BAC Information

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BAC

Clone NameB6Ng01-290G20
Chromosome1 (Build37)
Map Location 91,445,617 - 91,567,607
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290G20.bB6Ng01-290G20.g
ACCGA087572GA087573
length1,1561,036
definitionB6Ng01-290G20.b B6Ng01-290G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,566,454 - 91,567,607)(91,445,617 - 91,446,633)
sequence
gaattctctaaactttccccctgacttttctactgcggaattatctttta
attcttttttaaagagttcaaaatgcaattactagaaaccaatggaccgt
ccaggaaagcaacgcccaacgagaaaacacattctagagctgcagtgagc
atagctgaggagagaggggcccctcgaaggttatctggaagcccctctac
agtactgtgtggactaaattaatgtctggatgatttaaaaagtctattag
ccacgcagcggtgtggctcactggtgtaccaccatgcgtcgtcttaagcg
gcaagcaatgcttccttttattacttctggccggttagaaaactgatttc
aaagttaaagcagtctactgtgcaacggaaagataacagaggcaaaaact
gaaaatctctttttgacaaaatgtcaatattcggggagcaatgagcaacg
gtctgtttgccagactcctgagccaattatctcggaaggattgttgacgc
tacgtgaactgcccagtggctgggctggcaggtgtcgggaggagggcacc
tggggaacgaaagctgcaggagcgccagccaccgtccacgtctcgtcgtc
tgctggcatgagcaaatgtaagcacggtgattgtctgacagatttatttt
attatgagagaaagatctgagactcgtcctccttaataacagtgctgaca
agtgacaacttcactccattacttttcaatgggaacattactcacgcaat
attgaaaatggagaaacattttcctgtgcttttcaaatctgagatgatat
atgaaacagagagactcggtggtgtccagtgctgctgggagcagctaatg
aaattcagattcgaaaggatgtgggacgaaacagaggacgcttctgaaac
agtatccaaaaaggcaaagctctgagatttaataaaagcaaggtctgatg
ggacagcctactgccaaaatttctgatgcaagaccgaaggggaaggtgct
tgtgatggcaactgggcttggcaccacaaaggtgccgactctgcccccgg
cagtgcacgtgaaggaacgcacactctcagctgaacagccagagctcagc
ctgcgtttgtcagttgactcctcaatgctcatgcagctggcctcaatcag
gatccc
gaattctagccatcctttactgagcgaagaaggtgcaggtccagtaggac
acgggaacaaagagcccacagtgtggcagttggtcggtgagtagggagag
gacagatccagtgtccagcatacgtgggtcaaccaccatgttgggaacta
ctgccctgtgtctgcggctcttctcctgaagagcagggagattctgttgg
agcagagagtgccagcagtgtccttagatgagcagagggagtgtaggtgc
agtggtgagacagaaagaagggactcgtcacttctaggacacttgcttgg
caggaaggaagctgggtggaagggctggctaaagagcaagtgggtggagt
tgtgttgttcagggaggaaagagtaagctgggatcttcaaaggaaggtgg
acaggactgctgggtctcagacgacctgtctcttacattagatacaacat
ggctggctttgtggagaatgaggaagacagtgggctgtagggatggtctt
gactggggaggagagaagggcagaggaacattggctggcagtgtccagtt
tacatggggaccacatagggcttttacgagttagaaatgactgaccatct
gacatggctgacttcatgagtgacccttactcaagggaattttatgcctt
gttaaagcaagatagcaaccgcatcactccatgtcactgaccgttttaca
tttcatttttctagccttatggtcgtggcatgaacttgagacttcaaaat
acagttatatgaaaaatatttctgctaaacaaaacacgtgtcgaagagaa
agttattttttagaagcccacagacttatcacatagcccttgtatttttt
tattttctggtgggattcttcccccacattttctctgtatatcatttgaa
aagatgttcaaggatagggttctatagccttactgcataaaacaatttcc
cacaggtgcgttctggggaaggtccatgttggttctctaaggtcattatt
taggatacagggactaaggggggttgggtctgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91566454_91567607
seq2: B6Ng01-290G20.b_43_1198 (reverse)

seq1  GGGATCCCTGA-TGAGGGCAGCTGCATGAGGCACTGAGGAGCCACTGGAC  49
      ||||| ||||| ||||| ||||||||||| ||| ||||||| ||   |||
seq2  GGGAT-CCTGATTGAGGCCAGCTGCATGA-GCATTGAGGAGTCAACTGAC  48

seq1  AAACGCAGCCGGAGCTCCTGCTG-TCAGCTGAGAGTGTGCGT--CCTCAC  96
      |||||||| | ||||||  |||| ||||||||||||||||||  | ||||
seq2  AAACGCAGGCTGAGCTCTGGCTGTTCAGCTGAGAGTGTGCGTTCCTTCAC  98

