BAC Information

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BAC

Clone NameB6Ng01-287O21
Chromosome1 (Build37)
Map Location 132,350,979 - 132,524,245
singlet/doubletdoublet
Overlap geneCd55, Zp3r
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2
Downstream geneC4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287O21.bB6Ng01-287O21.g
ACCGA085724GA085725
length449821
definitionB6Ng01-287O21.b B6Ng01-287O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,350,979 - 132,351,433)(132,523,438 - 132,524,245)
sequence
tcagctctgcctgcaccacggctgcctggatgctgtcatgttcctgcctt
aatgatactgaactgaacctctgaacctgcaagccagtcccaatttaatg
tagtccttctaagagttgccttggccttggtgtctgttcacagcagtaaa
acaccaagcctgtatacagaccatccttgaatgggctcttcattcctcct
ggggatttctcctctgcaatcacagccatgctagagaccagtgcccctac
accagggctgcaccctggataagaattcactgtccatcatctgtgaagag
ctatacttctgacgactcagttttctttaaggggccggccactgagactt
gaccattctccagtggatataggaacacgcaatggacttggtgggtgtcc
tgtcttttgggtttttgttttttgttttttggggatttgggggtttgtt
gaattcagtgaaatacaaaacttcacagaactggacgctttaagtagaga
agttatcctcaatcttcacacacaggagggaatgaccaaataagagtgtt
atcagttgaacccagtggtctgtgtgcaatttacagatccatctctgggg
gcacagtgtctgctgtgatcccaacacttcagctgtggcctcagtggggg
gcttcggtaaacaagggatgtgaaatgatgtctctactgctaatcagatg
tgactggcatccttctactgtgaggacttaaaccagctgcttcagaaaag
gcaggaatcttcacactgcccgactccatccattgcctccttatagaggc
ccccttcttacagatgtgcctacctttaagacaggtgaaagctctcatca
tgtgacccaagcaacctcacaccgacattctccaactttagtttccctag
tgggagaattatgaaatagtcttttaaaacacatgcttagttattgattt
tgtgtgtgtgctcggggtgggggtgggggagcatgtgctgccatgaaatg
gaggccagaggataacttctgggagtcagttctctccttccatcttatgg
gttcaaaagaatcatctccagggaatcaggcctggcagcaagtaccattt
atcttctgagaatcttagcagcattttcttgttgttgtttaaaattataa
gtaacatttttcatacaatatattccaaatcacaattttcacctccctca
tcttctcccagatatcctaacctccccaccaatctggcctctggagcctt
ttccctcttttctttaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132350979_132351433
seq2: B6Ng01-287O21.b_48_502

seq1  GAATTCTCAGCTCTGCCTGCACCACGGCTGCCTGGATGCTGTCATGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCTGCCTGCACCACGGCTGCCTGGATGCTGTCATGTTCC  50

seq1  TGCCTTAATGATACTGAACTGAACCTCTGAACCTGCAAGCCAGTCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAATGATACTGAACTGAACCTCTGAACCTGCAAGCCAGTCCCAAT  100

seq1  TTAATGTAGTCCTTCTAAGAGTTGCCTTGGCCTTGGTGTCTGTTCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGTCCTTCTAAGAGTTGCCTTGGCCTTGGTGTCTGTTCACAGC  150

seq1  AGTAAAACACCAAGCCTGTATACAGACCATCCTTGAATGGGCTCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACACCAAGCCTGTATACAGACCATCCTTGAATGGGCTCTTCATT  200

seq1  CCTCCTGGGGATTTCTCCTCTGCAATCACAGCCATGCTAGAGACCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGGATTTCTCCTCTGCAATCACAGCCATGCTAGAGACCAGTGC  250

seq1  CCCTACACCAGGGCTGCACCCTGGATAAGAATTCACTGTCCATCATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACACCAGGGCTGCACCCTGGATAAGAATTCACTGTCCATCATCTGT  300

seq1  GAAGAGCTATACTTCTGACGACTCAGTTTTCTTTAAGGGGCCGGCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTATACTTCTGACGACTCAGTTTTCTTTAAGGGGCCGGCCACTG  350

seq1  AGACTTGACCATTCTCCAGTGGATATAGGAACACGCAATGGACTTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACCATTCTCCAGTGGATATAGGAACACGCAATGGACTTGGTGG  400

