BAC Information

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BAC

Clone NameB6Ng01-297D11
Chromosome1 (Build37)
Map Location 196,592,673 - 196,593,815
singlet/doubletsinglet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297D11.bB6Ng01-297D11.g
ACCGA092627GA092628
length1,1691,130
definitionB6Ng01-297D11.b B6Ng01-297D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggtagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgaaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacataatactaccagaggatcccgtaatacctcttctgggc
atatatccagaagatgttccaacaggtaaaaaggacacatgctccactat
gttcataacagcctcatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatatagaaaatgtggtacatttacacaatg
gagtactactcaactattaaatataatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggaaacccaatcacaaa
ggaactcacacaatatggactcactgataagtggatataagtgataagcc
cagaaacttaggatacccaagatataagatacaatttgctaaacgcatga
aattcaagaagaacgaagaccaaagtgtggacactttgccccttcttaga
attgggaacaaaacacccatggaaggagttacagagaaagtttggagctg
tgacgaaaggatggaccatctagagactgccataaccagggatccatccc
ataatcagcttccaaacgctgacaccattgcatacactagcaagattttg
ctgaaaggaccctgatatagctgtctcttgtgaggctatgctggtgcctg
gcaaacacagaagtggatgctcacagtcagctattggaaggaacacagga
cccccggtggaggagctagagaaagtacccaaggagctaaagagatctgc
aacccataggtgaacacatttatgactaaccagtaccccggagtctgatc
tagctgcatgtgtatcaaagatgctagtcgcatcactggaaagagaggcc
catgacttgcaaccttaatatgctcagttacagggaccatgtaaaagtgc
atggtggtaagggaatttg

gaattcacttggatctctgaattctcagtactaataagaaaagaataagc
cctgagctcagaacacataaagctacactttatggcttgttcctctaggg
cctccaaattagttagaaaaaaaatcaaaactaaatgcttgcagaatgat
catgtaatctatcaggaactagtttgtcctctctgggaaaatacattctt
catctacgttggtatgaataggttggactcactctcttcttgctaccatg
cctcctacttcagccacttagactttctttaagcacaagctgactctgtt
accagacccacacaatttctagggtgccaactgagattcctgtcttctca
ggacccaacatcagcagcacacgaagcttgagaccagtacccatagtaag
ctgggaaagtcactacatctttttgagcttcattcagttttaaacttaca
atgaagaaatgagcccatatctctcatttgtgagggacagctcaagagca
ctgttagagttcaaagaaaagttagtaggtgtgtacataactgtggagca
cctctttcaaacctccccacaaccaactattatctccataataaatatag
gtaaacaagatttggagaggctaaatactttgtaacactgctaacaagta
gagaagtcacaattaaagcacagatctgattcagtccaggagcaaaaacc
tttaactcattattttctgctgtgcctctggatgactgcctaaggcaccc
tattcactctccatgttttgctcttgcaggggtggtgaccccaatgttgt
ctgtggttgggggcagatctgttgcacctacaaacagaagctatgtgatg
agcttctgcagtcctatctatgatggtcccctctctttgcagtacatctc
tacaagtgtgcagcccagcgggaaagctgtggtctctgcctcaaggctga
ccacaagttcgagtggtggctggtgcagtggtgagcgcagatgtaccctc
cacagcactgccccagcacttctagccctggcttgactggtcagccacat
gtcagtgttcaaccccaaatcacagaggttagtcttcagctttcaaggaa
agggacagcaggacatagcaagaaattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196592673_196593815
seq2: B6Ng01-297D11.g_70_1199

seq1  GAATTCACTTGGATCTCTGAATTCTCAGTACTAATAAGAAAAGAATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGATCTCTGAATTCTCAGTACTAATAAGAAAAGAATAAGC  50

seq1  CCTGAGCTCAGAACACATAAAGCTACACTTTATGGCTTGTTCCTCTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCAGAACACATAAAGCTACACTTTATGGCTTGTTCCTCTAGGG  100

seq1  CCTCCAAATTAGTTAGAAAAAAAATCAAAACTAAATGCTTGCAGAATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATTAGTTAGAAAAAAAATCAAAACTAAATGCTTGCAGAATGAT  150

seq1  CATGTAATCTATCAGGAACTAGTTTGTCCTCTCTGGGAAAATACATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATCTATCAGGAACTAGTTTGTCCTCTCTGGGAAAATACATTCTT  200

