BAC Information

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BAC

Clone NameB6Ng01-288O15
Chromosome1 (Build37)
Map Location 97,048,341 - 97,191,301
singlet/doubletdoublet
Overlap geneLOC383603
Upstream geneLOC666012, LOC666025, LOC100040685
Downstream geneTmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O15.bB6Ng01-288O15.g
ACCGA086455GA086456
length9731,144
definitionB6Ng01-288O15.b B6Ng01-288O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,048,341 - 97,048,866)(97,190,145 - 97,191,301)
sequence
actataaacacactttatctaatcaaccagttctatttttttattaggta
ttttcctcgtttacattttcaatgctatcccaaaagtcccccatacccac
ccccccaattccctacccacccactccccctttttggccctggggttccc
ctgtactggggcatataaagtttgcaagtccaatgggcctctctttgcag
tgatggccgactaggccatcttttgatacatatgcagctaaagacaagag
ctccggggtactggttagttcatattgttgttacacctatagggatgcag
ttccctttagctccttgggtaatttctctagctcctccattgggggccat
gtgatccatacaatagctgacagtgatcatccacttctgtgtttgatagg
ccccggcatagtctcacaagagacagctatatctgggtcctttcagcaaa
atcttgctagtgtatgcaatggtgtcagcgtttggaagctgattatggga
tggatccctgcatatggcaatcactagatggtccatcctttcgtcacagc
tccaaattttgtctctgtaaccccttccatgggtgttttgttcccaattg
taagaaggagcaaagtgtccaaactttggtcttcgttcttcttgaatttc
atgcatttagcaaattctatcttatatcttgggtatcctaagttttgggc
taatatccacttatcagtgagaacatattgtgtgagttcctctgtgattg
ggttaactcactcaggatgatgccctccaggtccatccatttgcctagga
ttttcataaattcattctttttaatagctgagtagtactccattgtgtag
atgtaccacattttctgtatctattcctctgttgaggggcatctaggttc
tttccagcttctggctattataaataagctgctatgaacatagtggagca
ttgttgtccttcttaccggttgg
gaattcatgtaaacactggcagtactgatgggacctgagggtttcagcag
gaaaggcatttgctgtgcgggagagaagagtgggcttgcaaatgaaccaa
attaattacatgtgtccattaaactgccaaataatcataagtaataaata
aaatagagggacaaaaagaagcaattcttaaaaacacacatatgtactat
gtcaaatactttggtcgatcttggcaactgagggcaatctttctccttcc
ctcccttcctcatgttatttaggaaacactcccttaagcacagacctgag
acacaggttacacgaggtaggggatcataagcgcctgtgccagaggttaa
cccatttacacatactggaagcaagtttgtactttcactgtgttgtgaat
ctcttatctcccatttaagacgcatagtaagtctggttttgacaatgaat
aacaggactttttttctcaaacgtgttatgttatattagaacaatattct
agtgtaaaacactgagctcattgttcagctaccaatattgttcaccactt
cgtggaggcatttattaagaattatattaaataatatataacaactgttg
atggaaccttgttgatatttgtcccagaaccttaaactctttcatggata
acaagtggctgtactcatcaatacaatggactgaaatctaattaagagtt
gtttaagggcaaaaggaattcactgatgtgtataaattaaaagtctgctt
ttattaattgttttccattggatgcaaccaggatttagaaactgtgacct
agttgttctccaaatttctttcttagtagcgagatacagagaagtgaact
atttgaaataaatatcagtctcccgattgatgtcatgcactgctgtggcc
ctctcttctcctgagctttatgtctcctatttagttaaacattaattaaa
attatttaaggaaattattttcctcaatagctaaatttgtttctactgat
ctctaaagtgatgcacaatagctatatgtataaatgtgaaaggataattt
atcatctcatcttatcaggcaaaattggctgaaactagacttagagatta
ttcacattatgcatattctctagcagtccaattgaaaaacaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97048341_97048866
seq2: B6Ng01-288O15.b_54_579

seq1  ACTATAAACACACTTTATCTAATCAACCAGTTCTATTTTTTTATTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAACACACTTTATCTAATCAACCAGTTCTATTTTTTTATTAGGTA  50

seq1  TTTTCCTCGTTTACATTTTCAATGCTATCCCAAAAGTCCCCCATACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCGTTTACATTTTCAATGCTATCCCAAAAGTCCCCCATACCCAC  100

seq1  CCCCCCAATTCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAATTCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCC  150

seq1  CTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAG  200

seq1  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAG  250

seq1  CTCCGGGGTACTGGTTAGTTCATATTGTTGTTACACCTATAGGGTTGCAG  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCCGGGGTACTGGTTAGTTCATATTGTTGTTACACCTATAGGGATGCAG  300

seq1  TTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCAT  350

seq1  GTGATCCATACAATAGCTGACAGTGATCATCCACTTCTGTGTTTGATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCATACAATAGCTGACAGTGATCATCCACTTCTGTGTTTGATAGG  400

seq1  CCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAA  450

seq1  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGA  500

seq1  TGGATCCCTGCATATGGCAATCACTA  526
      ||||||||||||||||||||||||||
seq2  TGGATCCCTGCATATGGCAATCACTA  526

seq1: chr1_97190145_97191301
seq2: B6Ng01-288O15.g_69_1212 (reverse)

