BAC Information

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BAC

Clone NameB6Ng01-293H24
Chromosome1 (Build37)
Map Location 66,588,977 - 66,634,891
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293H24.bB6Ng01-293H24.g
ACCGA089864GA089865
length1,0041,106
definitionB6Ng01-293H24.b B6Ng01-293H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,588,977 - 66,589,981)(66,633,781 - 66,634,891)
sequence
gaattcagtctataaggctgtcatttgagaattgacctttccaagtgaag
gccaacattatgtctttggagccaatgatacaaacatcaagaacctatca
ccatattgaagtcccataatgtattcagctgtcttcccagatttagatat
taaaattatatccactgttcaacattggccactcataccttctcagtctt
agagcatggcctcatccgtccatcttttccttgatattacttcttagaaa
ttgaatttctcagtgtaaggggttgatacagacttccagaaatgaatctt
gttgcatagaatatatataccaaaatattttatctctccaaaggtagtgt
ggtggagcactgctttctccttcaaagcaccttaatttctactaatttag
tgagtgaaaaatgggaacttttagcttactattattgttattcctgtata
ttattagtcacattttctcattgaaaatcttcttttgggttttctgatat
ttctttttttttttttttgaaaatctttttttttttaattaggtattttt
ttcatttacatttccaatgctgtcccaaaagtcccccataccctcccctc
cactcccctacccacccactcccactttttggccctggtgttcccgtata
ctgaggcatataaagtttgcaagaccaatgggcctctctttccaatgatg
gccgactaggccatcttctgatacatatgcagctagagacaagaactcca
gggtactggttagttcataatgttgttccacctatagggttgcagatccc
tttagcttctttggtactttctctagctccttcattgggggccatgtgat
ccatccaatagccgactgtgagcatccacttctatgtttgctaggcccag
gcatactctgacagagacagctatattcagggtcttttcagcataatctt
gctagtgtatgcaatgtgtcagcatttggaagctgattatgggatggatc
cctg

acatgtttgtctcctatccttttccttactacactctgagtcttttgggg
aggtaagaacatgttgagtggcacatttactggttcagaagatacacaac
catgtatctcattattacagacttagagcagctgatgtgttggctgactg
aaaatggagctagatgttcacttaaaagaaactaaaagtttctatgattt
tggaactataccaggcattcagggactcaccgagaaatcattgaagaaca
actttttttttttttttaaatggagaaaatacacaggcaggatggaaagg
tatctgaggaccgggtagcctaatgaaccattggaattagagggtcattg
ggctttctgctgaagaaggtaaaatataaagcatgacttcaacatttata
gaagtctactacttatataaatttatattttatatattattaattatata
atataatcatagcattgaatattaaaatatataacacaataatatttaag
ttataaggtaaatttatattatggaagtttaagttaaatagttttatgtt
atgagctaaatcaaattcatcacccataatcctatttaactcaagggaaa
gggggagggggcattaagataattttcttctcaccaaacagccagagttt
atagaatgagtcacaggggccaaagctagaggttgggagcccagtatgaa
ctttctgtttcagatagattgtgtccaatggacaggaccttaccggcagt
atacaagatggattataaggcatgaggatgagagacaatggaaaataatc
atctaaattgaagtaaagaagctctgacctatgagacattgattaggaaa
aggtaggatcagcagagagagatttgggaatgtgctaaatagcacacgtg
tcaattgctggtagtaccactaatgtaagccaaaatcttagacatgtttg
cagatgagtgtgcatttaggaagaagtgtttttattttgttcaactattt
ttgtttggagatatagagaaatgcttcagatgacttgcatgcagactggg
atggaaacttctctggacggaacatcctgtgctaggttccttcacatcca
gcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66588977_66589981
seq2: B6Ng01-293H24.b_48_1051

seq1  GAATTCAGTCTATAAGGCTGTCATTTGAGAATTGACCTTTCCAAGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTATAAGGCTGTCATTTGAGAATTGACCTTTCCAAGTGAAG  50

seq1  GCCAACATTATGTCTTTGGAGCCAATGATACAAACATCAAGAACCTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTATGTCTTTGGAGCCAATGATACAAACATCAAGAACCTATCA  100