seq1  GTGCACTGCCCGGGGGCAGAGTCGGCACCTTTGTGGTGCCCAAGCCCAGT  146
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GTGCACTG-CCGGGGGCAGAGTCGGCACCTTTGTGGTG-CCAAGCCCAGT  146

seq1  TGCCATCACAAGCACCTTCCCC-TCGGTCTTGCATCAG-AATTTTGGCAG  194
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TGCCATCACAAGCACCTTCCCCTTCGGTCTTGCATCAGAAATTTTGGCAG  196

seq1  TAGGCTGTCCCATCAGACCTTGCTTTTATTAAATCTCAGAGCTTTGCCTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTCCCATCAGACCTTGCTTTTATTAAATCTCAGAGCTTTGCCTT  246

seq1  TTTGGATACTGTTTCAGAAGCGTCCTCTGTTTCGTCCCACATCCTTTCGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATACTGTTTCAGAAGCGTCCTCTGTTTCGTCCCACATCCTTTCGA  296

seq1  ATCTGAATTTCATTAGCTGCTCCCAGCAGCACTGGACACCACCGAGTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTTCATTAGCTGCTCCCAGCAGCACTGGACACCACCGAGTCTC  346

seq1  TCTGTTTCATATATCATCTCAGATTTGAAAAGCACAGGAAAATGTTTCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCATATATCATCTCAGATTTGAAAAGCACAGGAAAATGTTTCTC  396

seq1  CATTTTCAATATTGCGTGAGTAATGTTCCCATTGAAAAGTAATGGAGTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAATATTGCGTGAGTAATGTTCCCATTGAAAAGTAATGGAGTGA  446

seq1  AGTTGTCACTTGTCAGCACTGTTATTAAGGAGGACGAGTCTCAGATCTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCACTTGTCAGCACTGTTATTAAGGAGGACGAGTCTCAGATCTTT  496

seq1  CTCTCATAATAAAATAAATCTGTCAGACAATCACCGTGCTTACATTTGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAATAAAATAAATCTGTCAGACAATCACCGTGCTTACATTTGCT  546

seq1  CATGCCAGCAGACGACGAGACGTGGACGGTGGCTGGCGCTCCTGCAGCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGCAGACGACGAGACGTGGACGGTGGCTGGCGCTCCTGCAGCTT  596

seq1  TCGTTCCCCAGGTGCCCTCCTCCCGACACCTGCCAGCCCAGCCACTGGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCCCAGGTGCCCTCCTCCCGACACCTGCCAGCCCAGCCACTGGGC  646

seq1  AGTTCACGTAGCGTCAACAATCCTTCCGAGATAATTGGCTCAGGAGTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACGTAGCGTCAACAATCCTTCCGAGATAATTGGCTCAGGAGTCTG  696

seq1  GCAAACAGACCGTTGCTCATTGCTCCCCGAATATTGACATTTTGTCAAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGACCGTTGCTCATTGCTCCCCGAATATTGACATTTTGTCAAAA  746

seq1  AGAGATTTTCAGTTTTTGCCTCTGTTATCTTTCCGTTGCACAGTAGACTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTTCAGTTTTTGCCTCTGTTATCTTTCCGTTGCACAGTAGACTG  796

seq1  CTTTAACTTTGAAATCAGTTTTCTAACCGGCCAGAAGTAATAAAAGGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTTTGAAATCAGTTTTCTAACCGGCCAGAAGTAATAAAAGGAAG  846

seq1  CATTGCTTGCCGCTTAAGACGACGCATGGTGGTACACCAGTGAGCCACAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTGCCGCTTAAGACGACGCATGGTGGTACACCAGTGAGCCACAC  896

seq1  CGCTGCGTGGCTAATAGACTTTTTAAATCATCCAGACATTAATTTAGTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCGTGGCTAATAGACTTTTTAAATCATCCAGACATTAATTTAGTCC  946

seq1  ACACAGTACTGTAGAGGGGCTTCCAGATAACCTTCGAGGGGCCCCTCTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTACTGTAGAGGGGCTTCCAGATAACCTTCGAGGGGCCCCTCTCT  996

seq1  CCTCAGCTATGCTCACTGCAGCTCTAGAATGTGTTTTCTCGTTGGGCGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTATGCTCACTGCAGCTCTAGAATGTGTTTTCTCGTTGGGCGTT  1046

seq1  GCTTTCCTGGACGGTCCATTGGTTTCTAGTAATTGCATTTTGAACTCTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTGGACGGTCCATTGGTTTCTAGTAATTGCATTTTGAACTCTTT  1096

seq1  AAAAAAGAATTAAAAGATAATTCCGCAGTAGAAAAGTCAGGGGGAAAGTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATTAAAAGATAATTCCGCAGTAGAAAAGTCAGGGGGAAAGTT  1146

