTGTAGGGCCAGAGA  150

seq1  GATCTCTGAGACATTTAGAAGTAAATTTTACTTTGATAAGTACTTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGACATTTAGAAGTAAATTTTACTTTGATAAGTACTTTCTGT  200

seq1  GATTCACAGTGAAAAGTTAGGAGATTAAACTGAGTAAACTGAGCTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAGTGAAAAGTTAGGAGATTAAACTGAGTAAACTGAGCTATTTT  250

seq1  AAAAAGTTAGCTATGGTAAAACTAGTCTAGGCCGGCATGTGACAAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAGCTATGGTAAAACTAGTCTAGGCCGGCATGTGACAAGCCAG  300

seq1  TGACTAACTCCTTTCAGCACTTGCCCTGCTTTACTTCTCTTGCTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACTCCTTTCAGCACTTGCCCTGCTTTACTTCTCTTGCTTACTTT  350

seq1  CACATTTGAGTCATGGCAGGAATTTACCACCCATGTCCTGAACATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGAGTCATGGCAGGAATTTACCACCCATGTCCTGAACATCCCAG  400

seq1  ATGAAATTTAGTTTGTGATAATCACGGGTTGCTCTTCAAACTTAAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTAGTTTGTGATAATCACGGGTTGCTCTTCAAACTTAAAGATG  450

seq1  ACAGTCTTAAAAGCCACTGACTAATGTTCTCTCAAATCAGTTAGGAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTAAAAGCCACTGACTAATGTTCTCTCAAATCAGTTAGGAAGCT  500

seq1  TAGAAGGAGGCTGGAAATTTGAGCACATCTGAGCTTTGCTATTTACCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGGCTGGAAATTTGAGCACATCTGAGCTTTGCTATTTACCAGA  550

seq1  CCCAGGCTTTGAACATACCCTCAGATAAAAATCATTTGAAAGGTAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTTGAACATACCCTCAGATAAAAATCATTTGAAAGGTAACAAT  600

seq1  ACATGCAAAGTTTTAACCAAAGATGGTGGCAGGGATTGGAGGTAGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAGTTTTAACCAAAGATGGTGGCAGGGATTGGAGGTAGTCATA  650

seq1  GGATAATGGTCACCTTCTTTTTAAAACCTAAAGCTTAGCAACTTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGGTCACCTTCTTTTTAAAACCTAAAGCTTAGCAACTTTCTTCT  700

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  750

seq1  TTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTCCTCTT  800

seq1  CTTCTTCCTCTTCTTCCTCTTCCACTTCCTCCTTCTCCTCC-TCCTCC  847
      ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCTTCCTCTTCTTCCTCTTCCACTTCCTCCTTCTCCTCCTTCCTCC  848


seq1: chr1_80864513_80865624
seq2: B6Ng01-285F13.g_67_1179 (reverse)

seq1  TACAATAAATGGCCAAAACAAAACACTGTACAGAG---CTCAAAGT-GTG  46
      ||||||||  |||||||  ||| ||||||||||||   | |||||| |||
seq2  TACAATAATGGGCCAAACAAAACCACTGTACAGAGGCTCCCAAAGTGGTG  50

seq1  T-GAGTATTTGCACCACACAACAGTCTATCAGTAGACTGCATCAGTATTA  95
      | |||   ||||| ||||| ||||||||||||||||||||||||||||||
seq2  TGGAGGTATTGCATCACAC-ACAGTCTATCAGTAGACTGCATCAGTATTA  99

seq1  ATATCCTGGTTATGATATTGCTCTGTACAATATTGCATTTGAAGGAAATT  145
      ||||||||| ||||||| ||||||||||||||||||| ||||||||||||
seq2  ATATCCTGGGTATGATA-TGCTCTGTACAATATTGCA-TTGAAGGAAATT  147

seq1  GGTGTTATTGGTATCTCTCTGTATTTTTTCTTCTAACTATGTAAGAA-CC  194
      ||||||| |||||||||||||||||||||| |||||||||||||||| ||
seq2  GGTGTTA-TGGTATCTCTCTGTATTTTTTC-TCTAACTATGTAAGAACCC  195