seq1  GTGTCCTGTCTTTTGGGTTTTTGTTTTTTGTTTTTTGGGGATTTGGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGTCTTTTGGGTTTTTGTTTTTTGTTTTTTGGGGATTTGGGGGT  450

seq1  TTGTT  455
      |||||
seq2  TTGTT  455

seq1: chr1_132523438_132524245
seq2: B6Ng01-287O21.g_67_887 (reverse)

seq1  TTTTTTAAAG-AAAGAGAGAAAAGGCT-CAGA-GACAGATTGGTGGGGAG  47
      |||||||||| |||||| ||||||||| |||| | |||||||||||||||
seq2  TTTTTTAAAGAAAAGAGGGAAAAGGCTCCAGAGGCCAGATTGGTGGGGAG  50

seq1  GT--AGATATCTGGGAGAAGATGA-GGAGGTG-AAATTGTGA-TTAGAAT  92
      ||   ||||||||||||||||||| ||||||| ||||||||| || ||||
seq2  GTTAGGATATCTGGGAGAAGATGAGGGAGGTGAAAATTGTGATTTGGAAT  100

seq1  ATATTGTATGAAAAATGTTACTTTTAA-TTTAAACAACAACA--GAAATG  139
      ||||||||||||||||||||||| ||| ||||||||||||||   |||||
seq2  ATATTGTATGAAAAATGTTACTTATAATTTTAAACAACAACAAGAAAATG  150

seq1  CTGCTAAGATTCTCAGAAGAT-AATGGTACTTGCTGCCAGGCCTGATTCC  188
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGCTAAGATTCTCAGAAGATAAATGGTACTTGCTGCCAGGCCTGATTCC  200

seq1  CTGGAGTTGATTC-TTTGAACCCATAAGATGGAAGGAGAGAACTGACTCC  237
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATGATTCTTTTGAACCCATAAGATGGAAGGAGAGAACTGACTCC  250

seq1  CAGAAGTTATCCTCTGGCCTCCATTTCATGGCAGCACATGCTCCCCCACC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTATCCTCTGGCCTCCATTTCATGGCAGCACATGCTCCCCCACC  300

seq1  CCCACCCCGAGCACACACACAAAATCAATAACTAAGCATGTGTTTTAAAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCGAGCACACACACAAAATCAATAACTAAGCATGTGTTTTAAAA  350

seq1  GACTATTTCATAATTCTCCCACTAGGGAAACTAAAGTTGGAGAATGTCGG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTCATAATTCTCCCACTAGGGAAACTAAAGTTGGAGAATGTCGG  400

seq1  TGTGAGGTTGCTTGGGTCACATGATGAGAGCTTTCACCTGTCTTAAAGGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTTGCTTGGGTCACATGATGAGAGCTTTCACCTGTCTTAAAGGT  450

seq1  AGGCACATCTGTAAGAAGGGGGCCTCTATAAGGAGGCAATGGATGGAGTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATCTGTAAGAAGGGGGCCTCTATAAGGAGGCAATGGATGGAGTC  500

seq1  GGGCAGTGTGAAGATTCCTGCCTTTTCTGAAGCAGCTGGTTTAAGTCCTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGTGAAGATTCCTGCCTTTTCTGAAGCAGCTGGTTTAAGTCCTC  550

seq1  ACAGTAGAAGGATGCCAGTCACATCTGATTAGCAGTAGAGACATCATTTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAAGGATGCCAGTCACATCTGATTAGCAGTAGAGACATCATTTC  600

seq1  ACATCCCTTGTTTACCGAAGCCCCCCACTGAGGCCACAGCTGAAGTGTTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTTGTTTACCGAAGCCCCCCACTGAGGCCACAGCTGAAGTGTTG  650

seq1  GGATCACAGCAGACACTGTGCCCCCAGAGATGGATCTGTAAATTGCACAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAGCAGACACTGTGCCCCCAGAGATGGATCTGTAAATTGCACAC  700

seq1  AGACCACTGGGTTCAACTGATAACACTCTTATTTGGTCATTCCCTCCTGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTGGGTTCAACTGATAACACTCTTATTTGGTCATTCCCTCCTGT  750

seq1  GTGTGAAGATTGAGGATAACTTCTCTACTTAAAGCGTCCAGTTCTGTGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGATTGAGGATAACTTCTCTACTTAAAGCGTCCAGTTCTGTGAA  800

seq1  GTTTTGTATTTCACTGAATTC  808
      |||||||||||||||||||||
seq2  GTTTTGTATTTCACTGAATTC  821