BAC Information

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BAC

Clone NameB6Ng01-293J21
Chromosome1 (Build37)
Map Location 150,599,256 - 150,741,629
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293J21.bB6Ng01-293J21.g
ACCGA089954GA089955
length1,138743
definitionB6Ng01-293J21.b B6Ng01-293J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,599,256 - 150,600,387)(150,740,501 - 150,741,629)
sequence
gaattcaagtgctgtgactgaactcaattgaactgtgcccattaaattat
tatctctctatagatagatagatagatagatagatagatagatagataga
tagatagatagatgtctgcactgttctcttaattcacctctctttcctgt
gccagtctcttaaatagcctctcatttctatgaagtcctcttgagagtga
ccatgtcaaatctttctctgattcatcactttgtgtgcctatcaattaga
cttcactttcaaacacagttgtttctgtaactaaaggtgggcactaaagc
agcatctgtattccagctggttcacacagacctagaaggtctttgttgct
gatcccttgccatagtaaccatgttatattgattgattaaaattctagta
tatttacacagatatataagtacacatttacaaattcaaaataaaattaa
tgaaaatttgagatccctctcatttgaaaacataaataaataaatgttag
actatttagaataaaaataataattttctataatatagcaatatattata
aaagaatatagaatattctatactatagaatataagaatattgggaaaaa
ttaaagaaaagaatatataatgaaaaaagaagaatatagttcttggttga
gagagttattgaaagtttttaattattccttcttcagaaatggccactat
tgtagaatgttatcttgctcaagtcacacattgccacatctattgaatgt
tcccatatctttgaggctcttcctcactttctcctctataattttcagtg
tctcttgttttatgtggagttccttgatctttgtacaaggagatgagaat
ggatcaatttgcattcttctacatgctaaccaccagtcgagccagcacca
tttgttgaaaaggctgtcttttttccactgaatggttttagctcatttgt
caaagtgatcataggtgtggtgggttcattttctggttcttcaatactat
tccattgatctacctgcctggtcactgtaccagcaccatgcagtttttta
tcacattgctctgtagttgcagcttggaggtcaggatgggtgatttcatc
cagaggttcttttttattgttgagatagttttcatcat
gaattctgtgtgaatcagatcattctttctagataagcatggtgcccgtg
cacaacctatctttgaattctcacctgaacttctttgaggtcagtgtcat
gaatgcttaggtaagtgtcatctatactttctgtttggttcactagcctg
agtccctacttttgagatttaatttcaggggaaaaaagggggggggggga
aatcttagcagttgttactttcaatgtttcttctgactcttcctttactc
tattgttccacaagtgaataggggtctacacttattaacatttccccagc
attctggcatgtttttctgttttcctcattactgatgctctgtaaagtta
atttataaagtttcaattatatatcttcaaatctacatgttatattcttt
cttgtgattgaccttctgagaacccagtaagacttattcctaggtaaaat
gggaaagttatagttcaccagtattgccaattgacctccattaattcaca
tgggagttggtaaattgtttatggatagtaggactatatgagaaattctc
tcagcatgttcagaaatgataattttccttgaagaaaagcctgagatatt
tattgagatttgttcacatatttggtacatgttgggttattctagggatg
ctgtccaaaaaagacccagtgggactttcctataatgctcaaagtgggtg
atacagtaagactttcatctagtgaaaatacttgaaacatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150599256_150600387
seq2: B6Ng01-293J21.b_45_1182

seq1  GAATTCAAGTGCTGTGACTGAACTCAATTGAACTGTGCCCATTAAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGCTGTGACTGAACTCAATTGAACTGTGCCCATTAAATTAT  50

seq1  TATCTCTCTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100

seq1  TAGATAGATAGATGTCTGCACTGTTCTCTTAATTCACCTCTCTTTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATGTCTGCACTGTTCTCTTAATTCACCTCTCTTTCCTGT  150

seq1  GCCAGTCTCTTAAATAGCCTCTCATTTCTATGAAGTCCTCTTGAGAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTCTTAAATAGCCTCTCATTTCTATGAAGTCCTCTTGAGAGTGA  200

seq1  CCATGTCAAATCTTTCTCTGATTCATCACTTTGTGTGCCTATCAATTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCAAATCTTTCTCTGATTCATCACTTTGTGTGCCTATCAATTAGA  250

