BAC Information

Click to search

BAC

Clone NameB6Ng01-290L14
Chromosome1 (Build37)
Map Location 98,463,632 - 98,620,993
singlet/doubletdoublet
Overlap geneGm1833
Upstream geneSt8sia4
Downstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290L14.bB6Ng01-290L14.g
ACCGA087794GA087795
length1,124691
definitionB6Ng01-290L14.b B6Ng01-290L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,619,862 - 98,620,993)(98,463,632 - 98,464,316)
sequence
gaattctttaacatgcatactctgtaattaccttgcatataatgaactgt
aatttatactagccttatgtttgaatttcttatattttaattattctctt
gaatattacatcccaaccacagattcccctcccacctctcctctcaatcc
ctcctcccaatatcctccctccccatcctgtcaaattcccttcagtggac
tatccgtgatagcctggaactgagaagtggtggaagcatgcctacaacca
tggatttccttatcctgagagcattagcagtttgcctgctcccctgaggg
atgataatggcccaggattatggagaaagtgttgcaggaacttcaacccc
agatacctccaacttaaggacaacagtagttggctacttccctcctccta
gctcaacaccatgaagcccaatggtgtgaaaaacggagagctggttcacc
cacctaccatctgtagcacttgtgaaagtgggaccagtacctcaccatct
tccctagcagtattttatcaccttgacagctgttaggtctaactctttgt
taggccttataggttcctacttttacagtccctgagtttgtaaatgaagc
atcttccaacacccctgaccaggccaatggtacatggccacagaaacctt
atcttcagagactctggccacctctccagcggcataaatacccatttccc
ccctaaaaaaccaaaccaggtccccaaacctgtttctgtatgtgatcttt
ccccatttactcatcacccaccgaggtcatgcgctgaacccatctgtggc
cagctatacttcactccctccagtctacattgttgctcaattgctacccc
tagagagaagcaggtttggggtagcactcccccatttgctctggcatcaa
gagtcctcagcagataggcttcttttggtgaaagcatgcccctgtgaatg
tagtaatgaataaagtccttaagtgcaggttatcatggctggtttgtcaa
ctggaatctgaaatatctcagctggctaccttccatatgcctttaaagtc
tgtccttggttctgctgctctgaatatgcaaatgaatcattctgaatgat
cttccccagccagtacatatgatc

gaattcactcctactgttctctccctctcagaccccaccccctccactct
gtccatttctctgtctctctgtctgcctgactttctgtttttctgtctct
ctctgtatctctctctgtgtgtctttgtccccctctttctctccctccct
tcttccctttctctccctccctaccctgccctgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgagacacatgtgtatttatctttaggaatttgttgtgt
tctgtatgcagagaatttaccttattttttctgccacattgcagccattg
ccctggaagcttgtttgggggaagagatgatggggtttaatgtgctcact
cagtgggttagatactttccaaatatttttatcatttcttccgattctac
tgcactattccaaatctattatttaatcataatagatatgtgtaataata
aattatttacacataatagatacacatatttttacaacccatataacttt
cttgattactgttgagtttgataatatttttttaaatagtaaagaagggc
attgcagagaatagtaactttttttttttcttagatgggaggttttcaga
aatttgttgtgacatttttgccacaaacatgaacaagcccctgcctgtga
ctcacacactgcagtaatcattctttctctggtctggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98619862_98620993
seq2: B6Ng01-290L14.b_44_1167 (reverse)

seq1  GATCATATGTTACTGGCTGGGGAAAGACCATTCAGGATGATTCATTTGCA  50
      ||||||||| |||||||||||| |||| ||||||| ||||||||||||||
seq2  GATCATATG-TACTGGCTGGGG-AAGATCATTCAGAATGATTCATTTGCA  48

seq1  TATTCAGGAGCAGCAGGAACCAAGGGACAGAACCTTTTAAGGGCATATGG  100
      |||||| |||||||| ||||||| |||||||    ||||| |||||||||
seq2  TATTCA-GAGCAGCA-GAACCAA-GGACAGA---CTTTAAAGGCATATGG  92