seq1  AGCGGTTATCTCAAGATAGAAAATTATTAGTAAAGTCACAGCTTAGTATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTTATCTCAAGATAGAAAATTATTAGTAAAGTCACAGCTTAGTATA  245

seq1  TTTCTCCCTCAGCAGTTCAAGTGGACTCAACTTGTCTAAACAAACACTAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTCAGCAGTTCAAGTGGACTCAACTTGTCTAAACAAACACTAG  295

seq1  CTTCATTTTCCTGTTCTATTTTTATATCATCACTAAACACGGACTACAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTCCTGTTCTATTTTTATATCATCACTAAACACGGACTACAAA  345

seq1  CTCTGTGTGTGTGTATGTGTGTTTGTTTATACAGCATTCTATGTGTGTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTATGTGTGTTTGTTTATACAGCATTCTATGTGTGTTT  395

seq1  ATTCCTGTGGTTTGAATGAGAATGTCCCTCGTAGGCTCATGTGTTTGAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTGGTTTGAATGAGAATGTCCCTCGTAGGCTCATGTGTTTGAAC  445

seq1  AACATGTCCCAGTTGACGTTCTGCTTAAGGATTAAAGGGGTGGTCTTGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCCCAGTTGACGTTCTGCTTAAGGATTAAAGGGGTGGTCTTGTT  495

seq1  GGAGATGTGTCTCTGGGTCTGGGCTTTTAGGTTTAAAAAAAACCCACATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTGTCTCTGGGTCTGGGCTTTTAGGTTTAAAAAAAACCCACATT  545

seq1  AGACACTCCCAGTTTCTCTCTTTCTCTTTGTGTGTCTCTTTCACTGTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCCCAGTTTCTCTCTTTCTCTTTGTGTGTCTCTTTCACTGTCTG  595

seq1  TCTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTGTTTTTCTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTGTTTTTCTCTC  645

seq1  CTCACTCTATCTTTTCTGTTTCTGTCTCTCTTTGCCTGTGGAGCAGAATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTATCTTTTCTGTTTCTGTCTCTCTTTGCCTGTGGAGCAGAATA  695

seq1  TAAAGTTCTTAGCTATGGTTCCACTTGTGTGCTTCCCTCCATGACAATAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTTAGCTATGGTTCCACTTGTGTGCTTCCCTCCATGACAATAA  745

seq1  TGACCTAACCAGCCTAAACTGTAAGTAACCCCCCAGATTAAACCTCCATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAACCAGCCTAAACTGTAAGTAACCCCCCAGATTAAACCTCCATG  795

seq1  CCTTGGTCATGGGGTCTCTTTAGAACAGTAGAACACTAACTAAGATGATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCATGGGGTCTCTTTAGAACAGTAGAACACTAACTAAGATGATT  845

seq1  CCCAGGGAAAATGCGAAGCAAGCCATCTTTGGTTTGGAGCAGCATGCATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAAATGCGAAGCAAGCCATCTTTGGTTTGGAGCAGCATGCATA  895

seq1  TAGTCTTGGGTCCTCTTACTATTGAATCTTTTCAATAACATATCTTTGTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGGGTCCTCTTACTATTGAATCTTTTCAATAACATATCTTTGTT  945

seq1  TACTTTTTGTTGCTACAGCAAAATACTCTAAGGAAAACAACCTGCTTTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGTTGCTACAGCAAAATACTCTAAGGAAAACAACCTGCTTTAG  995

seq1  CTCATGATTCACTGTCCAGCCTACCATGGTGGAAAGCCAAGGCAGCAGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATTCACTGTCCAGCCTACCATGGTGGAAAGCCAAGGCAGCAGGC  1045

seq1  ACTTGAAGCATCTGGATGAACTGTGTCAGCTGTTGGAAGAGAACAGCTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGCATCTGGATGAACTGTGTCAGCTGTTGGAAGAGAACAGCTGA  1095

seq1  ATGCATGCTGCTGAATTC  1112
      ||||||||||||||||||
seq2  ATGCATGCTGCTGAATTC  1113


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