BAC Information

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BAC

Clone NameB6Ng01-288L08
Chromosome1 (Build37)
Map Location 122,176,782 - 122,344,717
singlet/doubletdoublet
Overlap geneC1ql2
Upstream geneLOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3
Downstream geneMarco, En1, AI848258, Insig2, Ccdc93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288L08.bB6Ng01-288L08.g
ACCGA086302GA086303
length7971,175
definitionB6Ng01-288L08.b B6Ng01-288L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,343,923 - 122,344,717)(122,176,782 - 122,177,930)
sequence
gaattccatctggagaaagtgggagctatgaaagtgacctctagccatga
ccctagtagaccagtgctctttttgaacccctaacctttcctatgactct
gtgccccttccacacttgagagtgtcttcctcttctctgataaaggatct
cagggctgggatggaggcttggttaaaagcacttgttggtcttgcagagc
accagcattcagttcccatcatctacatctgggggcccaaacctgcctct
gactcgtgctccagagggatctgatgccctcttctggcctctatgggcgc
ccacacacatgtctgaatatacacttgtagacacatacttaacctataaa
taaaatcttttaatttcataaaataaactatctcctttttaccattatgc
atgtgtcacagctctatctgttgttgttcttctaagacacaagaatgtgg
gaacttggggggcgggcagtggtgacgcacgcctttaatcccagcacttg
ggaggcagatgaaggcggatttctgagttcgaggccagcctggtctacag
agtaagttccaggacagccagggctgcacaaagaaaccctgtctcaaaat
aaccaaagggtggggggggggacgtgggaacttggcaggatgccttctag
atgccaatccacaacatcttgaagcagtggtgcagagactcacactgcaa
gggaaagtattggctcgggacccccaagaccaagttcttgcaagagacct
tcctggcttcccaagggctgaggtaggacacttaatttggacaaagg
gaattcctagaatgaacatacacatgcacgcacgcacgcacacacacaca
cacacacacacacacacacacacacacacacatacacactgtatttatta
cagtgacttacaggctgtggtccagctagctcaacaatggttggctcccg
gttgaaaggctaggaatccagtagttgttcagtccatgaggttgattgtc
tcagctggtcctcaatcgatgttggaatccccataagtaggttctaataa
tgaggaggaatgccttagcaacagcatagacaggacagatgaacttggca
ggcagggtgaaggcaggcaggcaaaaagcaaaagccttcttcttctgcat
gggctgccaccagaaggtgtggtccagatttagggttggttttccaatgc
agatgatttaatttcttctccccagtaaaaccttagtttacacaaaggcc
cttttgcattctcagaatttaagtgaattctgaccccctttttctttcct
tcatttcctttttgccagttcttttaaaactgaaatgaaagactgtgagg
ccagacctcggccaaagggaaaaagacacagtcaccaagcaaagtgcatt
ttctgtccccaacggttgccctgtgagcacaccttcttggtcaagaatga
agctttggcttgttgagacacttcagctggagtgaggttctctatcttca
ttatcccaaacttgtttctgagcgtgaccaccgcatccagttggaaggaa
tttcaaggcccctgttattggacttattacagttagagcctggtgcctgt
tagccctagcgactgaggctttggctaccagtcctcagcagatgaaatta
aacagaaaactaacagtcaaaagcagagaaaggcaattttgttcattgtg
gcccaccccagggaagaagaaccaaataaagagacctattgagcccttgc
ccccagccctgtctttcagagtgctgaccatagcattgtaggcttaaatt
aggagcaagagttatccataccctgcttaagccagtccctgggccacatg
ttgcccagacctgaccccacccattcacctccagctgcagtcctctcctt
ggtggagggagcacctctgaccgttgtcagacccttggtggaagtctcct
ttcctgggaaacatgcctctcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122343923_122344717
seq2: B6Ng01-288L08.b_48_844 (reverse)

seq1  CCTTTGTCC-AATTCTGTGTCCTACCTCAGCCCTTGGGATGCCAGGAAGG  49
      ||||||||| ||||  ||||||||||||||||||||||| ||||||||||
seq2  CCTTTGTCCAAATTAAGTGTCCTACCTCAGCCCTTGGGAAGCCAGGAAGG  50

seq1  TCTCCTGCAAGAACTTGGTCTTGGGGGTCCCGAGCCAATACTTTCCCTTG  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCAAGAACTTGGTCTTGGGGGTCCCGAGCCAATACTTTCCCTTG  100

seq1  CAGTGTGAGTCTCTGCACCACTGCTTC-AGATGTTGTGGATTGGCATCTA  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTGTGAGTCTCTGCACCACTGCTTCAAGATGTTGTGGATTGGCATCTA  150

seq1  GAAGGCATCCTGCCAAGTTCCCACGTCCCCCCCCCCACCCTTTGGTTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATCCTGCCAAGTTCCCACGTCCCCCCCCCCACCCTTTGGTTATT  200

seq1  TTGAGACAGGGTTTCTTTGTGCAGCCCTGGCTGTCCTGGAACTTACTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCTTTGTGCAGCCCTGGCTGTCCTGGAACTTACTCTG  250