seq1  AAAGGTAGCCCAGCCTGAGATATTTCAGA-TCCAG-TGAC-AACCAGCCA  147
       ||||||| |||| ||||||||||||||| ||||| |||| |||||||||
seq2  -AAGGTAG-CCAG-CTGAGATATTTCAGATTCCAGTTGACAAACCAGCCA  139

seq1  TGATAACCCTGCACTT-AGGACCTTATTCATTACTACATTCACAGGGGCA  196
      |||||| ||||||||| ||||| |||||||||||||||||||||||||||
seq2  TGATAA-CCTGCACTTAAGGACTTTATTCATTACTACATTCACAGGGGCA  188

seq1  TGCTTTCACCAAAAGAAGCCTATCTGCTGAGGACTCTTGATGCCAGAGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACCAAAAGAAGCCTATCTGCTGAGGACTCTTGATGCCAGAGCA  238

seq1  AATGGGGGAGTGCTACCCCAAACCTGCTTCTCTCTAGGGGTAGCAATTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGAGTGCTACCCCAAACCTGCTTCTCTCTAGGGGTAGCAATTGA  288

seq1  GCAACAATGTAGACTGGAGGGAGTGAAGTATAGCTGGCCACAGATGGGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATGTAGACTGGAGGGAGTGAAGTATAGCTGGCCACAGATGGGTT  338

seq1  CAGCGCATGACCTCGGTGGGTGATGAGTAAATGGGGAAAGATCACATACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCATGACCTCGGTGGGTGATGAGTAAATGGGGAAAGATCACATACA  388

seq1  GAAACAGGTTTGGGGACCTGGTTTGGTTTTTTAGGGGGGAAATGGGTATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTTTGGGGACCTGGTTTGGTTTTTTAGGGGGGAAATGGGTATT  438

seq1  TATGCCGCTGGAGAGGTGGCCAGAGTCTCTGAAGATAAGGTTTCTGTGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCGCTGGAGAGGTGGCCAGAGTCTCTGAAGATAAGGTTTCTGTGGC  488

seq1  CATGTACCATTGGCCTGGTCAGGGGTGTTGGAAGATGCTTCATTTACAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCATTGGCCTGGTCAGGGGTGTTGGAAGATGCTTCATTTACAAA  538

seq1  CTCAGGGACTGTAAAAGTAGGAACCTATAAGGCCTAACAAAGAGTTAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACTGTAAAAGTAGGAACCTATAAGGCCTAACAAAGAGTTAGAC  588

seq1  CTAACAGCTGTCAAGGTGATAAAATACTGCTAGGGAAGATGGTGAGGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCTGTCAAGGTGATAAAATACTGCTAGGGAAGATGGTGAGGTAC  638

seq1  TGGTCCCACTTTCACAAGTGCTACAGATGGTAGGTGGGTGAACCAGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCACTTTCACAAGTGCTACAGATGGTAGGTGGGTGAACCAGCTCT  688

seq1  CCGTTTTTCACACCATTGGGCTTCATGGTGTTGAGCTAGGAGGAGGGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTTCACACCATTGGGCTTCATGGTGTTGAGCTAGGAGGAGGGAAG  738

seq1  TAGCCAACTACTGTTGTCCTTAAGTTGGAGGTATCTGGGGTTGAAGTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACTACTGTTGTCCTTAAGTTGGAGGTATCTGGGGTTGAAGTTCC  788

seq1  TGCAACACTTTCTCCATAATCCTGGGCCATTATCATCCCTCAGGGGAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACACTTTCTCCATAATCCTGGGCCATTATCATCCCTCAGGGGAGCA  838

seq1  GGCAAACTGCTAATGCTCTCAGGATAAGGAAATCCATGGTTGTAGGCATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTGCTAATGCTCTCAGGATAAGGAAATCCATGGTTGTAGGCATG  888

seq1  CTTCCACCACTTCTCAGTTCCAGGCTATCACGGATAGTCCACTGAAGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCACTTCTCAGTTCCAGGCTATCACGGATAGTCCACTGAAGGGA  938

