BAC Information

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BAC

Clone NameB6Ng01-289G02
Chromosome1 (Build37)
Map Location 190,255,265 - 190,256,378
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289G02.bB6Ng01-289G02.g
ACCGA086800GA086801
length1,113809
definitionB6Ng01-289G02.b B6Ng01-289G02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaattgatattctgttcttgctactttcttcctaatattagt
catgagtctgcatctcacatttataattttaattattttctacaaatatg
acattttagtgtcttttgactttgtagcactgtgcagtgtcccaaattga
catctgaaggtcacctgcagttcatcactttatagctatattatatagtc
acaactttataaatatgttatatattcatagtcataaataaacttctgtg
tttcctctaagaccatataaccatactttcccagaattcctaaacaatgg
ctcctggaaacatatgattgcggccgtccacagcatgctgtgctgcacag
tgcatattgtccttgtgtgattgttggtttgtcaagagtcaaaatgctag
gaaattccatgcatgatgatgtcacagccagtctgtttgtttggaacaat
gacttacatggaactccactttctacatttaagggatctggggaagggga
gaaaaggagaacaaaagggaaacgggaagggggaagagacttgggagcag
tgggcactacaacttgcttttctatgctaataacagccagtgagaacagc
caatgtcacaagaattctaggtgacagacggacattagtgtggtagcagt
tgttaaaactgggagctgttctttgcttaagcataacaggcagtctgaag
gttttcctggatattctaagtggctcactgtgtccctcacattggctatc
actagggtattatcaccatgacgatatttcctatttcctggaaacatact
ggtgacatctgtgaccagttgggagtgagacaaggattgagtcctgggat
ctaaattccagttgtagaggattgtatatactgaaagtagtaaaggccct
ctctagacaggcagtgcccatggggtcctgggatctaacttcccggttgc
agcaattgcatgtaatgaaagtggtaatgtcctctctggctttccgtttc
tctctggtccaggtctctttttttcctgttgcttatttattcctttcaga
gctagtcactcttgtaaatcagaagaagacagaggaatggtgataaatgg
gttggttttatgt

gaattccaggcatgcccccccggggctcctggttgaagtgattctgagga
gtgaacccaaagccgtcagctcacatgggcaactgaactagcctttgcta
tttactttctgtcttccaaggagtcacatgactccttggttcttcctctg
ctattgctgagttgggatcctgtctggagtaggtattttttcatacagca
ctgagcaaagctggcacattcatagcctcttgaattagtatacccgagaa
ataagatacaatttgtaaaacacatgaaactcaagaagaacaaagaccaa
agtgtggacactttgccccttcttagaattggaaacaatcacccatggaa
ggagttacagagacaaagtttggagctgagacaaaaggatgaaccatcta
gagactgccatatccagggatccatcccataattagcctccaaatgatga
caccattgcatacactagcaagattttgctgaaaggaccctgatatagct
gtctcttgtgagactatgccagggcctagcaaacacagaagtggatgctc
acaggatgatcaaaggcccccaatggaggagctagagaaagtatccaagg
agctaaagagatctgcaaccctgtaggtgcaacaacattatgatctaacc
agtaccccggagctcttgactctagctgcatatgtaacaaaagatggcct
agttggccatcactggaaagagaggcccattggacttgcaaactttatat
gccccagtacaggggaacgccagggccaaaaagtgggaatgggtgggtag
ggggagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190255265_190256378
seq2: B6Ng01-289G02.b_43_1155

seq1  GAATTCTTTAATTGATATTCTGTTCTTGCTACTTTCTTCCTAATATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATTGATATTCTGTTCTTGCTACTTTCTTCCTAATATTAGT  50

seq1  CATGAGTCTGCATCTCACATTTATAATTTTAATTATTTTCTACAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCTGCATCTCACATTTATAATTTTAATTATTTTCTACAAATATG  100

seq1  ACATTTTAGTGTCTTTTGACTTTGTAGCACTGTGCAGTGTCCCAAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAGTGTCTTTTGACTTTGTAGCACTGTGCAGTGTCCCAAATTGA  150

seq1  CATCTGAAGGTCACCTGCAGTTCATCACTTTATAGCTATATTATATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAGGTCACCTGCAGTTCATCACTTTATAGCTATATTATATAGTC  200