seq1  TAGAGAATTC  1154
      ||||||||||
seq2  TAGAGAATTC  1156

seq1: chr1_91445617_91446633
seq2: B6Ng01-290G20.g_63_1098

seq1  GAATTCTAGCCATCCTTTACTGAGCGAAGAAGGTGCAGGTCCAGTAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCATCCTTTACTGAGCGAAGAAGGTGCAGGTCCAGTAGGAC  50

seq1  ACGGGAACAAAGAGCCCACAGTGTGGCAGTTGGTCGGTGAGTAGGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAACAAAGAGCCCACAGTGTGGCAGTTGGTCGGTGAGTAGGGAGAG  100

seq1  GACAGATCCAGTGTCCAGCATACGTGGGTCAACCACCATGTTGGGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCCAGTGTCCAGCATACGTGGGTCAACCACCATGTTGGGAACTA  150

seq1  CTGCCCTGTGTCTGCGGCTCTTCTCCTGAAGAGCAGGGAGATTCTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTCTGCGGCTCTTCTCCTGAAGAGCAGGGAGATTCTGTTGG  200

seq1  AGCAGAGAGTGCCAGCAGTGTCCTTAGATGAGCAGAGGGAGTGTAGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGTGCCAGCAGTGTCCTTAGATGAGCAGAGGGAGTGTAGGTGC  250

seq1  AGTGGTGAGACAGAAAGAAGGGACTCGTCACTTCTAGGACACTTGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGACAGAAAGAAGGGACTCGTCACTTCTAGGACACTTGCTTGG  300

seq1  CAGGAAGGAAGCTGGGTGGAAGGGCTGGCTAAAGAGCAAGTGGGTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAAGCTGGGTGGAAGGGCTGGCTAAAGAGCAAGTGGGTGGAGT  350

seq1  TGTGTTGTTCAGGGAGGAAAGAGTAAGCTGGGATCTTCAAAGGAAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTTCAGGGAGGAAAGAGTAAGCTGGGATCTTCAAAGGAAGGTGG  400

seq1  ACAGGACTGCTGGGTCTCAGACGACCTGTCTCTTACATTAGATACAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGCTGGGTCTCAGACGACCTGTCTCTTACATTAGATACAACAT  450

seq1  GGCTGGCTTTGTGGAGAATGAGGAAGACAGTGGGCTGTAGGGATGGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTTGTGGAGAATGAGGAAGACAGTGGGCTGTAGGGATGGTCTT  500

seq1  GACTGGGGAGGAGAGAAGGGCAGAGGAACATTGGCTGGCAGTGTCCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGAGGAGAGAAGGGCAGAGGAACATTGGCTGGCAGTGTCCAGTT  550

seq1  TACATGGGGACCACATAGGGCTTTTACGAGTTAGAAATGACTGACCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGGACCACATAGGGCTTTTACGAGTTAGAAATGACTGACCATCT  600

seq1  GACATGGCTGACTTCATGAGTGACCCTTACTCAAGGGAATTTTATGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCTGACTTCATGAGTGACCCTTACTCAAGGGAATTTTATGCCTT  650

seq1  GTTAAAGCAAGATAGCAACCGCATCACTCCATGTCACTGACCGTTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCAAGATAGCAACCGCATCACTCCATGTCACTGACCGTTTTACA  700

seq1  TTTCATTTTTCTAGCCTTATGGTCGTGGCATGAACTTGAGACTTCAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTCTAGCCTTATGGTCGTGGCATGAACTTGAGACTTCAAAAT  750

seq1  ACAGTTATATGAAAAATATTTCTGCTAAACAAAACACGTGTCGAAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATATGAAAAATATTTCTGCTAAACAAAACACGTGTCGAAGAGAA  800

seq1  AGTTATTTTTTAGAAGCCCACAGACTTATCACATAGCCCTTGTA-TTTTT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTATTTTTTAGAAGCCCACAGACTTATCACATAGCCCTTGTATTTTTT  850

seq1  TATTTTCTGGTGGGATTCTTCCCCCACA-TTTCTCTGTATATCA-TTGAA  897
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TATTTTCTGGTGGGATTCTTCCCCCACATTTTCTCTGTATATCATTTGAA  900

seq1  AAGATGTTCAA-GATAGGGTTCTATAGCCTTACTGCATAAA--CATTTCC  944
      ||||||||||| |||||||||||||||||||||||||||||   ||||||
seq2  AAGATGTTCAAGGATAGGGTTCTATAGCCTTACTGCATAAAACAATTTCC  950

seq1  CACA-GTGCGTTCTGGG--AAGTCCATGT--GGTCTCTAA-GTCA-TATT  987
      |||| ||||||||||||  | ||||||||  | ||||||| |||| ||||
seq2  CACAGGTGCGTTCTGGGGAAGGTCCATGTTGGTTCTCTAAGGTCATTATT  1000

seq1  --AGATACA-GGACTA--GGGGGTT-GGTCTGGGGA  1017
         |||||| ||||||  ||||||| ||||||||||
seq2  TAGGATACAGGGACTAAGGGGGGTTGGGTCTGGGGA  1036