BAC Information

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BAC

Clone NameB6Ng01-288L09
Chromosome1 (Build37)
Map Location 17,424,366 - 17,558,896
singlet/doubletdoublet
Overlap genenone
Upstream geneUbe2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1
Downstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288L09.bB6Ng01-288L09.g
ACCGA086304GA086305
length7921,190
definitionB6Ng01-288L09.b B6Ng01-288L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,424,366 - 17,425,051)(17,557,710 - 17,558,896)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaaatgcctctgg
tattacactatcactttgaataaaagctaagtcactgccgtacacaggaa
tttacggtcatctaggaagaaggaagtttgagacctaaggaggaaccaga
gtagatacttagaactatagatagctgagttacacccatacacacgtatt
tacaatggcctagggggaaggtagactatacaatagactaaaataggaac
tatggcaagggcacgaagcccttgaccctggcttctaagattaaggtgga
gctctttttgatcccagttgttaacaatgaattctatcccaggtgattcc
tgttagaccttctgtgtttgtattcctctgttttgtgtaagaatccagta
acctctttgtaccttgtgggtgtgtcacccaactttcctattttcttctg
tataaaaaatttgatgctcgatttgacaaattacattcagattctacagg
acctctcctgtgtgcatctgtctgccattccctccgatgctttgcccacc
tgccccagagacccgttccacgcagacaaagggatccagagggtctgcag
cagatgatgaatatggatgtcaaacatctgttcccctgcccattagactt
ttatcaagctcaggattatagccctaccagtgcatcaagaataaagggga
tttgaggaagaagttaaaagaaacttctgaaattaaaaggttttttttgt
tgttgttgttctgtttttggttttttttgggggggggttgtt

gaattcttgggaggttaaatatacttttttttaaaatcttctattacctt
aaagagaaacattgttatcatgaatgtttatattcaaaacatattataat
agtgtgtgaggttacacagagaagttaactggcaaagtaaatgtagatga
cagtgggagtaagaaagcttttagagctgaacagtaatagttagctgtca
ttgttgagtctttcagttgctagcaccaaaaacatactgtgttttcagag
ggaatgaagaggctacttcccattcatcttaaataattgtatgttagtag
tatgcttattatctttgtgtttgcttcttatcttaattttcttgtgaata
ctaaggcagacaaacatcattaccaaattcagtttgtgtctctttgtggt
agactccactgactatatacttcacaaatattaacaactacaaaaaataa
tggcaaatgctcctgaggcagttgttttttatttgttttgtatctgtgga
tggcacactaatgagaaaaagacaatcatacatagcatataagaggagaa
tttgaaatctaggactcagagtcaaaccactcctttcaaagagagcagct
ttaggaaaaacagaggatcgtgagaaaggagagaatagggtgataggaaa
tcagaataaattaaataacaaaaaattattttgctatgataggatgctaa
cattaaatataaaaattttgaaacagtgttaattcacgcactaagatctg
gggtggtggggacacatgccttaaatcccagctcttatgaggcagaggct
ggcagttctctaagttcaaggataagtacagtatacagaatgagttctag
gacagctaagactaaacagaaatccctgtctcaaaacccaaatagatgga
tagtttaaatgataggtaggcaagggggaataaaattagagaagccagtg
aaggttgttgtgacaggttaaaggacaccacaccacagcgggtagcatac
attttactcaaaatggtgaaacccattaaaagtaaataaatccacaaagt
ttgtctacgttagatgtataattaacaattttgttatatgaaagagttat
tgctgtacagcctcagccataccacagaatactatagagaatatgcttaa
atattagaaatggttaccaatatggtttgagttagcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17424366_17425051
seq2: B6Ng01-288L09.b_157_842

seq1  GTCATCTAGGAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAGGAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGAT  50

seq1  ACTTAGAACTATAGATAGCTGAGTTACACCCATACACACGTATTTACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAACTATAGATAGCTGAGTTACACCCATACACACGTATTTACAAT  100

seq1  GGCCTAGGGGGAAGGTAGACTATACAATAGACTAAAATAGGAACTATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGGGGAAGGTAGACTATACAATAGACTAAAATAGGAACTATGGC  150

