BAC Information

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BAC

Clone NameB6Ng01-287G19
Chromosome1 (Build37)
Map Location 72,537,306 - 72,748,312
singlet/doubletdoublet
Overlap geneMarch4, Smarcal1, Ankar
Upstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5
Downstream geneRpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287G19.bB6Ng01-287G19.g
ACCGA085355GA085356
length1,1371,113
definitionB6Ng01-287G19.b B6Ng01-287G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,747,160 - 72,748,312)(72,537,306 - 72,538,434)
sequence
gaattctttcatatgttttagtgagtgactatgtttaaccataatgttaa
caaattatttcttttattatatttagtatattttaatatatactataata
caatatcattttatttcttccctgagcctttttcattaaattttacatac
atatatgtatctttgtatatattcttaaatacatttgcttgtgttgtttt
tactaacttgtcagaagaatctttattttcatgccatgtgaaatgtttat
gataaaaatctttagtcatcttaaaaacgaaaaattaagaagtgtcagcc
acctgttcctgccagcagagagctctaccagatgatgccttgagaccctt
ccagctgtgctgtgctgaggcgcctcaggttgttgatggactggctcatc
ctgctaaaataaccctgggacctctggatccagaggacatttagtagtta
gaagttaaatgtctccaagttaagaaaagagcaaggtcaaaagaaacata
atcagtaaggggagcctggcttgtttttatcaaactttaaacaacaaaac
ccagaagagtgacttcagcaattgtttgcctgggtagctcttattttccc
accctattttaaaagtcactccacaggcatctggatggatgttctttttg
gtactgtcaacatcttacacctcattggcaagcacgtgggattttgccgt
tttcccgctatctgtggtctcatcctccagcatgctgtgtgcctctttaa
ttgatgttcagtacatgtatgttgcataataggattccagacaggccgca
gtctagcactggcccatgccacttcaagatttctgttgtttcctttataa
gcaaatgcacagtagtggatagagtgtggggctgagttgagatctagaga
gagaggttagagcatttgttctcatggggtcacctctggactgtggccat
cgggcacattctcggcctaagtgcacctgcatgttggagccctaggacag
ctttagcgctcagggtttcccaggagttcaaacaacttagccctcagcta
aagcttcccagcttccctggccatttcctgcctcagttctggttgaagcg
ggctctttgagcgtcagtgtgaggcggctttcttgag
gaattctcagccgagagtgccagctggctttctaggaacagtgtttgtgg
ttataaaaggaaacatctttgaagggaaggtggccactctcctgggccaa
gagtcttagttggggaggaaaagagaataagggaggagacatgcctccaa
atcaatacacaaagctaaggatggtgcttgaggcagaaattctccaaggc
tcagcatgccttgccccaccccaggaactcccatgctgcagatctgggac
attgcacaaaaagtgcatttacatgaaaagcgcagtgtggcctgaaggca
agtggtctgggtgccctgctctcagaaacccaccctaaaggctgagaatg
ggcgtgtttaagaacccaattcctggacatatcagaggaacctaagtaga
gggtcagagatgggttgcctggagggacagagaagggacagagaacttct
gaagcacggggcagctaggaagggcttccgggtccaagcagtacaagcct
gctgtgggtgtctccctgtagccctcagctttctcattgctgtgctgaaa
tatctgaggagcaggtcgtttgtaaagaagagagattcgtttgggttcag
aattctggaggcgaaagttggaggagccatatttgctgatggcctccttt
ctggcagagtcccaaggtgacacagggaatcttgaagtgacaggaagccc
cccttacccctgatttaaagtcactaggattcaatctcaggcgttctgtc
caatttgcctaatccaaactgaatgcatttcccaaggctcccgtctctac
acatcagattaagcctcacaacaaagatcaaactccagcatgagtaggat
aaaccgcacttaagatgaatcacattctccattctttaagccacagtctc
caatttgtattcttttagaagattgtgccctctgatgatattgattattt
agctggccaactaccttacagaagataaatggtttacagcgtatttctct
ctctcctctctctctctctctctgggtagggggggggaatcgcatgccat
ttatatgttggtatggcacatgctcataataggggtgtgtagagaacaga
gttgataatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72747160_72748312
seq2: B6Ng01-287G19.b_45_1181 (reverse)

seq1  CTCAGGAAAGCCCCGCCTCACAACTGACGCTCAAAGAAGCCCCGCCTC-A  49
      |||| |||||  ||||||||| |||||||||||||||   ||||| || |
seq2  CTCAAGAAAG--CCGCCTCAC-ACTGACGCTCAAAGA--GCCCGCTTCAA  45

seq1  CCAGAACTGAAGCGCAGGAGATGCTCAGGGAAGCTGGGAAGGCCTTTAGC  99
      ||||||||||   |||||| |||  ||||||||||||||||  |||||||
seq2  CCAGAACTGA--GGCAGGAAATGGCCAGGGAAGCTGGGAAG--CTTTAGC  91