seq1  CTTCACTTTCAAACACAGTTGTTTCTGTAACTAAAGGTGGGCACTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTCAAACACAGTTGTTTCTGTAACTAAAGGTGGGCACTAAAGC  300

seq1  AGCATCTGTATTCCAGCTGGTTCACACAGACCTAGAAGGTCTTTGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGTATTCCAGCTGGTTCACACAGACCTAGAAGGTCTTTGTTGCT  350

seq1  GATCCCTTGCCATAGTAACCATGTTATATTGATTGATTAAAATTCTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTGCCATAGTAACCATGTTATATTGATTGATTAAAATTCTAGTA  400

seq1  TATTTACACAGATATATAAGTACACATTTACAAATTCAAAATAAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACACAGATATATAAGTACACATTTACAAATTCAAAATAAAATTAA  450

seq1  TGAAAATTTGAGATCCCTCTCATTTGAAAACATAAATAAATAAATGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTGAGATCCCTCTCATTTGAAAACATAAATAAATAAATGTTAG  500

seq1  ACTATTTAGAATAAAAATAATAATTTTCTATAATATAGCAATATATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAGAATAAAAATAATAATTTTCTATAATATAGCAATATATTATA  550

seq1  AAAGAATATAGAATATTCTATACTATAGAATATAAGAATATTGGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATAGAATATTCTATACTATAGAATATAAGAATATTGGGAAAAA  600

seq1  TTAAAGAAAAGAATATATAATGAAAAAAGAAGAATATAGTTCTTGGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAAGAATATATAATGAAAAAAGAAGAATATAGTTCTTGGTTGA  650

seq1  GAGAGTTATTGAAAGTTTTTAATTATTCCTTCTTCAGAAATGGCCACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTATTGAAAGTTTTTAATTATTCCTTCTTCAGAAATGGCCACTAT  700

seq1  TGTAGAATGTTATCTTGCTCAAGTCACACATTGCCACATCTATTGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATGTTATCTTGCTCAAGTCACACATTGCCACATCTATTGAATGT  750

seq1  TCCCATATCTTTGAGGCTCTTCCTCACTTTCTCCTCTATAATTTTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATCTTTGAGGCTCTTCCTCACTTTCTCCTCTATAATTTTCAGTG  800

seq1  TCTCTTGTTTTATGTGGAGTTCCTTGATCTTTGTACAAGGAGATGAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTTTATGTGGAGTTCCTTGATCTTTGTACAAGGAGATGAGAAT  850

seq1  GGATCAATTTGCATTCTTCTACATGCTAACCACCAGTCGAGCCAGCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATTTGCATTCTTCTACATGCTAACCACCAGTCGAGCCAGCACCA  900

seq1  TTTGTTGAAAAGGCTGTCTTTTTTCCACTGAATGGTTTTAGCTCATTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAAAGGCTGTCTTTTTTCCACTGAATGGTTTTAGCTCATTTGT  950

seq1  CAAAGTGATCATAGGTGT-GTGGGTTCA-TTTCTGGTTCTTCAATACTAT  998
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CAAAGTGATCATAGGTGTGGTGGGTTCATTTTCTGGTTCTTCAATACTAT  1000

seq1  TCCATTGATCTACCTGCCT-GTCACTGTACCAGCACCATGCAG-TTTTTA  1046
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TCCATTGATCTACCTGCCTGGTCACTGTACCAGCACCATGCAGTTTTTTA  1050

seq1  TCACATTTGCTCTGTAG-TGCAGCTT-GAGGTCAGGGATGGTGATTTCA-  1093
      ||||| ||||||||||| |||||||| |||||||||   |||||||||| 
seq2  TCACA-TTGCTCTGTAGTTGCAGCTTGGAGGTCAGGATGGGTGATTTCAT  1099

seq1  CCAGAGGTTC--TTTTATTGTTGAGAATAGTTTTTAATCAT  1132
      ||||||||||  ||||||||||||| |||| |||| |||||
seq2  CCAGAGGTTCTTTTTTATTGTTGAG-ATAG-TTTTCATCAT  1138

seq1: chr1_150740501_150741629
seq2: B6Ng01-293J21.g_66_808 (reverse)

