BAC Information

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BAC

Clone NameB6Ng01-300K04
Chromosome1 (Build37)
Map Location 193,557,261 - 193,558,398
singlet/doubletsinglet
Overlap geneLpgat1
Upstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneNek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300K04.bB6Ng01-300K04.g
ACCGA095162GA095163
length3601,129
definitionB6Ng01-300K04.b B6Ng01-300K04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgacagatatgatatgatatgatatgatatgatatgatatgatatgata
tacgtgacagtgcctggcaaatacagaagtggatgctcacagtcatccat
tggacggagcacagggtccccaatgaaggagctagagaaaggacccaagg
agctgaaggggtttgcagttgggactaaaccaccaatcaaagaaaacaca
cagagggactcatggctctagctgcatatatagcagaggatggtctagtc
agtcatcaatgggaggagaagcccttggtcctgtgaagattctatgcccc
agtataggggaaggtcaaggccaggaagagggagtgggtgggttggggaa
caggggaagg
gaattcactttgtagaccagactggcatccaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgcaccaccactgcccagct
gtgtttaacttttaagaagctgccaaactgtttttcatagcagctctact
gatttacgttttcatcagaaatggaggaaggttcccgtttcttccttatt
catatttactgtccggagttttaattctcaccatgcaggtggatatgaag
tagagtctccacgtggtttagaatttcattacttactgactaatgctagt
ttcatgtactggcggccatttttgaattctctctggagaactttcccttc
atatctctgcccaatttaaatagattgcttaccttttaaaggtgaggtta
tgctataatttggatgttgtttctttctccaaagatttgtgctttgggag
cttgggccccagagttagtgttggagacaatatggcctttaagaggtggt
gctaagtgggagccccagagttcataggttaagcgtggacaagtcttcag
aagacgttgatgtttgttgtgagactggttcttctcttggaaggatgagt
gaaagcctgagctggttccactgtgtctctctcacatcctctttgccgta
gtgtctacttgttcctgctgttgcaatctgctatgagctagcacagggaa
ggtggagcagcctgcccgtccctgccatttggatctttagcttccaaaat
ggtcaacattttctttataaagttagcctacctctagcattttgttctat
taatgcaaaactgactaatagaagttttataaaggggctggtgagatggc
tcagctggtaagagcactgactgctcttctgaaggtcctgagttcaaatc
ccagcaaccacatggtggctcacaaccatctgtacagatacagtgtactc
atatacataaaataataaatatataaatcttaaaaaaaagaagtttttat
agagtttttgggcacagcatggtggtacatgcctatcccagcacatggga
gaagagacaaacagaatctcttattgagcggtctgtctacatagcaggtt
cagacagagctactcaatgagacctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193557261_193558398
seq2: B6Ng01-300K04.g_66_1194

seq1  GAATTCACTTTGTAGACCAGACTGGCATCCAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGACTGGCATCCAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCAGCT  100

seq1  GTGTTTAACTTTTAAGAAGCTGCCAAACTGTTTTTCATAGCAGCTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAACTTTTAAGAAGCTGCCAAACTGTTTTTCATAGCAGCTCTACT  150

seq1  GATTTACGTTTTCATCAGAAATGGAGGAAGGTTCCCGTTTCTTCCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACGTTTTCATCAGAAATGGAGGAAGGTTCCCGTTTCTTCCTTATT  200

seq1  CATATTTACTGTCCGGAGTTTTAATTCTCACCATGCAGGTGGATATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTACTGTCCGGAGTTTTAATTCTCACCATGCAGGTGGATATGAAG  250

seq1  TAGAGTCTCCACGTGGTTTAGAATTTCATTACTTACTGACTAATGCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTCCACGTGGTTTAGAATTTCATTACTTACTGACTAATGCTAGT  300

seq1  TTCATGTACTGGCGGCCATTTTTGAATTCTCTCTGGAGAACTTTCCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTACTGGCGGCCATTTTTGAATTCTCTCTGGAGAACTTTCCCTTC  350

seq1  ATATCTCTGCCCAATTTAAATAGATTGCTTACCTTTTAAAGGTGAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGCCCAATTTAAATAGATTGCTTACCTTTTAAAGGTGAGGTTA  400

seq1  TGCTATAATTTGGATGTTGTTTCTTTCTCCAAAGATTTGTGCTTTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAATTTGGATGTTGTTTCTTTCTCCAAAGATTTGTGCTTTGGGAG  450

seq1  CTTGGGCCCCAGAGTTAGTGTTGGAGACAATATGGCCTTTAAGAGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCCCAGAGTTAGTGTTGGAGACAATATGGCCTTTAAGAGGTGGT  500

seq1  GCTAAGTGGGAGCCCCAGAGTTCATAGGTTAAGCGTGGACAAGTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGGGAGCCCCAGAGTTCATAGGTTAAGCGTGGACAAGTCTTCAG  550

seq1  AAGACGTTGATGTTTGTTGTGAGACTGGTTCTTCTCTTGGAAGGATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTTGATGTTTGTTGTGAGACTGGTTCTTCTCTTGGAAGGATGAGT  600

seq1  GAAAGCCTGAGCTGGTTCCACTGTGTCTCTCTCACATCCTCTTTGCCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGAGCTGGTTCCACTGTGTCTCTCTCACATCCTCTTTGCCGTA  650

seq1  GTGTCTACTTGTTCCTGCTGTTGCAATCTGCTATGAGCTAGCACAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACTTGTTCCTGCTGTTGCAATCTGCTATGAGCTAGCACAGGGAA  700

seq1  GGTGGAGCAGCCTGCCCGTCCCTGCCATTTGGATCTTTAGCTTCCAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCAGCCTGCCCGTCCCTGCCATTTGGATCTTTAGCTTCCAAAAT  750

seq1  GGTCAACATTTTCTTTATAAAGTTAGCCTACCTCTAGCATTTTGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACATTTTCTTTATAAAGTTAGCCTACCTCTAGCATTTTGTTCTAT  800

seq1  TAATGCAAAACTGACTAATAGAAGTTTTTATAAGGGGCTGGTGAGATGGC  850
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TAATGCAAAACTGACTAATAGAAGTTTTATAAAGGGGCTGGTGAGATGGC  850

seq1  TCAGCTGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATC  900

seq1  CCAGCAACCACATGGTGGCTCACAACCATCTGTACAGATACAGTGTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCTCACAACCATCTGTACAGATACAGTGTACTC  950

seq1  ATATACATAAAATAAATAAATATATAAATCTTAAAAAAAAGAAGTTTTTA  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATACATAAAAT-AATAAATATATAAATCTTAAAAAAAAGAAGTTTTTA  999

seq1  TAAGAGTTTTTGGGCCACAGGCATGGTGGTACATGCCTTAATCCCAGCAC  1050
      | |||||||||||| |||| ||||||||||||||||||  ||||||||||
seq2  T-AGAGTTTTTGGG-CACA-GCATGGTGGTACATGCCT--ATCCCAGCAC  1044

seq1  ATGGGAGGAAGAGACAAACAG-ATCTCT--ATGAGCCGGTCTGGTCTACA  1097
      |||||| |||||||||||||| ||||||   |||| |||||| |||||||
seq2  ATGGGA-GAAGAGACAAACAGAATCTCTTATTGAG-CGGTCT-GTCTACA  1091

seq1  TAGCAAGTTCCAGGACAGAGCTACTCAATGAGACCCTGTTT  1138
      ||||| ||||   |||||||||||||||||||| |||||||
seq2  TAGCAGGTTC--AGACAGAGCTACTCAATGAGA-CCTGTTT  1129