BAC Information

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BAC

Clone NameB6Ng01-297L03
Chromosome1 (Build37)
Map Location 36,894,292 - 37,048,888
singlet/doubletdoublet
Overlap geneTmem131, EG241053
Upstream geneLOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70
Downstream geneA230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L03.bB6Ng01-297L03.g
ACCGA092992GA092993
length1,1091,185
definitionB6Ng01-297L03.b B6Ng01-297L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,047,796 - 37,048,888)(36,894,292 - 36,895,472)
sequence
gaattccaatgtctaaaaactgttcttattttgtgtttgtaccacattaa
gagccaagattttaagctctactaaaaacaaaacaaacaaacacaaaaac
agactttatctagtcatctatttattatgttcatctttatctgtttatgt
tcatttaaaaaactaatagtgatatattattttaaaatatcatacagtta
atatatttggagttgtttgtttgtttgtttgtttttcgagacagagtttc
tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcc
tcaaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaag
gcttgcaccaccactgcctggcatatttggagttatttaaaatttatatt
gagaaaaacatatgtattttcagtattgctgtagacaaacatctacataa
gactgatcaattgattgttgttttatatcaaacagcctttataatactca
tttttattgttacaatattttataaattttaaagaatatgataaaaaatg
aaaggtattgcaggtttttgaagggggctctctgggaggagctgaggtac
aaaggggaaagaaggatgtgatgtaagtctatttattctaaatatgtttt
taaatgttaacaaaattcagataacatgaatgttatgcatattttttcat
cataatgcaataaaaacttaaaacaaagaaaaaaagttctaaaaaaagaa
acaatgtaatttttatgaaaaggttggatgagttttaaactgtttatgaa
gcagcaacctttcattgctgtcttaagctacctcatgacaacacagcacc
tacttgtgacctttagtcacacaaggaccgaccactcaacagcagttcac
acttgatgcacagtgaatccttttaaattaatcaactactggaacagttc
tggggtgttggggggtagaaggagccatacccagagggaagcctgaggct
taaggaacctcttacaacgccaaaccgcactaccataaatgggtcagccc
ccttgaaggaagccaaagtcattgaggacaataccatcgagacactgagc
cacatcttt
agagagccattgctcctaaatactgagccatctctctagtcgtttctcct
gcctcacagcctaaaatcgtttttaatgtgtattttctttaaacaaaatt
ttgggcacattttctgaaagtgtcttatttcaaacaataaatagatgagc
aagattagcttttaagtaaaaatgccatctttcttacatactgaaaggaa
tctgaaaaggaagttagatcaattttccctttatgttgaatcattaccat
acacctgcaactaatctgtttctttgtattctgtaaactatttcatgttt
atattgttttaattatgttcataatctattcttcatgttgtatatcaaaa
gatcctcatgttgatttgatgccctcttgccacagagtcccagaaccttg
tcataatgtatgtaatgaatggcaggaataactcttctgtgaaccattta
aaagaagaagaaaatgctggacttcacaggagcacacacgagcaagctct
gcttccacttacccacagcttcctggtgcctccttgctgacctgttggga
gctctaggtgaaggtcacctccactcgagtacatctctacgacctgtgac
aaagaaagtacacagcactctcacttcttgttgggcaggtgtagaagcag
atacactagggcaggcactagctcccatggctcatctgcagaagcaactg
actcaagttaactctgaaagtaaacctggaagcagtgtagtttcagaaac
taggttttaggaagcaacagaacaccttttttaaaaaataaataaataaa
aataaagatacatgtaaatgatgaagttttagaaatataagtttaaggct
tttgcagtgccacatgccctgtcttctcagcccttggggaggctgaggca
atcttgaattcaaggccatctgcgctgcacagtctgtggccatctttagg
ctacatgaggcttattttcagaaaacaaaaaccaaaaatgttatacgtac
atatcagttttacatatagctagatctaggtgggtggatccaattaacag
tgccatgagaagattaaccctcctgtgagatacatgtacaatctataaga
tccaagccactggttctggattggaaggtgtatatatgcttagcatggcc
agctctgggttgacccatagcacacattacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37047796_37048888
seq2: B6Ng01-297L03.b_50_1158 (reverse)

seq1  AAAGATGGTGGCTAGGTGTCTCGATGGTA-TGTCCTCACTGACTTGTGCT  49
      |||||| ||||||  |||||||||||||| |||||||| ||||||  |||
seq2  AAAGAT-GTGGCTCAGTGTCTCGATGGTATTGTCCTCAATGACTTTGGCT  49

seq1  TCC-TCAGGGGGCTTGACCCATTTGT-GTTGTGCGGTTTGGCGTTGGTAG  97
      ||| ||| ||||  |||||||||| | || ||||||||||||||||  ||
seq2  TCCTTCAAGGGGGCTGACCCATTTATGGTAGTGCGGTTTGGCGTTGTAAG  99

seq1  TGGTTCC-TAAGCCTCAGGCTTCCCTCTGGGTATGCCTCC-TCTGACACC  145
       |||||| ||||||||||||||||||||||||||| |||| |||  | ||
seq2  AGGTTCCTTAAGCCTCAGGCTTCCCTCTGGGTATGGCTCCTTCTACCCCC  149