seq1  AAGGGCACGAAGCCCTTGACCCTGGCTTCTAAGATTAAGGTGGAGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACGAAGCCCTTGACCCTGGCTTCTAAGATTAAGGTGGAGCTCTT  200

seq1  TTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGATTCCTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGATTCCTGTTAG  250

seq1  ACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAACCTCT  300

seq1  TTGTACCTTGTGGGTGTGTCACCCAACTTTCCTATTTTCTTCTGTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTGTGGGTGTGTCACCCAACTTTCCTATTTTCTTCTGTATAAA  350

seq1  AAATTTGATGCTCGATTTGACAAATTACATTCAGATTCTACAGGACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATGCTCGATTTGACAAATTACATTCAGATTCTACAGGACCTCT  400

seq1  CCTGTGTGCATCTGTCTGCCATTCCCTCCGATGCTTTGCCCACCTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCATCTGTCTGCCATTCCCTCCGATGCTTTGCCCACCTGCCCC  450

seq1  AGAGACCCGTTCCACGCAGACAAAGGGATCCAGAGGGTCTGCAGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCGTTCCACGCAGACAAAGGGATCCAGAGGGTCTGCAGCAGATG  500

seq1  ATGAATATGGATGTCAAACATCTGTTCCCCTGCCCATTAGACTTTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGGATGTCAAACATCTGTTCCCCTGCCCATTAGACTTTTATCA  550

seq1  AGCTCAGGATTATAGCCCTACCAGTGCATCAAGAATAAAGGGGATTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGATTATAGCCCTACCAGTGCATCAAGAATAAAGGGGATTTGAG  600

seq1  GAAGAAGTTAAAAGAAACTTCTGAAATTAAAAGGTTTTTTTTGTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTAAAAGAAACTTCTGAAATTAAAAGGTTTTTTTTGTTGTTGT  650

seq1  TGTTCTGTTTTTGGTTTTTTTTGGGGGGGGGTTGTT  686
      ||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTTTTGGTTTTTTTTGGGGGGGGGTTGTT  686


seq1: chr1_17557710_17558896
seq2: B6Ng01-288L09.g_72_1261 (reverse)

seq1  TGTTGCTA---CTAAACATATGTGGTAA-CATTTCTAATAATTTAAACCC  46
      ||||||||   | || ||||| |||||| |||||||||| ||||||   |
seq2  TGTTGCTAACTCAAACCATAT-TGGTAACCATTTCTAAT-ATTTAA--GC  46

seq1  ATAATCTCTATAGTATCTTGT-GTAT-GCTGAGGCTGTACAGCAATAACC  94
      ||| ||||||||||||  ||| |||| ||||||||||||||||||||| |
seq2  ATATTCTCTATAGTATTCTGTGGTATGGCTGAGGCTGTACAGCAATAA-C  95

seq1  TCTTTTCATATAACAAAA-TGTTAATTATACATTCTAACGTAGAACAAAC  143
      || ||||||||||||||| ||||||||||||| |||||||||| ||||||
seq2  TC-TTTCATATAACAAAATTGTTAATTATACA-TCTAACGTAG-ACAAAC  142

seq1  TTTGGTGATTTATTTACTTTTAATGGTTTCCACCCTTTTGAGTAAAATGT  193
      ||||  |||||||||||||||||||| || |||| |||||||||||||||
seq2  TTTGTGGATTTATTTACTTTTAATGGGTTTCACCATTTTGAGTAAAATGT  192

seq1  ATGCTA-CCGCTGT-GTGTGGTGTCCTTTTAACCTGTCAC-ACAACCTTC  240
      |||||| ||||||| ||||||||||| ||||||||||||| |||||||||
seq2  ATGCTACCCGCTGTGGTGTGGTGTCC-TTTAACCTGTCACAACAACCTTC  241

seq1  ACT-GCTTCTCTAATTTTATTCCCCCTTGCCTACCTATCATTT-AACTAT  288
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTGGCTTCTCTAATTTTATTCCCCCTTGCCTACCTATCATTTAAACTAT  291