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTTCATCTGCCTCCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTTCATCTGCCTCCCAA  300

seq1  GTGCTGGGATTAAAGGCGTGCGTCACCACTGCCCGCCCCCCAAGTTCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCGTGCGTCACCACTGCCCGCCCCCCAAGTTCCCA  350

seq1  CATTCTTGTGTCTTAGAAGAACAACAACAGATAGAGCTGTGACACATGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGTGTCTTAGAAGAACAACAACAGATAGAGCTGTGACACATGCA  400

seq1  TAATGGTAAAAAGGAGATAGTTTATTTTATGAAATTAAAAGATTTTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAAAAAGGAGATAGTTTATTTTATGAAATTAAAAGATTTTATTT  450

seq1  ATAGGTTAAGTATGTGTCTACAAGTGTATATTCAGACATGTGTGTGGGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAAGTATGTGTCTACAAGTGTATATTCAGACATGTGTGTGGGCG  500

seq1  CCCATAGAGGCCAGAAGAGGGCATCAGATCCCTCTGGAGCACGAGTCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAGGCCAGAAGAGGGCATCAGATCCCTCTGGAGCACGAGTCAGA  550

seq1  GGCAGGTTTGGGCCCCCAGATGTAGATGATGGGAACTGAATGCTGGTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTTGGGCCCCCAGATGTAGATGATGGGAACTGAATGCTGGTGCT  600

seq1  CTGCAAGACCAACAAGTGCTTTTAACCAAGCCTCCATCCCAGCCCTGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGACCAACAAGTGCTTTTAACCAAGCCTCCATCCCAGCCCTGAGA  650

seq1  TCCTTTATCAGAGAAGAGGAAGACACTCTCAAGTGTGGAAGGGGCACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATCAGAGAAGAGGAAGACACTCTCAAGTGTGGAAGGGGCACAGA  700

seq1  GTCATAGGAAAGGTTAGGGGTTCAAAAAGAGCACTGGTCTACTAGGGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGGAAAGGTTAGGGGTTCAAAAAGAGCACTGGTCTACTAGGGTCA  750

seq1  TGGCTAGAGGTCACTTTCATAGCTCCCACTTTCTCCAGATGGAATTC  795
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAGGTCACTTTCATAGCTCCCACTTTCTCCAGATGGAATTC  797

seq1: chr1_122176782_122177930
seq2: B6Ng01-288L08.g_70_1244

seq1  GAATTCCTAGAATGAACATACACATGCACGCACGCACGCACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAATGAACATACACATGCACGCACGCACGCACACACACACA  50

seq1  CACACACACACACACACACACACACACACACATACACACTGTATTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATACACACTGTATTTATTA  100

seq1  CAGTGACTTACAGGCTGTGGTCCAGCTAGCTCAACAATGGTTGGCTCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTACAGGCTGTGGTCCAGCTAGCTCAACAATGGTTGGCTCCCG  150

seq1  GTTGAAAGGCTAGGAATCCAGTAGTTGTTCAGTCCATGAGGTTGATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGGCTAGGAATCCAGTAGTTGTTCAGTCCATGAGGTTGATTGTC  200

seq1  TCAGCTGGTCCTCAATCGATGTTGGAATCCCCATAAGTAGGTTCTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGTCCTCAATCGATGTTGGAATCCCCATAAGTAGGTTCTAATAA  250

seq1  TGAGGAGGAATGCCTTAGCAACAGCATAGACAGGACAGATGAACTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAATGCCTTAGCAACAGCATAGACAGGACAGATGAACTTGGCA  300

seq1  GGCAGGGTGAAGGCAGGCAGGCAAAAAGCAAAAGCCTTCTTCTTCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTGAAGGCAGGCAGGCAAAAAGCAAAAGCCTTCTTCTTCTGCAT  350

