BAC Information

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BAC

Clone NameB6Ng01-293M11
Chromosome1 (Build37)
Map Location 191,017,732 - 191,196,605
singlet/doubletdoublet
Overlap geneKcnk2, LOC100042424, LOC100039307
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293M11.bB6Ng01-293M11.g
ACCGA090074GA090075
length1,2191,121
definitionB6Ng01-293M11.b B6Ng01-293M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,017,732 - 191,018,947)(191,195,512 - 191,196,605)
sequence
gaattcagtgcttgggggataatggatcatgagttaaagtcttttgatgt
gatggtggtatgctagactcatcggactgtctagtgagaaatgtatgaag
tctttaacataacgtatagagtctagagaagtggtttagtgggagaacac
atgcttgccgtgcatcaggccctgcatttaacctattgtaaaaacgtttt
aaaaatatatacaaaataagtattaaaagcattatataaaaaattagtgc
ctctgtctgctctggcagacctatttgacatgtagtttttactgagctat
tcatattcttccatatctttgttaattatttcgagcatatatgtgaaatg
tatttcaaaaatcctcatcctgtgtccatgaagtagaagaagctctttac
aaatgggcgcttttgtttgatcatgctcacagtgttctatcctagtaagc
agcccggtcctatcagggcttggtgagcagctctgtcctatcagggctca
gttagcagacccgtccaatcattcagggttctgtgagcagccctgtccta
tcagggctcggttagcagacccatccaatcaatcagggttcagtgagcag
ctctgtcctatcagggctcagttagcagacccgtccaatcattcagggtt
ctgtgagcagccctgtcctatcagggctcagtgagcagacccatccaatc
aatcagggttcagtgagcagctctgtcctatcagggctcagttagcagac
ccgtccaatcattcagggttcagtgagcagccctgtcctatcagggctca
gtgagcagaccctccaatcaatcagggttcagtgagcagccctgccctat
cagggctcagttaacagacccgtccaatcattcagggttcagtgagcagc
cctgtcctatcagggctcagtgagcagacccatccaatcaatcagggttc
agtgagcagctctgtcctatcaggctcggttagcagacccgtccaatcat
tcagggttctgttgagcagccctgtctatcagggctcagttagcagaact
cattcaatcaatcagggttcagtgaagcagccctgtcttatcaagggctc
gttgacgaaaccgtcaaatcattcatggtccaggtgagcagtgccttgtc
tatcagggctcaaaggagcagaccaatcatcatcaggtcaagtggaacag
ctctgttctatatcagggc

gaattccttgtctctgcctccctcatactgggatgccaggtggactggct
cagcttcgggtcctaggatctgaaccacacacttcacctactgagcagtc
gccccaccatcaaggatttctttctaaaaggtgacgttaaattcaaattt
ggaacgggctaaacatggaggtcgtaacatttttccatcagtgaaacagc
cttactggtcttaaacaaaatcctgtgctgaacgggatgagttatctgtc
tgggcctttggatcattctcaggtccctgtgtgggatggtgaagggattg
gatccctttcctgagtgttccaattttctgttgcaacctgaacttcaaag
acagcaagcagtcttgctgttgtttattaggaagtggccctgagaaaggc
aggagatgtggactttcaaaggtcgggagtggctacaatgagtagtaaaa
cagctcgcattatatattttgtatcttcctcaatttagtcaactgcacct
gaaagctctgtccttgagccctttctgaacaccctcatatttgatctcat
atagtttggccctgaattatataaaacaaacaaaccatagcaaaccagaa
tcttgtccttgggtcacttattcaaggtgatctgtgtggtcacaatagta
gttctgtggggctcttacctagaaataagaatttctattcctttgccctg
attttttccctgctgtttgaatgcatgctctgtcagagtgctggtgtgct
gtacatactttggacctgtctcctgatggacagccacttgatagtaatta
ctctgttgaagggacttgcttctaacaaaacacagacattctttatgctg
taaaaagcaactctagaatgtaccccctggaattctacagctctctgtga
catggaaaggacacattttattaatcaagcaattgtggaggaagttcttg
cccagcacgaattgatttacatagaagaattaactttataataatttatt
gcctagtcctcctatttgtcgaccaaagtcacacgactattaaatttgaa
gccctggtatagagctttccctctggtagtgtacaatgattgttggatat
atgaaatggcttatgagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191017732_191018947
seq2: B6Ng01-293M11.b_47_1265