seq1  CCATCTATTTGGGTTTTTGAGACA-GGATTTCTGTTTAGTCTTAGCTGTC  337
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  CCATCTATTTGGG-TTTTGAGACAGGGATTTCTGTTTAGTCTTAGCTGTC  340

seq1  CTAGAACTCATTCTGTATACTGTAC-TGTCCTTGAACTTAGAGAACTGCC  386
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  CTAGAACTCATTCTGTATACTGTACTTATCCTTGAACTTAGAGAACTGCC  390

seq1  AGCCTCTGCCTCATAAGAGCTGGGATTTAAGGCATGTGTCCCCACCACCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGCCTCATAAGAGCTGGGATTTAAGGCATGTGTCCCCACCACCC  440

seq1  CAGATCTTTAGTGCGTGAATTAACACTGTTTCAAAATTTTTATATTTAAT  486
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATC-TTAGTGCGTGAATTAACACTGTTTCAAAATTTTTATATTTAAT  489

seq1  GTTAGCATCCTATCATAGCAAAATAATTTTTTGTTATTTAATTTATTCTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCCTATCATAGCAAAATAATTTTTTGTTATTTAATTTATTCTG  539

seq1  ATTTCCTATCACCCTATTCTCTCCTTTCTCACGATCCTCTGTTTTTCCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTATCACCCTATTCTCTCCTTTCTCACGATCCTCTGTTTTTCCTA  589

seq1  AAGCTGCTCTCTTTGAAAGGAGTGGTTTGACTCTGAGTCCTAGATTTCAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCTCTTTGAAAGGAGTGGTTTGACTCTGAGTCCTAGATTTCAA  639

seq1  ATTCTCCTCTTATATGCTATGTATGATTGTCTTTTTCTCATTAGTGTGCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTCTTATATGCTATGTATGATTGTCTTTTTCTCATTAGTGTGCC  689

seq1  ATCCACAGATACAAAACAAATAAAAAACAACTGCCTCAGGAGCATTTGCC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGATACAAAACAAATAAAAAACAACTGCCTCAGGAGCATTTGCC  739

seq1  ATTATTTTTTGTAGTTGTTAATATTTGTGAAGTATATAGTCAGTGGAGTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTGTAGTTGTTAATATTTGTGAAGTATATAGTCAGTGGAGTC  789

seq1  TACCACAAAGAGACACAAACTGAATTTGGTAATGATGTTTGTCTGCCTTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAAGAGACACAAACTGAATTTGGTAATGATGTTTGTCTGCCTTA  839

seq1  GTATTCACAAGAAAATTAAGATAAGAAGCAAACACAAAGATAATAAGCAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACAAGAAAATTAAGATAAGAAGCAAACACAAAGATAATAAGCAT  889

seq1  ACTACTAACATACAATTATTTAAGATGAATGGGAAGTAGCCTCTTCATTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAACATACAATTATTTAAGATGAATGGGAAGTAGCCTCTTCATTC  939

seq1  CCTCTGAAAACACAGTATGTTTTTGGTGCTAGCAACTGAAAGACTCAACA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAACACAGTATGTTTTTGGTGCTAGCAACTGAAAGACTCAACA  989

seq1  ATGACAGCTAACTATTACTGTTCAGCTCTAAAAGCTTTCTTACTCCCACT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTAACTATTACTGTTCAGCTCTAAAAGCTTTCTTACTCCCACT  1039

seq1  GTCATCTACATTTACTTTGCCAGTTAACTTCTCTGTGTAACCTCACACAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTACATTTACTTTGCCAGTTAACTTCTCTGTGTAACCTCACACAC  1089

seq1  TATTATAATATGTTTTGAATATAAACATTCATGATAACAATGTTTCTCTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATATGTTTTGAATATAAACATTCATGATAACAATGTTTCTCTT  1139

seq1  TAAGGTAATAGAAGATTTTAAAAAAAAGTATATTTAACCTCCCAAGAATT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAATAGAAGATTTTAAAAAAAAGTATATTTAACCTCCCAAGAATT  1189

seq1  C  1187
      |
seq2  C  1190


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