BAC Information

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BAC

Clone NameB6Ng01-288E08
Chromosome1 (Build37)
Map Location 96,722,989 - 96,724,124
singlet/doubletsinglet
Overlap genenone
Upstream geneD2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E08.bB6Ng01-288E08.g
ACCGA085979GA085980
length1,142928
definitionB6Ng01-288E08.b B6Ng01-288E08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gggaattccagctttcttcaatcccacagtagctgccagaacatctatcc
attaagtctcacaaccaagtgtactgcccacaggaatgcaatgcaggaat
ttactgagcctttgatcctcaatcatttcaacctcttgccagtcttcctc
acacttcattatttttgtttcagcctctctctttggtatcctgggctttt
tgggtatgacttacatggaacatttcaccattattgctccctctgagata
accctgaaagatattttcacctcaattttccctaaattgtcattaaacta
gaaaccatggaacagaagtatattttatttcatcttggagtgtcaataat
aaactcatattttgtaagaaaatcataatgccaccatgacctatttctac
ttgtcattgtacaaccttcacatcaatggtggcaaaatcttaataaaaaa
ttctacaattaagcaaattttaataatttcaattttgtaagcctgaaaaa
agtgaaattattgaatttgccacttaaccatttttacagagcatatttga
agcgattatgtatcagtttctctatatttataatttcatgaaatacaacc
taaaacagcatatacttgttagaagaaatactcactaaatttatgccaga
aactttgacaaaaccaaaaattccacaagttcattgtaagttgggtggat
agtatataggaatgcaaagtccttcagaagtgaccaaactgtttgaggaa
cttaaaagactaaacacagcaattttattttgcttctaaattttttgata
aacagctttgtgatattgccacaaataaaagtgaaatatgtccaataaat
gtacatactcttgcaaagtttattttttaagtatgtaaattattttctgg
attgttatgttgacttattcattgagctgtttattactaaacacacaata
aagaacacacatactattgttaaataacacattttaagattataaaaata
tattaacatagttcatttttgtacaattgatattcttaaatagaaacatg
ggccaaatttgttatttctaatagtggaacttaaggaaaatttgtagaaa
acaaatttggtagtcaaccacaattacatttgaagtgtttga

gaattcacttctgcctgttgtagtgaaaactgggtgaactttcttaagaa
ataaatcataaaaatgtgtgaggaaatgaagaacacagatcagaatttaa
atttttgagacatagttaaaatataaaatttataaacgaacctactgagc
ctataagccaggatgtaagttttaacttttctaggttctcattctaaaat
actgacgttaaaacattcacaaatgtgtttagatatgacaccatcactag
tgttttataaagaataactaatgagcctgaatacctgtttttgatgctac
tatttttcttatcgctgtgagaaaatacctgacaaaagcagcctagagaa
tgtaggacttatttcttgtcacagtataagtttattttctgtcgtgtaac
aggtccatcatggtggtaagagtggctttagctgtggtctcattgcaacc
atagtcaggaaacaaaagtgaatgcctgtgctcagatcactgttcttcct
attcatttgcaaattctagtctgtgggatctttgcttccacattcaagat
gcatttttacactttagttaaacctcttcagcagaacctgtcctgacaag
tttttcttctaggcattttaagacttaagttggctatcaagctaaagaac
aagcaaccagaccccccagagctcccagggacaaagccactaaccaaaga
gtacacatgaagggactacatgctccatatgcagcatcaatgggaggaga
ggcccttggtcctgtgaaggctcaatgccccagtgtaggggaatctcaga
aggtgaggtgggagtgggtagggaagcaccctcatagatgcaggggagca
gaatgggagtttgagagaggggttcaataggatcaggactttgtacaaat
tactcatataacttatgtaaaacaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96722989_96724124
seq2: B6Ng01-288E08.b_48_1189

seq1  GGGAATTCCAGCTTTCTTCAATCCCACAGTAGCTGCCAGAACATCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCCAGCTTTCTTCAATCCCACAGTAGCTGCCAGAACATCTATCC  50

seq1  ATTAAGTCTCACAACCAAGTGTACTGCCCACAGGAATGCAATGCAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTCACAACCAAGTGTACTGCCCACAGGAATGCAATGCAGGAAT  100

seq1  TTACTGAGCCTTTGATCCTCAATCATTTCAACCTCTTGCCAGTCTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGCCTTTGATCCTCAATCATTTCAACCTCTTGCCAGTCTTCCTC  150