seq1  ATTTGACAGGATGGGGAGGGAGGATATTGGGAGGAGGGATTGAGAGGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAGGATGGGGAGGGAGGATATTGGGAGGAGGGATTGAGAGGAGA  988

seq1  GGTGGGAGGGGAATCTGTGGTTGGGATGTAATATTCAAGAGAATAATTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGGGAATCTGTGGTTGGGATGTAATATTCAAGAGAATAATTAA  1038

seq1  AATATAAGAAATTCAAACATAAGGCTAGTATAAATTACAGTTCATTATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGAAATTCAAACATAAGGCTAGTATAAATTACAGTTCATTATAT  1088

seq1  GCAAGGTAATTACAGAGTATGCATGTTAAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTAATTACAGAGTATGCATGTTAAAGAATTC  1124


seq1: chr1_98463632_98464316
seq2: B6Ng01-290L14.g_67_757

seq1  GAATTCACTCCTACTGTTCTCTCCCTCTCAGACCCCACCCCCTCCACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTACTGTTCTCTCCCTCTCAGACCCCACCCCCTCCACTCT  50

seq1  GTCCATTTCTCTGTCTCTCTGTCTGCCTGACTTTCTGTTTTTCTGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTCTCTGTCTCTCTGTCTGCCTGACTTTCTGTTTTTCTGTCTCT  100

seq1  CTCTGTATCTCTCTCTGTGTGTCTTTGTCCCCCTCTTTCTCTCCCTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATCTCTCTCTGTGTGTCTTTGTCCCCCTCTTTCTCTCCCTCCCT  150

seq1  TCTTCCCTTTCTCTCCCTCCCTACCCTGCCCTGTGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTTCTCTCCCTCCCTACCCTGCCCTGTGTGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGAGACACATGTGTATTTATCTTTAGGAATTTGTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGAGACACATGTGTATTTATCTTTAGGAATTTGTTGTGT  250

seq1  TCTGTATGCAGAGAATTTACCTTATTTTTTCTGCCACATTGCAGCCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGCAGAGAATTTACCTTATTTTTTCTGCCACATTGCAGCCATTG  300

seq1  CCCTGGAAGCTTGTTTGGGGGAAGAGATGATGGGGTTTAATGTGCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAGCTTGTTTGGGGGAAGAGATGATGGGGTTTAATGTGCTCACT  350

seq1  CAGTGGGTTAGATACTTTCCAAATATTTTTATCATTTCTTCCGATTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTTAGATACTTTCCAAATATTTTTATCATTTCTTCCGATTCTAC  400

seq1  TGCACTATTCCAAATCTATTATTTAATCATAATAGATATGTGTAATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATTCCAAATCTATTATTTAATCATAATAGATATGTGTAATAATA  450

seq1  AATTATTTACACATAATAGATACACATATTTTTACAACCCATATAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTACACATAATAGATACACATATTTTTACAACCCATATAACTTT  500

seq1  CTTGATTACTGTTGAGTTTGATAATATTTTTTTAAATAGTAAAGAAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTACTGTTGAGTTTGATAATATTTTTTTAAATAGTAAAGAAGGGC  550

seq1  ATTGCAGAGAATAGTAAC--TTTTTTTTTCTTAGATGGGAGGTTTTCAGA  598
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ATTGCAGAGAATAGTAACTTTTTTTTTTTCTTAGATGGGAGGTTTTCAGA  600

seq1  AATTTGTTGTGACA-TTTTGCCAC-AACATGAACAAGCCCCTGCCTGTGA  646
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AATTTGTTGTGACATTTTTGCCACAAACATGAACAAGCCCCTGCCTGTGA  650

seq1  CTCACACACTGCAGTAA-CATTCTTTCTCT-GTCTGGAAGA  685
      ||||||||||||||||| |||||||||||| ||||||||||
seq2  CTCACACACTGCAGTAATCATTCTTTCTCTGGTCTGGAAGA  691


| Home | SequenceCutter | Blast | Download |