seq1  GAATTCAGTGCTTGGGGGATAATGGATCATGAGTTAAAGTCTTTTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTGGGGGATAATGGATCATGAGTTAAAGTCTTTTGATGT  50

seq1  GATGGTGGTATGCTAGACTCATCGGACTGTCTAGTGAGAAATGTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGTATGCTAGACTCATCGGACTGTCTAGTGAGAAATGTATGAAG  100

seq1  TCTTTAACATAACGTATAGAGTCTAGAGAAGTGGTTTAGTGGGAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAACATAACGTATAGAGTCTAGAGAAGTGGTTTAGTGGGAGAACAC  150

seq1  ATGCTTGCCGTGCATCAGGCCCTGCATTTAACCTATTGTAAAAACGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCCGTGCATCAGGCCCTGCATTTAACCTATTGTAAAAACGTTTT  200

seq1  AAAAATATATACAAAATAAGTATTAAAAGCATTATATAAAAAATTAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATACAAAATAAGTATTAAAAGCATTATATAAAAAATTAGTGC  250

seq1  CTCTGTCTGCTCTGGCAGACCTATTTGACATGTAGTTTTTACTGAGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGCTCTGGCAGACCTATTTGACATGTAGTTTTTACTGAGCTAT  300

seq1  TCATATTCTTCCATATCTTTGTTAATTATTTCGAGCATATATGTGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCTTCCATATCTTTGTTAATTATTTCGAGCATATATGTGAAATG  350

seq1  TATTTCAAAAATCCTCATCCTGTGTCCATGAAGTAGAAGAAGCTCTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAAAATCCTCATCCTGTGTCCATGAAGTAGAAGAAGCTCTTTAC  400

seq1  AAATGGGCGCTTTTGTTTGATCATGCTCACAGTGTTCTATCCTAGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCGCTTTTGTTTGATCATGCTCACAGTGTTCTATCCTAGTAAGC  450

seq1  AGCCCGGTCCTATCAGGGCTTGGTGAGCAGCTCTGTCCTATCAGGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGTCCTATCAGGGCTTGGTGAGCAGCTCTGTCCTATCAGGGCTCA  500

seq1  GTTAGCAGACCCGTCCAATCATTCAGGGTTCTGTGAGCAGCCCTGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGACCCGTCCAATCATTCAGGGTTCTGTGAGCAGCCCTGTCCTA  550

seq1  TCAGGGCTCGGTTAGCAGACCCATCCAATCAATCAGGGTTCAGTGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTCGGTTAGCAGACCCATCCAATCAATCAGGGTTCAGTGAGCAG  600

seq1  CTCTGTCCTATCAGGGCTCAGTTAGCAGACCCGTCCAATCATTCAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTATCAGGGCTCAGTTAGCAGACCCGTCCAATCATTCAGGGTT  650

seq1  CTGTGAGCAGCCCTGTCCTATCAGGGCTCAGTGAGCAGACCCATCCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCAGCCCTGTCCTATCAGGGCTCAGTGAGCAGACCCATCCAATC  700

seq1  AATCAGGGTTCAGTGAGCAGCTCTGTCCTATCAGGGCTCAGTTAGCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGTTCAGTGAGCAGCTCTGTCCTATCAGGGCTCAGTTAGCAGAC  750

seq1  CCGTCCAATCATTCAGGGTTCAGTGAGCAGCCCTGTCCTATCAGGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCAATCATTCAGGGTTCAGTGAGCAGCCCTGTCCTATCAGGGCTCA  800

seq1  GTGAGCAGACCCTCCAATCAATCAGGGTTCAGTGAGCAGCCCTGCCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGACCCTCCAATCAATCAGGGTTCAGTGAGCAGCCCTGCCCTAT  850