seq1  GGGCTGCCACCAGAAGGTGTGGTCCAGATTTAGGGTTGGTTTTCCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCACCAGAAGGTGTGGTCCAGATTTAGGGTTGGTTTTCCAATGC  400

seq1  AGATGATTTAATTTCTTCTCCCCAGTAAAACCTTAGTTTACACAAAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTTAATTTCTTCTCCCCAGTAAAACCTTAGTTTACACAAAGGCC  450

seq1  CTTTTGCATTCTCAGAATTTAAGTGAATTCTGACCCCCTTTTTCTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATTCTCAGAATTTAAGTGAATTCTGACCCCCTTTTTCTTTCCT  500

seq1  TCATTTCCTTTTTGCCAGTTCTTTTAAAACTGAAATGAAAGACTGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTTTTGCCAGTTCTTTTAAAACTGAAATGAAAGACTGTGAGG  550

seq1  CCAGACCTCGGCCAAAGGGAAAAAGACACAGTCACCAAGCAAAGTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTCGGCCAAAGGGAAAAAGACACAGTCACCAAGCAAAGTGCATT  600

seq1  TTCTGTCCCCAACGGTTGCCCTGTGAGCACACCTTCTTGGTCAAGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCCCAACGGTTGCCCTGTGAGCACACCTTCTTGGTCAAGAATGA  650

seq1  AGCTTTGGCTTGTTGAGACACTTCAGCTGGAGTGAGGTTCTCTATCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCTTGTTGAGACACTTCAGCTGGAGTGAGGTTCTCTATCTTCA  700

seq1  TTATCCCAAACTTGTTTCTGAGCGTGACCACCGCATCCAGTTGGAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCAAACTTGTTTCTGAGCGTGACCACCGCATCCAGTTGGAAGGAA  750

seq1  TTTCAAGGCCCCTGTTATTGGACTTATTACAGTTAGAGCCTGGTGCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCCCCTGTTATTGGACTTATTACAGTTAGAGCCTGGTGCCTGT  800

seq1  TAGCCCTAGCGACTGAGGC-TTGGCTACCAGTCCTCAGCAGATG-AATTA  848
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TAGCCCTAGCGACTGAGGCTTTGGCTACCAGTCCTCAGCAGATGAAATTA  850

seq1  AACAGAAAACTAACAGTCAAAAGCAGAGAAAAGCAA-TTTGTTCAATGTG  897
      ||||||||||||||||||||||||||||||| |||| |||||||| ||||
seq2  AACAGAAAACTAACAGTCAAAAGCAGAGAAAGGCAATTTTGTTCATTGTG  900

seq1  GCC--ACCCAGGGAAGAAGAA-CAAATAAAGAGACCTAATGAG-CCTTGC  943
      |||   ||||||||||||||| |||||||||||||||| |||| ||||||
seq2  GCCCACCCCAGGGAAGAAGAACCAAATAAAGAGACCTATTGAGCCCTTGC  950

seq1  CCCCAGCCCTGTC-TTCAGAGTGCTGA-CATAGCA-TGTAGGCTTAAATA  990
      ||||||||||||| ||||||||||||| ||||||| ||||||||||||| 
seq2  CCCCAGCCCTGTCTTTCAGAGTGCTGACCATAGCATTGTAGGCTTAAATT  1000

seq1  GGGAGCAAGAGTTATTCATACCCTGCTTAAG-CAGTCC--TGGCCACAAT  1037
       |||||||||||||| ||||||||||||||| ||||||   |||||||  
seq2  AGGAGCAAGAGTTATCCATACCCTGCTTAAGCCAGTCCCTGGGCCACATG  1050

seq1  GTGCCCAGA-CTGA-CCCACC--ATCACCT-CAGCTGCAGT-CTCTCCT-  1080
       |||||||| |||| ||||||   |||||| |||||||||| ||||||| 
seq2  TTGCCCAGACCTGACCCCACCCATTCACCTCCAGCTGCAGTCCTCTCCTT  1100

seq1  -GT-GAGGGAGGCACTCTGACAGGTTGTCAGA-ACTTTGTGG-AGTCTC-  1125
       || |||||||   |||||||  |||||||||  ||| |||| |||||| 
seq2  GGTGGAGGGAGCACCTCTGAC-CGTTGTCAGACCCTTGGTGGAAGTCTCC  1149

seq1  -TTTCTGGGAGACATG-CTCTCCCAT  1149
       || |||||| ||||| |||||||||
seq2  TTTCCTGGGAAACATGCCTCTCCCAT  1175