BAC Information

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BAC

Clone NameB6Ng01-293O05
Chromosome1 (Build37)
Map Location 69,844,378 - 69,984,518
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O05.bB6Ng01-293O05.g
ACCGA090158GA090159
length1,1891,156
definitionB6Ng01-293O05.b B6Ng01-293O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,844,378 - 69,845,588)(69,983,357 - 69,984,518)
sequence
gaattctctatgttacacacataattactttcttccatagcagagtagcg
tggtatcgaatacagaaataaaatctcttcgttcattccttgagcactgg
aggtcattctcacttcttgggtgttatgaactaaacccaccatgcacata
gtaggtgcttatgttgcaaaaaacttcccatttcatcagaatccctcttt
aacggaagtcagtgcaaacatgcttacatgaataatacagggacattatt
aatgtttctctatctctatttccatgctggtagaatggagactccatgag
aaaatcatgtgacatgtacaacaccatgctggtacacaatctacattcag
tctatgaagtaatgactgttatagtctaaggacgttttctaggagagatg
aggaacagcagtccacgggtatttatggttgcctcacacatgcaaaaggt
ttctctgtttctccatcctactcttgggcttctagttgaacaaggtctcc
agtcacagcagctgcaccaatgcacccgatctttaaatccagcatcacca
gtgagatccttggcatccttagggaaaatcatagtcaagttgtaatatat
ttcttctgtagaggtggagaaaatgcagcattttacaatatattttgtta
ggagtaattttatcattatgattcctaccatatttgtattttgaaggaaa
tgttctgttggtgaggcatattgttcaaacatttgaagcttggtcattga
ataaaacagaatgaagacggagtgaattgcatgtagtaacgtgtgtagaa
aatacatgcttgttgggcagtggtggcacacgcctttgatcctagcattt
gggaggcagaggcagtggatttctgagttcaaggccagcctggtctacag
agtgagtgccaggacagccagggctacacagagaaaccctgtctccaaaa
taaacaacaaacaacaacaacacaaaaagaaagaaaaagaaaggaaatct
gctctcccctctttcttctccctctccctctctctcctcttccctccctc
atccctcctctttccctctgggctttttgggatggtggtgtggaggcaat
gcaatgtgtgggtgtaatactttcctaaacagaaataaaggtttccctca
gtctagcattctgtccagaacattccttccaaaacctgc

gaattctctgtttagctctgtaccacatttttgtttttagagaaaaaaat
gcatttattgatttgtgcttattccaaaggacaataatccatgagtggag
tggaggaatggcaatgagaagtagaaatttcaacaggagcaggaagctga
aggcaacagaaaacacaaagtagacattgtaaactagcagtagggtgaga
tttcagtcctcagagtctgctcacagtgattacaccctttagcatggcaa
cacctcatgagccaccctaatagacaaccatttggggaccaagtaacaat
cataacaggagactatgggagcatttatcattcaaaccacaacagtgcct
ttctccatcctttctgtgtttagataagtcttaggcgtagtgatcccttg
atcatttaagatgaaaaaaatgttgaaagtattttggaatagtgaataat
actgaagatacttcttaaggtggacaatgaattgccctgaaacagagaag
aaaacagattccatcaagattattgttcaacacagttggagtcacagaat
ttctgttgagttttccctttcatcttgacttctgcccttcttgcaactgc
ttcacatttcctctgacaatcaggttgtttccatacacaatggcacagga
gactggtactgcagcttctacttctcttctacaagctaggaaaatcccat
gggcttcattatcgtatccagggaactttccagagaggcatgaggcagaa
gctacctgtgcaggactgcagagctgcacctcagaacaaagagaaacttg
agaaaacatgactgaacccagagaaagcagaagaaatgtggggatccaaa
tagaaagtcattacattgatttctatgttagtccctggcattctttgtgt
gtgtgtgtgtgtacatttgtatatgtgtacatattttgcataggtcagag
gtcacactggggtatctgctaaatcattcttcaccttatttttttttctt
caatttagacttctttttttaattagttttatttttcacagtccagttca
tgactcctcccaagtcttccctcccacatttcctcattccaattcctcct
tccccttgttctcagaagaactcaccttatggccagcgccttccacctcc
ctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69844378_69845588
seq2: B6Ng01-293O05.b_45_1233