seq1  TGAGGGCTAAAGTTGGTTTGAACTCCTGGGAAACCCCTGAGCCGGCTAAA  149
      |||||||| ||||| |||||||||||||||||| ||||||||  ||||||
seq2  TGAGGGCT-AAGTT-GTTTGAACTCCTGGGAAA-CCCTGAGC--GCTAAA  136

seq1  GCTGTCCTAGGGCCTCCCACATGCAGGTTGCACCTTAGGCCGAGAATGTG  199
      |||||||||||| |||| ||||||||| |||| |||||||||||||||||
seq2  GCTGTCCTAGGG-CTCCAACATGCAGG-TGCA-CTTAGGCCGAGAATGTG  183

seq1  CCCGATGGCCACAGTCCAGAGGTTGACCCCATGAGAACAAATGCTCTAAC  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCGATGGCCACAGTCCAGAGG-TGACCCCATGAGAACAAATGCTCTAAC  232

seq1  CTCTCTCTCTAGATCTCAACTCAGCCCCACACTCTATCCACTACTGTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTAGATCTCAACTCAGCCCCACACTCTATCCACTACTGTGCA  282

seq1  TTTGCTTATAAAGGAAACAACAGAAATCTTGAAGTGGCATGGGCCAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATAAAGGAAACAACAGAAATCTTGAAGTGGCATGGGCCAGTGC  332

seq1  TAGACTGCGGCCTGTCTGGAATCCTATTATGCAACATACATGTACTGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCGGCCTGTCTGGAATCCTATTATGCAACATACATGTACTGAAC  382

seq1  ATCAATT-AAGAGGCACACAGCATGCTGGAGGATGAGACCACAGATAGCG  448
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAAAGAGGCACACAGCATGCTGGAGGATGAGACCACAGATAGCG  432

seq1  GGAAAACGGCAAAATCCCACGTGCTTGCCAATGAGGTGTAAGATGTTGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACGGCAAAATCCCACGTGCTTGCCAATGAGGTGTAAGATGTTGAC  482

seq1  AGTACCAAAAAGAACATCCATCCAGATGCCTGTGGAGTGACTTTTAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAAAAGAACATCCATCCAGATGCCTGTGGAGTGACTTTTAAAAT  532

seq1  AGGGTGGGAAAATAAGAGCTACCCAGGCAAACAATTGCTGAAGTCACTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAAAATAAGAGCTACCCAGGCAAACAATTGCTGAAGTCACTCT  582

seq1  TCTGGGTTTTGTTGTTTAAAGTTTGATAAAAACAAGCCAGGCTCCCCTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTTGTTGTTTAAAGTTTGATAAAAACAAGCCAGGCTCCCCTTA  632

seq1  CTGATTATGTTTCTTTTGACCTTGCTCTTTTCTTAACTTGGAGACATTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATGTTTCTTTTGACCTTGCTCTTTTCTTAACTTGGAGACATTTA  682

seq1  ACTTCTAACTACTAAATGTCCTCTGGATCCAGAGGTCCCAGGGTTATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAACTACTAAATGTCCTCTGGATCCAGAGGTCCCAGGGTTATTTT  732

seq1  AGCAGGATGAGCCAGTCCATCAACAACCTGAGGCGCCTCAGCACAGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATGAGCCAGTCCATCAACAACCTGAGGCGCCTCAGCACAGCACA  782

seq1  GCTGGAAGGGTCTCAAGGCATCATCTGGTAGAGCTCTCTGCTGGCAGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGGGTCTCAAGGCATCATCTGGTAGAGCTCTCTGCTGGCAGGAA  832

seq1  CAGGTGGCTGACACTTCTTAATTTTTCGTTTTTAAGATGACTAAAGATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCTGACACTTCTTAATTTTTCGTTTTTAAGATGACTAAAGATTT  882

seq1  TTATCATAAACATTTCACATGGCATGAAAATAAAGATTCTTCTGACAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAAACATTTCACATGGCATGAAAATAAAGATTCTTCTGACAAGT  932

seq1  TAGTAAAAACAACACAAGCAAATGTATTTAAGAATATATACAAAGATACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAACAACACAAGCAAATGTATTTAAGAATATATACAAAGATACA  982

seq1  TATATGTATGTAAAATTTAATGAAAAAGGCTCAGGGAAGAAATAAAATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTAAAATTTAATGAAAAAGGCTCAGGGAAGAAATAAAATGA  1032

seq1  TATTGTATTATAGTATATATTAAAATATACTAAATATAATAAAAGAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTATAGTATATATTAAAATATACTAAATATAATAAAAGAAATA  1082

seq1  ATTTGTTAACATTATGGTTAAACATAGTCACTCACTAAAACATATGAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAACATTATGGTTAAACATAGTCACTCACTAAAACATATGAAAG  1132

seq1  AATTC  1153
      |||||
seq2  AATTC  1137

seq1: chr1_72537306_72538434
seq2: B6Ng01-287G19.g_71_1183

seq1  GAATTCTCAGCCGAGAGTGCCAGCTGGCTTTCTAGGAACAGTGTTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCGAGAGTGCCAGCTGGCTTTCTAGGAACAGTGTTTGTGG  50