seq1  CAACA-CCCAGAACTGTTCCAGTAGTTGATTTATTTTAAAAGA-TCACTG  193
      ||||| ||||||||||||||||||||||||| |||| ||| || ||||||
seq2  CAACACCCCAGAACTGTTCCAGTAGTTGATTAATTTAAAAGGATTCACTG  199

seq1  TGCATC-AGTGTG-ACTGCTGCTGAGT-GTCGGTCC-TGTGTGACTAAAG  239
      |||||| |||||| ||||||| ||||| |||||||| |||||||||||||
seq2  TGCATCAAGTGTGAACTGCTGTTGAGTGGTCGGTCCTTGTGTGACTAAAG  249

seq1  GTCAC-AGTAGGTGCTGTGTTGTCATGAGGTAGCTT-AGGCAGCAATG-A  286
      ||||| |||||||||||||||||||||||||||||| || |||||||| |
seq2  GTCACAAGTAGGTGCTGTGTTGTCATGAGGTAGCTTAAGACAGCAATGAA  299

seq1  AGGTTGCTGCTTCATAAACAGTTTAAAACTCATCCAACCTTTTCATAAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTGCTTCATAAACAGTTTAAAACTCATCCAACCTTTTCATAAAA  349

seq1  ATTTACATTGTTTCTTTTTTTAGAAC-TTTTTTCTTTGTTTTAAG-TTTT  384
      | |||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  A-TTACATTGTTTCTTTTTTTAGAACTTTTTTTCTTTGTTTTAAGTTTTT  398

seq1  ATTGCATTATGATGAAAAAATATGCATAA-TTTCATGTTATCTGAA-TTT  432
      |||||||||||||||||||||||||||||  ||||||||||||||| |||
seq2  ATTGCATTATGATGAAAAAATATGCATAACATTCATGTTATCTGAATTTT  448

seq1  GTTAACATTTAAAAACATATTTAGAATAAATAGACTTACATCACATCCTT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTAAAAACATATTTAGAATAAATAGACTTACATCACATCCTT  498

seq1  CTTTCCCCTTTGTACCTCAGCTCCTCCCAGAGAGCCCCCTTCAAAAACCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTTTGTACCTCAGCTCCTCCCAGAGAGCCCCCTTCAAAAACCT  548

seq1  GCAATACCTTTCATTTTTTATCATATTCTTTAAAATTTATAAAATATTGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCTTTCATTTTTTATCATATTCTTTAAAATTTATAAAATATTGT  598

seq1  AACAATAAAAATGAGTATTATAAAGGCTGTTTGATATAAAACAACAATCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAAATGAGTATTATAAAGGCTGTTTGATATAAAACAACAATCA  648

seq1  ATTGATCAGTCTTATGTAGATGTTTGTCTACAGCAATACTGAAAATACAT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAGTCTTATGTAGATGTTTGTCTACAGCAATACTGAAAATACAT  698

seq1  ATGTTTTTCTCAATATAAATTTTAAATAACTCCAAATATGCCAGGCAGTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCTCAATATAAATTTTAAATAACTCCAAATATGCCAGGCAGTG  748

seq1  GTGGTGCAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATT  798

seq1  TCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  848

seq1  GGCTACACAGAGAAACTCTGTCTCGAAAAACAAACAAACAAACAAACAAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACTCTGTCTCGAAAAACAAACAAACAAACAAACAAC  898

seq1  TCCAAATATATTAACTGTATGATATTTTAAAATAATATATCACTATTAGT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATATTAACTGTATGATATTTTAAAATAATATATCACTATTAGT  948

seq1  TTTTTAAATGAACATAAACAGATAAAGATGAACATAATAAATAGATGACT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGAACATAAACAGATAAAGATGAACATAATAAATAGATGACT  998

seq1  AGATAAAGTCTGTTTTTGTGTTTGTTTGTTTTGTTTTTAGTAGAGCTTAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTCTGTTTTTGTGTTTGTTTGTTTTGTTTTTAGTAGAGCTTAA  1048

seq1  AATCTTGGCTCTTAATGTGGTACAAACACAAAATAAGAACAGTTTTTAGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGCTCTTAATGTGGTACAAACACAAAATAAGAACAGTTTTTAGA  1098

seq1  CATTGGAATTC  1093
      |||||||||||
seq2  CATTGGAATTC  1109

seq1: chr1_36894292_36895472
seq2: B6Ng01-297L03.g_83_1267

seq1  AGAGAGCCATTGCTCCTAAATACTGAGCCATCTCTCTAGTCGTTTCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCATTGCTCCTAAATACTGAGCCATCTCTCTAGTCGTTTCTCCT  50

seq1  GCCTCACAGCCTAAAATCGTTTTTAATGTGTATTTTCTTTAAACAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACAGCCTAAAATCGTTTTTAATGTGTATTTTCTTTAAACAAAATT  100

seq1  TTGGGCACATTTTCTGAAAGTGTCTTATTTCAAACAATAAATAGATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCACATTTTCTGAAAGTGTCTTATTTCAAACAATAAATAGATGAGC  150