seq1  CATCTACGTTGGTATGAATAGGTTGGACTCACTCTCTTCTTGCTACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACGTTGGTATGAATAGGTTGGACTCACTCTCTTCTTGCTACCATG  250

seq1  CCTCCTACTTCAGCCACTTAGACTTTCTTTAAGCACAAGCTGACTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTTCAGCCACTTAGACTTTCTTTAAGCACAAGCTGACTCTGTT  300

seq1  ACCAGACCCACACAATTTCTAGGGTGCCAACTGAGATTCCTGTCTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCCACACAATTTCTAGGGTGCCAACTGAGATTCCTGTCTTCTCA  350

seq1  GGACCCAACATCAGCAGCACACGAAGCTTGAGACCAGTACCCATAGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAACATCAGCAGCACACGAAGCTTGAGACCAGTACCCATAGTAAG  400

seq1  CTGGGAAAGTCACTACATCTTTTTGAGCTTCATTCAGTTTTAAACTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGTCACTACATCTTTTTGAGCTTCATTCAGTTTTAAACTTACA  450

seq1  ATGAAGAAATGAGCCCATATCTCTCATTTGTGAGGGACAGCTCAAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAATGAGCCCATATCTCTCATTTGTGAGGGACAGCTCAAGAGCA  500

seq1  CTGTTAGAGTTCAAAGAAAAGTTAGTAGGTGTGTACATAACTGTGGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGAGTTCAAAGAAAAGTTAGTAGGTGTGTACATAACTGTGGAGCA  550

seq1  CCTCTTTCAAACCTCCCCACAACCAACTATTATCTCCATAATAAATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCAAACCTCCCCACAACCAACTATTATCTCCATAATAAATATAG  600

seq1  GTAAACAAGATTTGGAGAGGCTAAATACTTTGTAACACTGCTAACAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGATTTGGAGAGGCTAAATACTTTGTAACACTGCTAACAAGTA  650

seq1  GAGAAGTCACAATTAAAGCACAGATCTGATTCAGTCCAGGAGCAAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCACAATTAAAGCACAGATCTGATTCAGTCCAGGAGCAAAAACC  700

seq1  TTTAACTCATTATTTTCTGCTGTGCCTCTGGATGACTGCCTAAGGCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCATTATTTTCTGCTGTGCCTCTGGATGACTGCCTAAGGCACCC  750

seq1  TATTCACTCTCCATGTTTTGCTCTTGCAGGGGTGGTGACCCCAATGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTCTCCATGTTTTGCTCTTGCAGGGGTGGTGACCCCAATGTTGT  800

seq1  CTGTGGTTGGGGGCAGATCTGTTGCACCTACAAACAGAAGCTATGTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTGGGGGCAGATCTGTTGCACCTACAAACAGAAGCTATGTGATG  850

seq1  AGCTTCTGCAGTCCTATCTATGATGGTCCCCTCTCTTTGCAGTACATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCAGTCCTATCTATGATGGTCCCCTCTCTTTGCAGTACATCTC  900

seq1  TACAAGTGTGCAGCCCAGCGGGAAAGCTGTGGTCTCTGCCTCAAGGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGTGCAGCCCAGCGGGAAAGCTGTGGTCTCTGCCTCAAGGCTGA  950

seq1  CCACAAGTTCGAGT-GTGGCTGGTGCAGTGGTGAGCGCAGATGTACCCTC  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCACAAGTTCGAGTGGTGGCTGGTGCAGTGGTGAGCGCAGATGTACCCTC  1000

seq1  CACCAGCACTGCCCCAGCACTTCTAGCCCCTGGCTTGACTGGTCCAGCCA  1049
      || ||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CA-CAGCACTGCCCCAGCACTTCTAG-CCCTGGCTTGACTGGT-CAGCCA  1047

seq1  CAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGTAAGTCTCCAGCTTC  1099
      | ||||| |||||||  | ||||||||||||||||| ||||| |||||| 
seq2  C-ATGTC-AGTGTTC--AACCCCAAATCACAGAGGTTAGTCTTCAGCTTT  1093

seq1  CAAAAGAAAAGGGAACAGCCAGGGACATAGCAAAGAAATATATT  1143
      |  ||| |||||| |||||   ||||||||| ||||||| ||||
seq2  C--AAGGAAAGGG-ACAGC--AGGACATAGC-AAGAAAT-TATT  1130


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