seq1  GAATTCTCTATGTTACACACATAATTACTTTCTTCCATAGCAGAGTAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTTACACACATAATTACTTTCTTCCATAGCAGAGTAGCG  50

seq1  TGGTATCGAATACAGAAATAAAATCTCTTCGTTCATTCCTTGAGCACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCGAATACAGAAATAAAATCTCTTCGTTCATTCCTTGAGCACTGG  100

seq1  AGGTCATTCTCACTTCTTGGGTGTTATGAACTAAACCCACCATGCACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTCTCACTTCTTGGGTGTTATGAACTAAACCCACCATGCACATA  150

seq1  GTAGGTGCTTATGTTGCAAAAAACTTCCCATTTCATCAGAATCCCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGCTTATGTTGCAAAAAACTTCCCATTTCATCAGAATCCCTCTTT  200

seq1  AACGGAAGTCAGTGCAAACATGCTTACATGAATAATACAGGGACATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAAGTCAGTGCAAACATGCTTACATGAATAATACAGGGACATTATT  250

seq1  AATGTTTCTCTATCTCTATTTCCATGCTGGTAGAATGGAGACTCCATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTCTATCTCTATTTCCATGCTGGTAGAATGGAGACTCCATGAG  300

seq1  AAAATCATGTGACATGTACAACACCATGCTGGTACACAATCTACATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGTGACATGTACAACACCATGCTGGTACACAATCTACATTCAG  350

seq1  TCTATGAAGTAATGACTGTTATAGTCTAAGGACGTTTTCTAGGAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAGTAATGACTGTTATAGTCTAAGGACGTTTTCTAGGAGAGATG  400

seq1  AGGAACAGCAGTCCACGGGTATTTATGGTTGCCTCACACATGCAAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCAGTCCACGGGTATTTATGGTTGCCTCACACATGCAAAAGGT  450

seq1  TTCTCTGTTTCTCCATCCTACTCTTGGGCTTCTAGTTGAACAAGGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTTTCTCCATCCTACTCTTGGGCTTCTAGTTGAACAAGGTCTCC  500

seq1  AGTCACAGCAGCTGCACCAATGCACCCGATCTTTAAATCCAGCATCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCAGCTGCACCAATGCACCCGATCTTTAAATCCAGCATCACCA  550

seq1  GTGAGATCCTTGGCATCCTTAGGGAAAATCATAGTCAAGTTGTAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCCTTGGCATCCTTAGGGAAAATCATAGTCAAGTTGTAATATAT  600

seq1  TTCTTCTGTAGAGGTGGAGAAAATGCAGCATTTTACAATATATTTTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTAGAGGTGGAGAAAATGCAGCATTTTACAATATATTTTGTTA  650

seq1  GGAGTAATTTTATCATTATGATTCCTACCATATTTGTATTTTGAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTTTATCATTATGATTCCTACCATATTTGTATTTTGAAGGAAA  700

seq1  TGTTCTGTTGGTGAGGCATATTGTTCAAACATTTGAAGCTTGGTCATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTGGTGAGGCATATTGTTCAAACATTTGAAGCTTGGTCATTGA  750

seq1  ATAAAACAGAATGAAGACGGAGTGAATTGCATGTAGTAACGTGTGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGAATGAAGACGGAGTGAATTGCATGTAGTAACGTGTGTAGAA  800

seq1  AATACATGCTTGTTGGGCAGTGGTGGCACACGCCTTTGATCCTAGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGCTTGTTGGGCAGTGGTGGCACACGCCTTTGATCCTAGCATTT  850