seq1  ATTTGTTTTTTCTAAATTTGAACTGCTAGAG-ATATGCATAATGTGAATA  49
      ||||||||||     | ||| |||||||||| ||||||||||||||||||
seq2  ATTTGTTTTT----CAATTGGACTGCTAGAGAATATGCATAATGTGAATA  46

seq1  ATCTCTAGTTCTTAGTTTCAGCCAATTTTTGCTTGAATAAGATGAAGATG  99
      |||||||  || ||||||||||||| |||||| || |||||||| |||||
seq2  ATCTCTAAGTC-TAGTTTCAGCCAA-TTTTGCCTG-ATAAGATG-AGATG  92

seq1  ATAAATTATCC-TTCACATTTATACATATAAGCTA-TGTGCATCACTTTA  147
      ||||||||||| ||||||||||||||||| ||||| ||||||||||||||
seq2  ATAAATTATCCTTTCACATTTATACATAT-AGCTATTGTGCATCACTTTA  141

seq1  AGGAGATCAAGTAAGAAAACAAATTTTAGCTATTGAGGAAAATAATTTCC  197
        |||||| ||||   ||||||| ||||||||||||||||||||||||||
seq2  --GAGATC-AGTA--GAAACAAA-TTTAGCTATTGAGGAAAATAATTTCC  185

seq1  TTAAATAATTTTAATTAATGTTTAACTAAATAGGAGACATAAAGCTCAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTTTAATTAATGTTTAACTAAATAGGAGACATAAAGCTCAGG  235

seq1  AGAAGAGAGGGCCACAGCAGTGCATGACAATCAATCGGGAGACTGATATT  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAAGAGAGGGCCACAGCAGTGCATGAC-ATCAATCGGGAGACTGATATT  284

seq1  TATTTCAAATAGTTCACTTCTCTGTATCTCGCTACTAAGAAAGAAATTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAATAGTTCACTTCTCTGTATCTCGCTACTAAGAAAGAAATTTG  334

seq1  GAGAACAACTAGGTCACAGTTTCTAAATCCTGGTTGCATCCAATGGAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAACTAGGTCACAGTTTCTAAATCCTGGTTGCATCCAATGGAAAA  384

seq1  CAATTAATAAAAGCAGACTTTTAATTTATACACATCAGTGAATTCCTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATAAAAGCAGACTTTTAATTTATACACATCAGTGAATTCCTTTT  434

seq1  GCCCTTAAACAACTCTTAATTAGATTTCAGTCCATTGTATTGATGAGTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAAACAACTCTTAATTAGATTTCAGTCCATTGTATTGATGAGTAC  484

seq1  AGCCACTTGTTATCCATGAAAGAGTTTAAGGTTCTGGGACAAATATCAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTGTTATCCATGAAAGAGTTTAAGGTTCTGGGACAAATATCAAC  534

seq1  AAGGTTCCATCAACAGTTGTTATATATTATTTAATATAATTCTTAATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCATCAACAGTTGTTATATATTATTTAATATAATTCTTAATAAA  584

seq1  TGCCTCCACGAAGTGGTGAACAATATTGGTAGCTGAACAATGAGCTCAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCACGAAGTGGTGAACAATATTGGTAGCTGAACAATGAGCTCAGT  634

seq1  GTTTTACACTAGAATATTGTTCTAATATAACATAACACGTTTGAGAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACTAGAATATTGTTCTAATATAACATAACACGTTTGAGAAAAA  684

seq1  AAGTCCTGTTATTCATTGTCAAAACCAGACTTACTATGCGTCTTAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGTTATTCATTGTCAAAACCAGACTTACTATGCGTCTTAAATGG  734

seq1  GAGATAAGAGATTCACAACACAGTGAAAGTACAAACTTGCTTCCAGTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAGATTCACAACACAGTGAAAGTACAAACTTGCTTCCAGTATG  784

seq1  TGTAAATGGGTTAACCTCTGGCACAGGCGCTTATGATCCCCTACCTCGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGGTTAACCTCTGGCACAGGCGCTTATGATCCCCTACCTCGTG  834

seq1  TAACCTGTGTCTCAGGTCTGTGCTTAAGGGAGTGTTTCCTAAATAACATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGTCTCAGGTCTGTGCTTAAGGGAGTGTTTCCTAAATAACATG  884

seq1  AGGAAGGGAGGGAAGGAGAAAGATTGCCCTCAGTTGCCAAGATCGACCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGGGAAGGAGAAAGATTGCCCTCAGTTGCCAAGATCGACCAA  934

seq1  AGTATTTGACATAGTACATATGTGTGTTTTTAAGAATTGCTTCTTTTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGACATAGTACATATGTGTGTTTTTAAGAATTGCTTCTTTTTGT  984

seq1  CCCTCTATTTTATTTATTACTTATGATTATTTGGCAGTTTAATGGACACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATTTTATTTATTACTTATGATTATTTGGCAGTTTAATGGACACA  1034

seq1  TGTAATTAATTTGGTTCATTTGCAAGCCCACTCTTCTCTCCCGCACAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAATTTGGTTCATTTGCAAGCCCACTCTTCTCTCCCGCACAGCA  1084

seq1  AATGCCTTTCCTGCTGAAACCCTCAGGTCCCATCAGTACTGCCAGTGTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTCCTGCTGAAACCCTCAGGTCCCATCAGTACTGCCAGTGTTT  1134

seq1  ACATGAATTC  1157
      ||||||||||
seq2  ACATGAATTC  1144