seq1  ACACTTCATTATTTTTGTTTCAGCCTCTCTCTTTGGTATCCTGGGCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCATTATTTTTGTTTCAGCCTCTCTCTTTGGTATCCTGGGCTTTT  200

seq1  TGGGTATGACTTACATGGAACATTTCACCATTATTGCTCCCTCTGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGACTTACATGGAACATTTCACCATTATTGCTCCCTCTGAGATA  250

seq1  ACCCTGAAAGATATTTTCACCTCAATTTTCCCTAAATTGTCATTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAAGATATTTTCACCTCAATTTTCCCTAAATTGTCATTAAACTA  300

seq1  GAAACCATGGAACAGAAGTATATTTTATTTCATCTTGGAGTGTCAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATGGAACAGAAGTATATTTTATTTCATCTTGGAGTGTCAATAAT  350

seq1  AAACTCATATTTTGTAAGAAAATCATAATGCCACCATGACCTATTTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATATTTTGTAAGAAAATCATAATGCCACCATGACCTATTTCTAC  400

seq1  TTGTCATTGTACAACCTTCACATCAATGGTGGCAAAATCTTAATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGTACAACCTTCACATCAATGGTGGCAAAATCTTAATAAAAAA  450

seq1  TTCTACAATTAAGCAAATTTTAATAATTTCAATTTTGTAAGCCTGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAATTAAGCAAATTTTAATAATTTCAATTTTGTAAGCCTGAAAAA  500

seq1  AGTGAAATTATTGAATTTGCCACTTAACCATTTTTACAGAGCATATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTATTGAATTTGCCACTTAACCATTTTTACAGAGCATATTTGA  550

seq1  AGCGATTATGTATCAGTTTCTCTATATTTATAATTTCATGAAATACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTATGTATCAGTTTCTCTATATTTATAATTTCATGAAATACAACC  600

seq1  TAAAACAGCATATACTTGTTAGAAGAAATACTCACTAAATTTATGCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCATATACTTGTTAGAAGAAATACTCACTAAATTTATGCCAGA  650

seq1  AACTTTGACAAAACCAAAAATTCCACAAGTTCATTGTAAGTTGGGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGACAAAACCAAAAATTCCACAAGTTCATTGTAAGTTGGGTGGAT  700

seq1  AGTATATAGGAATGCAAAGTCCTTCAGAAGTGACCAAACTGTTTGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAGGAATGCAAAGTCCTTCAGAAGTGACCAAACTGTTTGAGGAA  750

seq1  CTTAAAAGACTAAACACAGCAATTTTATTTTGCTTCTAAATTTTTTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGACTAAACACAGCAATTTTATTTTGCTTCTAAATTTTTTGATA  800

seq1  AACAGCTTTGTGATATTGCCACAAATAAAAGTGAAATATGTCCAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTTGTGATATTGCCACAAATAAAAGTGAAATATGTCCAATAAAT  850

seq1  GTACATACTCTTGCAAAG-TTATTTTTTAAGTATGTAAATTATTTTCTGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTACATACTCTTGCAAAGTTTATTTTTTAAGTATGTAAATTATTTTCTGG  900

seq1  ATTGTTATGTTGACTTATTCATTGAGCTGTTTATTACTAAACACACAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATGTTGACTTATTCATTGAGCTGTTTATTACTAAACACACAATA  950

seq1  AAGAACACACATACTAT--GTAAATAACAACATTTTAAGA-TATAAAAAT  996
      |||||||||||||||||   |||||||| ||||||||||| |||||||||
seq2  AAGAACACACATACTATTGTTAAATAAC-ACATTTTAAGATTATAAAAAT  999

seq1  ATATTAACATAGTTCA-TTTTGTACAATTGATATTCTTAAATAGAAACAT  1045
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATTAACATAGTTCATTTTTGTACAATTGATATTCTTAAATAGAAACAT  1049

seq1  -GGCCAAATTTGTTATTTCTAATAGTGGAAACTAAAGAAAATTTGTAGAA  1094
       |||||||||||||||||||||||||||||  ||| ||||||||||||||
seq2  GGGCCAAATTTGTTATTTCTAATAGTGGAACTTAAGGAAAATTTGTAGAA  1099

seq1  AACAAATTTGGTAGTCAA-CACAA-TACATTTGAAAATGTTTGA  1136
      |||||||||||||||||| ||||| |||||||| || |||||||
seq2  AACAAATTTGGTAGTCAACCACAATTACATTTG-AAGTGTTTGA  1142


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