seq1  TTATAAAAGGAAACATCTTTGAAGGGAAGGTGGCCACTCTCCTGGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGGAAACATCTTTGAAGGGAAGGTGGCCACTCTCCTGGGCCAA  100

seq1  GAGTCTTAGTTGGGGAGGAAAAGAGAATAAGGGAGGAGACATGCCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAGTTGGGGAGGAAAAGAGAATAAGGGAGGAGACATGCCTCCAA  150

seq1  ATCAATACACAAAGCTAAGGATGGTGCTTGAGGCAGAAATTCTCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACACAAAGCTAAGGATGGTGCTTGAGGCAGAAATTCTCCAAGGC  200

seq1  TCAGCATGCCTTGCCCCACCCCAGGAACTCCCATGCTGCAGATCTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGCCTTGCCCCACCCCAGGAACTCCCATGCTGCAGATCTGGGAC  250

seq1  ATTGCACAAAAAGTGCATTTACATGAAAAGCGCAGTGTGGCCTGAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAAAAAGTGCATTTACATGAAAAGCGCAGTGTGGCCTGAAGGCA  300

seq1  AGTGGTCTGGGTGCCCTGCTCTCAGAAACCCACCCTAAAGGCTGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTGGGTGCCCTGCTCTCAGAAACCCACCCTAAAGGCTGAGAATG  350

seq1  GGCGTGTTTAAGAACCCAATTCCTGGACATATCAGAGGAACCTAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTTTAAGAACCCAATTCCTGGACATATCAGAGGAACCTAAGTAGA  400

seq1  GGGTCAGAGATGGGTTGCCTGGAGGGACAGAGAAGGGACAGAGAACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAGATGGGTTGCCTGGAGGGACAGAGAAGGGACAGAGAACTTCT  450

seq1  GAAGCACGGGGCAGCTAGGAAGGGCTTCCGGGTCCAAGCAGTACAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGGGGCAGCTAGGAAGGGCTTCCGGGTCCAAGCAGTACAAGCCT  500

seq1  GCTGTGGGTGTCTCCCTGTAGCCCTCAGCTTTCTCATTGCTGTGCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTGTCTCCCTGTAGCCCTCAGCTTTCTCATTGCTGTGCTGAAA  550

seq1  TATCTGAGGAGCAGGTCGTTTGTAAAGAAGAGAGATTCGTTTGGGTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGGAGCAGGTCGTTTGTAAAGAAGAGAGATTCGTTTGGGTTCAG  600

seq1  AATTCTGGAGGCGAAAGTTGGAGGAGCCATATTTGCTGATGGCCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGAGGCGAAAGTTGGAGGAGCCATATTTGCTGATGGCCTCCTTT  650

seq1  CTGGCAGAGTCCCAAGGTGACACAGGGAATCTTGAAGTGACAGGAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGTCCCAAGGTGACACAGGGAATCTTGAAGTGACAGGAAGCCC  700

seq1  CCCTTACCCCTGATTTAAAGTCACTAGGATTCAATCTCAGGCGTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCCCTGATTTAAAGTCACTAGGATTCAATCTCAGGCGTTCTGTC  750

seq1  CAATTTGCCTAATCCAAACTGAATGCATTTCCCAAGGCTCCCGTCTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCCTAATCCAAACTGAATGCATTTCCCAAGGCTCCCGTCTCTAC  800

seq1  ACATCAGATTAAGCCTCACAACAAAGATCAAACTCCAGCATGAGTAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGATTAAGCCTCACAACAAAGATCAAACTCCAGCATGAGTAGGAT  850

seq1  AAACCGCACTTAAGATGAATCACATTCTCCATTCTTTAAGCCACAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGCACTTAAGATGAATCACATTCTCCATTCTTTAAGCCACAGTCTC  900

seq1  CAATTTGTATTCTTTTAGAAGA-TGTGCCCTCTGATGATATTGATATTTT  949
      |||||||||||||||||||||| ||||||||||||||||||||||  |||
seq2  CAATTTGTATTCTTTTAGAAGATTGTGCCCTCTGATGATATTGATTATTT  950

seq1  AGCTGGCCAACTACCTTACAGAAGATTAAATGTTTAACAGTGTTATTTTC  999
      ||||||||||||||||||||||||| |||||| || |||| ||   ||||
seq2  AGCTGGCCAACTACCTTACAGAAGA-TAAATGGTTTACAGCGT--ATTTC  997

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTATGTGTGTGTGTGTATT  1049
      |||||||| ||||||||||||||||||| ||      | | | | | || 
seq2  TCTCTCTC-CTCTCTCTCTCTCTCTCTGGGT-----AGGGGGGGGGAAT-  1040

seq1  TCTGCATGCGATTTATATGTTTGTGTATTGGGCACATGCTCATAAATATG  1099
         |||||| ||||||||||| || |    ||||||||||||| |||| |
seq2  --CGCATGCCATTTATATGTTGGTAT----GGCACATGCTCAT-AATAGG  1083

seq1  TGTGTGTAGAGACCAGAAGTTGAT-ATCTAA  1129
       ||||||||||| ||| ||||||| ||||||
seq2  GGTGTGTAGAGAACAG-AGTTGATAATCTAA  1113