seq1  AAGATTAGCTTTTAAGTAAAAATGCCATCTTTCTTACATACTGAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGCTTTTAAGTAAAAATGCCATCTTTCTTACATACTGAAAGGAA  200

seq1  TCTGAAAAGGAAGTTAGATCAATTTTCCCTTTATGTTGAATCATTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGGAAGTTAGATCAATTTTCCCTTTATGTTGAATCATTACCAT  250

seq1  ACACCTGCAACTAATCTGTTTCTTTGTATTCTGTAAACTATTTCATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCAACTAATCTGTTTCTTTGTATTCTGTAAACTATTTCATGTTT  300

seq1  ATATTGTTTTAATTATGTTCATAATCTATTCTTCATGTTGTATATCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTTTAATTATGTTCATAATCTATTCTTCATGTTGTATATCAAAA  350

seq1  GATCCTCATGTTGATTTGATGCCCTCTTGCCACAGAGTCCCAGAACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCATGTTGATTTGATGCCCTCTTGCCACAGAGTCCCAGAACCTTG  400

seq1  TCATAATGTATGTAATGAATGGCAGGAATAACTCTTCTGTGAACCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGTATGTAATGAATGGCAGGAATAACTCTTCTGTGAACCATTTA  450

seq1  AAAGAAGAAGAAAATGCTGGACTTCACAGGAGCACACACGAGCAAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGAAAATGCTGGACTTCACAGGAGCACACACGAGCAAGCTCT  500

seq1  GCTTCCACTTACCCACAGCTTCCTGGTGCCTCCTTGCTGACCTGTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTTACCCACAGCTTCCTGGTGCCTCCTTGCTGACCTGTTGGGA  550

seq1  GCTCTAGGTGAAGGTCACCTCCACTCGAGTACATCTCTACGACCTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGTGAAGGTCACCTCCACTCGAGTACATCTCTACGACCTGTGAC  600

seq1  AAAGAAAGTACACAGCACTCTCACTTCTTGTTGGGCAGGTGTAGAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTACACAGCACTCTCACTTCTTGTTGGGCAGGTGTAGAAGCAG  650

seq1  ATACACTAGGGCAGGCACTAGCTCCCATGGCTCATCTGCAGAAGCAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGGGCAGGCACTAGCTCCCATGGCTCATCTGCAGAAGCAACTG  700

seq1  ACTCAAGTTAACTCTGAAAGTAAACCTGGAAGCAGTGTAGTTTCAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTAACTCTGAAAGTAAACCTGGAAGCAGTGTAGTTTCAGAAAC  750

seq1  TAGGTTTTAGGAAGCAACAGAACACCTTTTTTAAAAAATAAATAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTAGGAAGCAACAGAACACCTTTTTTAAAAAATAAATAAATAAA  800

seq1  AATAAAGATACATGTAAATGATGAAGTTTTAGAAATATAAGTTTAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATACATGTAAATGATGAAGTTTTAGAAATATAAGTTTAAGGCT  850

seq1  TTTGCAGTGCCACATG-CCTGTCTTCTCAGCCCTT-GGGAGGCTGAGGCA  898
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTTGCAGTGCCACATGCCCTGTCTTCTCAGCCCTTGGGGAGGCTGAGGCA  900

seq1  ATCTTGAATTCAAGGCCATCTGCGCTGCACAGTCTGTGGCCATC-TTAGG  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCTTGAATTCAAGGCCATCTGCGCTGCACAGTCTGTGGCCATCTTTAGG  950

seq1  CTACATGAGGCT--ATTTCAGAAAAACAAAACCAAAAAATGTATACGTAC  995
      ||||||||||||   ||||||||||  |||||||||||   |||||||||
seq2  CTACATGAGGCTTATTTTCAGAAAACAAAAACCAAAAATGTTATACGTAC  1000

seq1  ATATCAATTTTACATATAGCTAGATCTAG--TGGTGGATCCAA-TAACAG  1042
      |||||| ||||||||||||||||||||||   ||||||||||| ||||||
seq2  ATATCAGTTTTACATATAGCTAGATCTAGGTGGGTGGATCCAATTAACAG  1050

seq1  TGCCATGAGAAGATTAAAC--ACTCTGAGATACATGTACAATTCTAATAA  1090
      ||||||||||||||||| |   || |||||||||||||||| ||||   |
seq2  TGCCATGAGAAGATTAACCCTCCTGTGAGATACATGTACAA-TCTA--TA  1097

seq1  AGATCAAAGCACTTGGTTTCTGAGTTGA--GAGTGTATATGCCTAGCATG  1138
      ||||| ||||   |||||   || | ||  | || ||||||| |||||||
seq2  AGATCCAAGCCACTGGTTCTGGATTGGAAGGTGTATATATGCTTAGCATG  1147

seq1  TGCAAAGCTCTGGGTTTGAACCCAATAGCACACATACCAAAAA  1181
        |  ||||||||| ||||  || |||||||||||  ||||||
seq2  GCC--AGCTCTGGG-TTGA--CCCATAGCACACATTACAAAAA  1185