seq1  GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCA-GTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  899

seq1  GAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCC-AA  948

seq1  AATAAACAAACAAACAAACAAACAAACAACAAAAAAGAAAAGAAAAAAGA  1000
      |||||||     |||||||||   ||||||| ||||  |||||||||   
seq2  AATAAAC-----AACAAACAA--CAACAACACAAAAAGAAAGAAAAA--G  989

seq1  AAAGGAAATACATGCTCTCCCCTCTTTCTTCCTCCCTCTCCCTCTCTCTC  1050
      |||||||||   |||||||||||||||||| |||||||||||||||||| 
seq2  AAAGGAAAT--CTGCTCTCCCCTCTTTCTT-CTCCCTCTCCCTCTCTCT-  1035

seq1  CCTCTTTCCCTCCCTTCATCCCTCCTTCCTTTCCCTCTTGTGCTTTTTTG  1100
      |||| ||||||||| |||||||||||  ||||||||| || |||||||  
seq2  CCTC-TTCCCTCCC-TCATCCCTCCT--CTTTCCCTC-TGGGCTTTTT--  1078

seq1  TGTATGTGTGTGTGATGTGCATGC-ATGTGTTGGTGT-ATACTTT-CTAT  1147
       | |||   |||||  |   |||| |||||| ||||| ||||||| ||| 
seq2  GGGATGGTGGTGTGGAGGCAATGCAATGTGTGGGTGTAATACTTTCCTAA  1128

seq1  ACAGAGTAGAAAAGTTT-CCTCAGTCTAAGCATTCTGTCAAGATCATTCC  1196
      |||||  | ||| |||| ||||||||| ||||||||||| ||| ||||||
seq2  ACAGA-AATAAAGGTTTCCCTCAGTCT-AGCATTCTGTCCAGAACATTCC  1176

seq1  TTTCCCAAAACCTGC  1211
      ||  |||||||||||
seq2  TT--CCAAAACCTGC  1189


seq1: chr1_69983357_69984518
seq2: B6Ng01-293O05.g_67_1222 (reverse)

seq1  CCCCAGGGAGTGGGAAGGGCTGCTGGGCATAGAGGGTGGAATGTCCTCTT  50
      ||||||||||  ||||||   ||||| |||  | ||||  |  || ||| 
seq2  CCCCAGGGAGGTGGAAGG--CGCTGGCCAT--AAGGTG--AGTTCTTCTG  44

seq1  GGAGACAGGGGGAGGAAGAA-TGGGATGAGGAAATGTGGGAGGGAAGAC-  98
       ||   ||||| |||| ||| ||| |||||||||||||||||||||||| 
seq2  AGAACAAGGGGAAGGAGGAATTGGAATGAGGAAATGTGGGAGGGAAGACT  94

seq1  TGGGAGGAGGGCAATGACTGGACTGTGAAAAATAAAACTAAT--AAAAAA  146
      |||||||| | ||   ||||||||||||||||||||||||||  ||||||
seq2  TGGGAGGA-GTCATGAACTGGACTGTGAAAAATAAAACTAATTAAAAAAA  143

seq1  GAAGTCTAAATTTGAAGAAAAAAAAATAAGGTGAAGAATGATTTAGCAAG  196
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GAAGTCTAAA-TTGAAGAAAAAAAAATAAGGTGAAGAATGATTTAGC-AG  191

seq1  ATA-CCCAGTGTTGACCTCTGACCTATGCAAAATATGTACACATATACAA  245
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAGTG-TGACCTCTGACCTATGCAAAATATGTACACATATACAA  240

seq1  ATGTACACACACACACACACAAAGAATGCCAGGGACTAACATAGAAATCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACACACACACACACAAAGAATGCCAGGGACTAACATAGAAATCA  290