seq1  ACAACTTTATAAATATGTTATATATTCATAGTCATAAATAAACTTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTATAAATATGTTATATATTCATAGTCATAAATAAACTTCTGTG  250

seq1  TTTCCTCTAAGACCATATAACCATACTTTCCCAGAATTCCTAAACAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTAAGACCATATAACCATACTTTCCCAGAATTCCTAAACAATGG  300

seq1  CTCCTGGAAACATATGATTGCGGCCGTCCACAGCATGCTGTGCTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAAACATATGATTGCGGCCGTCCACAGCATGCTGTGCTGCACAG  350

seq1  TGCATATTGTCCTTGTGTGATTGTTGGTTTGTCAAGAGTCAAAATGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTGTCCTTGTGTGATTGTTGGTTTGTCAAGAGTCAAAATGCTAG  400

seq1  GAAATTCCATGCATGATGATGTCACAGCCAGTCTGTTTGTTTGGAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCATGCATGATGATGTCACAGCCAGTCTGTTTGTTTGGAACAAT  450

seq1  GACTTACATGGAACTCCACTTTCTACATTTAAGGGATCTGGGGAAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACATGGAACTCCACTTTCTACATTTAAGGGATCTGGGGAAGGGGA  500

seq1  GAAAAGGAGAACAAAAGGGAAACGGGAAGGGGGAAGAGACTTGGGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGAACAAAAGGGAAACGGGAAGGGGGAAGAGACTTGGGAGCAG  550

seq1  TGGGCACTACAACTTGCTTTTCTATGCTAATAACAGCCAGTGAGAACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTACAACTTGCTTTTCTATGCTAATAACAGCCAGTGAGAACAGC  600

seq1  CAATGTCACAAGAATTCTAGGTGACAGACGGACATTAGTGTGGTAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCACAAGAATTCTAGGTGACAGACGGACATTAGTGTGGTAGCAGT  650

seq1  TGTTAAAACTGGGAGCTGTTCTTTGCTTAAGCATAACAGGCAGTCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAACTGGGAGCTGTTCTTTGCTTAAGCATAACAGGCAGTCTGAAG  700

seq1  GTTTTCCTGGATATTCTAAGTGGCTCACTGTGTCCCTCACATTGGCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGGATATTCTAAGTGGCTCACTGTGTCCCTCACATTGGCTATC  750

seq1  ACTAGGGTATTATCACCATGACGATATTTCCTATTTCCTGGAAACATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTATTATCACCATGACGATATTTCCTATTTCCTGGAAACATACT  800

seq1  GGTGACATCTGTGACCAGTTGGGAGTGAGACAAGGATTGAGTCCTGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATCTGTGACCAGTTGGGAGTGAGACAAGGATTGAGTCCTGGGAT  850

seq1  CTAAATTCCAGTTGTAGAGGATTGTATATACTGAAAGTAGT-AAGGCCCT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAAATTCCAGTTGTAGAGGATTGTATATACTGAAAGTAGTAAAGGCCCT  900

seq1  CTCTAGACAGGCAGTGCCCATGGGGTCCTGGGATCTAACTT-CCGGTTGC  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTAGACAGGCAGTGCCCATGGGGTCCTGGGATCTAACTTCCCGGTTGC  950

seq1  AGCAAATTGCATGTAATGAAAGTGGTAATGTCCTCTCTGGCTTTCCGTTT  998
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGC-AATTGCATGTAATGAAAGTGGTAATGTCCTCTCTGGCTTTCCGTTT  999

seq1  CTCTCTGGTCCAAGTCTCTTTTTTTCCTGTTGCTTAATTTATCCTTTCAA  1048
      |||||||||||| ||||||||||||||||||||||| ||  ||||||| |
seq2  CTCTCTGGTCCAGGTCTCTTTTTTTCCTGTTGCTTATTTATTCCTTTC-A  1048

seq1  GAGCTAGTCACCTCTGTAAATCAGA--GAGACAGAAGAAAATTGGTGATT  1096
      |||||||||||   |||||||||||   ||||||| |||   ||||||| 
seq2  GAGCTAGTCACTCTTGTAAATCAGAAGAAGACAGAGGAA---TGGTGATA  1095

seq1  AAATGGTTGTTTTTATGT  1114
      ||  ||||| ||||||||
seq2  AATGGGTTGGTTTTATGT  1113


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