seq1  CAGGGCTCAGTTAACAGACCCGTCCAATCATTCAGGGTTCAGTGAGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCAGTTAACAGACCCGTCCAATCATTCAGGGTTCAGTGAGCAGC  900

seq1  CCTGTCCTATCAGGGCTCAGTGAGCAGACCCATCCAATCAATCAGGGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTATCAGGGCTCAGTGAGCAGACCCATCCAATCAATCAGGGTTC  950

seq1  AGTGAGCAGCTCTGTCCTATCAGGGCTCGGTTAGCAGACCCGTCCAATCA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTGAGCAGCTCTGTCCTATCA-GGCTCGGTTAGCAGACCCGTCCAATCA  999

seq1  TTCAGGGTTCTG-TGAGCAGCCCTGTCCTATCAGGGCTCAGTTAGCAG-A  1048
      |||||||||||| ||||||||||||| ||||||||||||||||||||| |
seq2  TTCAGGGTTCTGTTGAGCAGCCCTGT-CTATCAGGGCTCAGTTAGCAGAA  1048

seq1  CCCATCCAATCAATCAGGGTTCAGTG-AGCAGCCCTGTCCTATC-AGGGC  1096
      | ||| |||||||||||||||||||| |||||||||||| |||| |||||
seq2  CTCATTCAATCAATCAGGGTTCAGTGAAGCAGCCCTGTCTTATCAAGGGC  1098

seq1  TCAGTGAGCAGACCCGTCCAATCATTCAGGGTTCA-GTGAGCA--GCCCT  1143
      ||  ||| |  | ||||| ||||||||| ||| || |||||||  ||| |
seq2  TCGTTGA-CGAAACCGTCAAATCATTCATGGTCCAGGTGAGCAGTGCCTT  1147

seq1  GTCCTATCAGGGCTC-AGTGAGCAGACCCATTCAATCA--ATCAGGGTTC  1190
      || |||||||||||| |  ||||||||     ||||||  |||| |||  
seq2  GT-CTATCAGGGCTCAAAGGAGCAGAC-----CAATCATCATCA-GGTCA  1190

seq1  AGT-GAGCAGCTCTGTCC--TATCAGGGC  1216
      ||| || ||||||||| |  |||||||||
seq2  AGTGGAACAGCTCTGTTCTATATCAGGGC  1219


seq1: chr1_191195512_191196605
seq2: B6Ng01-293M11.g_67_1187 (reverse)

seq1  TATAC-CATAAGC--ATTCATATACCAGACATTCATTGT-CACTA-CAGA  45
      ||||| |||||||   |||||||| |  ||| ||||||| ||||| ||||
seq2  TATACTCATAAGCCATTTCATATATCCAACAATCATTGTACACTACCAGA  50

seq1  -GGAAAGCTC--TACCA-GGCTCCAA--TTTATAGTC--GTGACTTGGGT  87
       |||||||||  ||||| |||| |||  || ||||||  ||||||| |||
seq2  GGGAAAGCTCTATACCAGGGCTTCAAATTTAATAGTCGTGTGACTTTGGT  100

seq1  CGACAAATAGGAGG-CTAG--CATAA--TATTTATAAGTT-ATTCTTCTA  131
      |||||||||||||| ||||   ||||  ||||   ||||| |||||||||
seq2  CGACAAATAGGAGGACTAGGCAATAAATTATTATAAAGTTAATTCTTCTA  150

seq1  TTGTAATCAATTCGTGCTGGGCAAG-ACTT-CTCCACAATTGCTTGATT-  178
      |   ||||||||||||||||||||| |||| |||||||||||||||||| 
seq2  TGTAAATCAATTCGTGCTGGGCAAGAACTTCCTCCACAATTGCTTGATTA  200

seq1  ATTAAATGTGTCC-TTCCATGTCACAGAGAGCTGTAGAATTCCAGGGGGT  227
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTGTCCTTTCCATGTCACAGAGAGCTGTAGAATTCCAGGGGGT  250