seq1  AAAATGTGGGAAGCCGTTGCAGAGTGGCAGTTGCAGAGTGGCAGTTGGCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGCTGGCCCCCACACATACATAGGCAGTGAGGGTTCTTTTGCCCAGAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGACAAGTTAACCAATCAGATGTGAGACATGCCTCTCTTAGGCCTAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAGCAGCACCAGTTCTGGGCTCCGGGTCTTTTTGCCTCTACAATCAAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCCCAATAAACGTGTGCAGAAGGATCCTGTTTCAGCGTCCTTCTTCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCCAGTCTAGCGCGTGCAAGAAATAAACTGCCAATATAAATTAAAAAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTAAAAAGAATTATCTCACTGAATAGCTGGAGGCTGTGATAGATTAG  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGAGGATGTGAAACTCCTGTGGGGCCACTGAAAAGCTGAGTCCCAAAT  400
                                                    ||||
seq2  ---------------------------------------------AAAAT  5

seq1  G-TTCAAGTATTTTCACTAGATG-AAGTCTTACTGTATC-CCCACTTTGA  447
      | ||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  GTTTCAAGTATTTTCACTAGATGAAAGTCTTACTGTATCACCCACTTTGA  55

seq1  GCATTATA-GAAAGTCCCACTGGGTC-TTTTTGGACAGCAT-CCTAGAAT  494
      |||||||| ||||||||||||||||| |||||||||||||| ||||||||
seq2  GCATTATAGGAAAGTCCCACTGGGTCTTTTTTGGACAGCATCCCTAGAAT  105

seq1  AACCCAACATGTACC-AATATGTGAAC-AATCTCAATAAATATCTCAGGC  542
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  AACCCAACATGTACCAAATATGTGAACAAATCTCAATAAATATCTCAGGC  155

seq1  TTTTCTTCAAGGAAAATTATCATTTCTGAACATGCTGAGAGAATTTCTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAAGGAAAATTATCATTTCTGAACATGCTGAGAGAATTTCTCA  205

seq1  TATAGTCCTACTATCCATAAACAATTTACCAACTCCCATGTGAATTAATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCTACTATCCATAAACAATTTACCAACTCCCATGTGAATTAATG  255

seq1  GAGGTCAATTGGCAATACTGGTGAACTATAACTTTCCCATTTTACCTAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAATTGGCAATACTGGTGAACTATAACTTTCCCATTTTACCTAGG  305

seq1  AATAAGTCTTACTGGGTTCTCAGAAGGTCAATCACAAGAAAGAATATAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTTACTGGGTTCTCAGAAGGTCAATCACAAGAAAGAATATAAC  355

seq1  ATGTAGATTTGAAGATATATAATTGAAACTTTATAAATTAACTTTACAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTTGAAGATATATAATTGAAACTTTATAAATTAACTTTACAGA  405

seq1  GCATCAGTAATGAGGAAAACAGAAAAACATGCCAGAATGCTGGGGAAATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTAATGAGGAAAACAGAAAAACATGCCAGAATGCTGGGGAAATG  455

seq1  TTAATAAGTGTAGACCCCTATTCACTTGTGGAACAATAGAGTAAAGGAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGTGTAGACCCCTATTCACTTGTGGAACAATAGAGTAAAGGAAG  505

seq1  AGTCAGAAGAAACATTGAAAGTAACAACTGCTAAGATTT-CCCCCCCCCC  941
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTCAGAAGAAACATTGAAAGTAACAACTGCTAAGATTTCCCCCCCCCCC  555

seq1  CTTTTTTCCCCTGAAATTAAATCTCAAAAGTAGGGACTCAGGCTAGTGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCCCTGAAATTAAATCTCAAAAGTAGGGACTCAGGCTAGTGAA  605

seq1  CCAAACAGAAAGTATAGATGACACTTACCTAAGCATTCATGACACTGACC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGAAAGTATAGATGACACTTACCTAAGCATTCATGACACTGACC  655

seq1  TCAAAGAAGTTCAGGTGAGAATTCAAAGATAGGTTGTGCACGGGCACCAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGTTCAGGTGAGAATTCAAAGATAGGTTGTGCACGGGCACCAT  705

seq1  GCTTATCTAGAAAGAATGATCTGATTCACACAGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTAGAAAGAATGATCTGATTCACACAGAATTC  743