seq1  ATGTAATGACTTTCTATTTGGATCCCCACATTTCTTCTGCTTTCTCTGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGACTTTCTATTTGGATCCCCACATTTCTTCTGCTTTCTCTGGG  340

seq1  TTCAGTCATGTTTTCTCAAGTTTCTCTTTGTTCCTGAGGTGCAGCTCTGC  395
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCAGTCATGTTTTCTCAAGTTTCTCTTTGTT-CTGAGGTGCAGCTCTGC  389

seq1  AGTCCTGCACAGGTAGCTTCTGCCTCATGCCTCTCTGGAAAGTTCCCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCACAGGTAGCTTCTGCCTCATGCCTCTCTGGAAAGTTCCCTGG  439

seq1  ATACGATAATGAAGCCCATGGGATTTTCCTAGCTTGTAGAAGAGAAGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGATAATGAAGCCCATGGGATTTTCCTAGCTTGTAGAAGAGAAGTAG  489

seq1  AAGCTGCAGTACCAGTCTCCTGTGCCATTGTGTATGGAAACAACCTGATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAGTACCAGTCTCCTGTGCCATTGTGTATGGAAACAACCTGATT  539

seq1  GTCAGAGGAAATGTGAAGCAGTTGCAAGAAGGGCAGAAGTCAAGATGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGAAATGTGAAGCAGTTGCAAGAAGGGCAGAAGTCAAGATGAAA  589

seq1  GGGAAAACTCAACAGAAATTCTGTGACTCCAACTGTGTTGAACAATAATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTCAACAGAAATTCTGTGACTCCAACTGTGTTGAACAATAATC  639

seq1  TTGATGGAATCTGTTTTCTTCTCTGTTTCAGGGCAATTCATTGTCCACCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAATCTGTTTTCTTCTCTGTTTCAGGGCAATTCATTGTCCACCT  689

seq1  TAAGAAGTATCTTCAGTATTATTCACTATTCCAAAATACTTTCAACATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTATCTTCAGTATTATTCACTATTCCAAAATACTTTCAACATTT  739

seq1  TTTTCATCTTAAATGATCAAGGGATCACTACGCCTAAGACTTATCTAAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTTAAATGATCAAGGGATCACTACGCCTAAGACTTATCTAAAC  789

seq1  ACAGAAAGGATGGAGAAAGGCACTGTTGTGGTTTGAATGATAAATGCTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGATGGAGAAAGGCACTGTTGTGGTTTGAATGATAAATGCTCC  839

seq1  CATAGTCTCCTGTTATGATTGTTACTTGGTCCCCAAATGGTTGTCTATTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTCCTGTTATGATTGTTACTTGGTCCCCAAATGGTTGTCTATTA  889

seq1  GGGTGGCTCATGAGGTGTTGCCATGCTAAAGGGTGTAATCACTGTGAGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCATGAGGTGTTGCCATGCTAAAGGGTGTAATCACTGTGAGCA  939

seq1  GACTCTGAGGACTGAAATCTCACCCTACTGCTAGTTTACAATGTCTACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGGACTGAAATCTCACCCTACTGCTAGTTTACAATGTCTACTT  989

seq1  TGTGTTTTCTGTTGCCTTCAGCTTCCTGCTCCTGTTGAAATTTCTACTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCTGTTGCCTTCAGCTTCCTGCTCCTGTTGAAATTTCTACTTC  1039

seq1  TCATTGCCATTCCTCCACTCCACTCATGGATTATTGTCCTTTGGAATAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCATTCCTCCACTCCACTCATGGATTATTGTCCTTTGGAATAAG  1089

seq1  CACAAATCAATAAATGCATTTTTTTCTCTAAAAACAAAAATGTGGTACAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCAATAAATGCATTTTTTTCTCTAAAAACAAAAATGTGGTACAG  1139

seq1  AGCTAAACAGAGAATTC  1162
      |||||||||||||||||
seq2  AGCTAAACAGAGAATTC  1156


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