seq1  ACATTCTAGAGTTGC-TTTTACAGCATAAAGAATGTCTGTGTTTTGTTAG  276
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATTCTAGAGTTGCTTTTTACAGCATAAAGAATGTCTGTGTTTTGTTAG  300

seq1  AAGCAAGT-CCTTCAACAGAGTAATTACTATCAAGTGGCTGTCCATCAGG  325
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTCCCTTCAACAGAGTAATTACTATCAAGTGGCTGTCCATCAGG  350

seq1  AGACAGGTCCAAAGTATGTACAGCACACCAGCACTCTGACAGAGCATGCA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTCCAAAGTATGTACAGCACACCAGCACTCTGACAGAGCATGCA  400

seq1  TTC-AACAGCAGGG-AAAAATCAGGGCAAAGGAATAGAAATTCTTATTTC  423
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGCAGGGAAAAAATCAGGGCAAAGGAATAGAAATTCTTATTTC  450

seq1  TAGGTAAGAGCCCCACAGAACTACTATTGTGACCACACAGATCACCTTGA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGAGCCCCACAGAACTACTATTGTGACCACACAGATCACCTTGA  500

seq1  ATAAGTGACCCAAGGACAAGATTCTGGTTTGCTATGGTTTGTTTGTTTTA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGACCCAAGGACAAGATTCTGGTTTGCTATGGTTTGTTTGTTTTA  550

seq1  TATAATTCAGGGCCAAACTATATGAGATCAAATATGAGGGTGTTCAGAAA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCAGGGCCAAACTATATGAGATCAAATATGAGGGTGTTCAGAAA  600

seq1  GGGCTCAAGGACAGAGCTTTCAGGTGCAGTTGACTAAATTGAGGAAGATA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAGGACAGAGCTTTCAGGTGCAGTTGACTAAATTGAGGAAGATA  650

seq1  CAAAATATATAATGCGAGCTGTTTTACTACTCATTGTAGCCACTCCCGAC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATAATGCGAGCTGTTTTACTACTCATTGTAGCCACTCCCGAC  700

seq1  CTTTGAAAGTCCACATCTCCTGCCTTTCTCAGGGCCACTTCCTAATAAAC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGTCCACATCTCCTGCCTTTCTCAGGGCCACTTCCTAATAAAC  750

seq1  AACAGCAAGACTGCTTGCTGTCTTTGAAGTTCAGGTTGCAACAGAAAATT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGACTGCTTGCTGTCTTTGAAGTTCAGGTTGCAACAGAAAATT  800

seq1  GGAACACTCAGGAAAGGGATCCAATCCCTTCACCATCCCACACAGGGACC  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTCAGGAAAGGGATCCAATCCCTTCACCATCCCACACAGGGACC  850

seq1  TGAGAATGATCCAAAGGCCCAGACAGATAACTCATCCCGTTCAGCACAGG  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGATCCAAAGGCCCAGACAGATAACTCATCCCGTTCAGCACAGG  900

seq1  ATTTTGTTTAAGACCAGTAAGGCTGTTTCACTGATGGAAAAATGTTACGA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTAAGACCAGTAAGGCTGTTTCACTGATGGAAAAATGTTACGA  950

seq1  CCTCCATGTTTAGCCCGTTCCAAATTTGAATTTAACGTCACCTTTTAGAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTTTAGCCCGTTCCAAATTTGAATTTAACGTCACCTTTTAGAA  1000

seq1  AGAAATCCTTGATGGTGGGGCGACTGCTCAGTAGGTGAAGTGTGTGGTTC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTTGATGGTGGGGCGACTGCTCAGTAGGTGAAGTGTGTGGTTC  1050

seq1  AGATCCTAGGACCCGAAGCTGAGCCAGTCCACCTGGCATCCCAGTATGAG  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTAGGACCCGAAGCTGAGCCAGTCCACCTGGCATCCCAGTATGAG  1100

seq1  GGAGGCAGAGACAAGGAATTC  1094
      |||||||||||||||||||||
seq2  GGAGGCAGAGACAAGGAATTC  1121


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