seq1  CCATATTGAAGTCCCATAATGTATTCAGCTGTCTTCCCAGATTTAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGAAGTCCCATAATGTATTCAGCTGTCTTCCCAGATTTAGATAT  150

seq1  TAAAATTATATCCACTGTTCAACATTGGCCACTCATACCTTCTCAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATATCCACTGTTCAACATTGGCCACTCATACCTTCTCAGTCTT  200

seq1  AGAGCATGGCCTCATCCGTCCATCTTTTCCTTGATATTACTTCTTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGGCCTCATCCGTCCATCTTTTCCTTGATATTACTTCTTAGAAA  250

seq1  TTGAATTTCTCAGTGTAAGGGGTTGATACAGACTTCCAGAAATGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTCTCAGTGTAAGGGGTTGATACAGACTTCCAGAAATGAATCTT  300

seq1  GTTGCATAGAATATATATACCAAAATATTTTATCTCTCCAAAGGTAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAGAATATATATACCAAAATATTTTATCTCTCCAAAGGTAGTGT  350

seq1  GGTGGAGCACTGCTTTCTCCTTCAAAGCACCTTAATTTCTACTAATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCACTGCTTTCTCCTTCAAAGCACCTTAATTTCTACTAATTTAG  400

seq1  TGAGTGAAAAATGGGAACTTTTAGCTTACTATTATTGTTATTCCTGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAAAATGGGAACTTTTAGCTTACTATTATTGTTATTCCTGTATA  450

seq1  TTATTAGTCACATTTTCTCATTGAAAATCTTCTTTTGGGTTTTCTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTCACATTTTCTCATTGAAAATCTTCTTTTGGGTTTTCTGATAT  500

seq1  TTCTTTTTTTTTTTTTTTGAAAATCTTTTTTTTTTTAATTAGGTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTTTTTTGAAAATCTTTTTTTTTTTAATTAGGTATTTTT  550

seq1  TTCATTTACATTTCCAATGCTGTCCCAAAAGTCCCCCATACCCTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACATTTCCAATGCTGTCCCAAAAGTCCCCCATACCCTCCCCTC  600

seq1  CACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGTGTTCCCGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGTGTTCCCGTATA  650

seq1  CTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATG  700

seq1  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAAGAACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAAGAACTCCA  750

seq1  GGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCC  800

seq1  TTTAGCTTCTTTGGTACTTTCTCTAGCTCCTTCATTGGGGGCCATGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTCTTTGGTACTTTCTCTAGCTCCTTCATTGGGGGCCATGTGAT  850

seq1  CCATCCAATAGCCGACTGTGAGCATCCACTTCTATGTTTGCTAGGCCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATAGCCGACTGTGAGCATCCACTTCTATGTTTGCTAGGCCCAG  900

seq1  GCATACTCTGACAAGAGACAGCTATA-TCAGGGTCTTTTCAGCATAATCT  949
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GCATACTCTGAC-AGAGACAGCTATATTCAGGGTCTTTTCAGCATAATCT  949

seq1  TGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGGA  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTAGTGTATGCAAT-GTGTCAGCATTTGGAAGCTGATTATGGGATGGA  998

seq1  TCCCCG  1005
      |||| |
seq2  TCCCTG  1004


seq1: chr1_66633781_66634891
seq2: B6Ng01-293H24.g_74_1179 (reverse)

seq1  CAGTGCTTGATGTG-AGGAA-CTAGCACAGAATGTTCTGTCCAGAGAAGT  48
      ||||||| |||||| ||||| ||||||||| |||||| ||||||||||||
seq2  CAGTGCTGGATGTGAAGGAACCTAGCACAGGATGTTCCGTCCAGAGAAGT  50

seq1  TTTCAAACCCCAGGTCTGCATTGCCAAGTTCATCTTGAAGGCATTTTCTC  98
      || |  | |||| ||||||||   |||| ||||| |||| ||| ||||||
seq2  TTCC--ATCCCA-GTCTGCAT--GCAAG-TCATC-TGAA-GCA-TTTCTC  91

seq1  TATATCTCCAAAC-AAAATAGTTTGAACAAAAT-AAAACACTTCTTCCTA  146
      ||||||||||||| ||||||| ||||||||||| ||||||||||||||||
seq2  TATATCTCCAAACAAAAATAG-TTGAACAAAATAAAAACACTTCTTCCTA  140

seq1  AATGCACACTCATCTGCAAACATGTCTAAGATTTTGGCTTACATTAGTGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACTCATCTGCAAACATGTCTAAGATTTTGGCTTACATTAGTGG  190

seq1  TACTACCAGCAATTGACACGTGTGCTATTTAGCACATT-CCAAATCTCTC  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACTACCAGCAATTGACACGTGTGCTATTTAGCACATTCCCAAATCTCTC  240

seq1  TCTGCTGATCCTACCTTTTCCTAATCAATGTCTCATAGGTCAGAGCTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATCCTACCTTTTCCTAATCAATGTCTCATAGGTCAGAGCTTCT  290

seq1  TTACTTCAATTTAGATGATTATTTTCCATTGTCTCTCATCCTCATGCCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAATTTAGATGATTATTTTCCATTGTCTCTCATCCTCATGCCTT  340

seq1  ATAATCCATCTTGTATACTGCCGGTAAGGTCCTGTCCATTGGACACAATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCATCTTGTATACTGCCGGTAAGGTCCTGTCCATTGGACACAATC  390

seq1  TATCTGAAACAGAAAGTTCATACTGGGCTCCCAACCTCTAGCTTTGGCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAACAGAAAGTTCATACTGGGCTCCCAACCTCTAGCTTTGGCCC  440

seq1  CTGTGACTCATTCTATAAACTCTGGCTGTTTGGTGAGAAGAAAATTATCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTCATTCTATAAACTCTGGCTGTTTGGTGAGAAGAAAATTATCT  490

seq1  TAATGCCCCCTCCCCCTTTCCCTTGAGTTAAATAGGATTATGGGTGATGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCCCCTCCCCCTTTCCCTTGAGTTAAATAGGATTATGGGTGATGA  540

seq1  ATTTGATTTAGCTCATAACATAAAACTATTTAACTTAAACTTCCATAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTAGCTCATAACATAAAACTATTTAACTTAAACTTCCATAATA  590

seq1  TAAATTTACCTTATAACTTAAATATTATTGTGTTATATATTTTAATATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTACCTTATAACTTAAATATTATTGTGTTATATATTTTAATATTC  640

seq1  AATGCTATGATTATATTATATAATTAATAATATATAAAATATAAATTTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATGATTATATTATATAATTAATAATATATAAAATATAAATTTAT  690

seq1  ATAAGTAGTAGACTTCTATAAATGTTGAAGTCATGCTTTATATTTTACCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGTAGACTTCTATAAATGTTGAAGTCATGCTTTATATTTTACCT  740

seq1  TCTTCAGCAGAAAGCCCAATGACCCTCTAATTCCAATGGTTCATTAGGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCAGAAAGCCCAATGACCCTCTAATTCCAATGGTTCATTAGGCT  790

seq1  ACCCGGTCCTCAGATACCTTTCCATCCTGCCTGTGTATTTTCTCCATTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGTCCTCAGATACCTTTCCATCCTGCCTGTGTATTTTCTCCATTTA  840

seq1  AAAAAAAAAAAAAAGTTGTTCTTCAATGATTTCTCGGTGAGTCCCTGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGTTGTTCTTCAATGATTTCTCGGTGAGTCCCTGAAT  890

seq1  GCCTGGTATAGTTCCAAAATCATAGAAACTTTTAGTTTCTTTTAAGTGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATAGTTCCAAAATCATAGAAACTTTTAGTTTCTTTTAAGTGAA  940

seq1  CATCTAGCTCCATTTTCAGTCAGCCAACACATCAGCTGCTCTAAGTCTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTCCATTTTCAGTCAGCCAACACATCAGCTGCTCTAAGTCTGT  990

seq1  AATAATGAGATACATGGTTGTGTATCTTCTGAACCAGTAAATGTGCCACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGATACATGGTTGTGTATCTTCTGAACCAGTAAATGTGCCACT  1040

seq1  CAACATGTTCTTACCTCCCCAAAAGACTCAGAGTGTAGTAAGGAAAAGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTTCTTACCTCCCCAAAAGACTCAGAGTGTAGTAAGGAAAAGGA  1090

seq1  TAGGAGACAAACATGT  1111
      ||||||||||||||||
seq2  TAGGAGACAAACATGT  1106


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