BAC Information

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BAC

Clone NameB6Ng01-300N01
Chromosome1 (Build37)
Map Location 37,960,955 - 38,110,736
singlet/doubletdoublet
Overlap geneGm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30
Downstream geneEG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300N01.bB6Ng01-300N01.g
ACCGA095294GA095295
length1,1171,170
definitionB6Ng01-300N01.b B6Ng01-300N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,109,604 - 38,110,736)(37,960,955 - 37,962,141)
sequence
gaattcagtgatgtgaagaccttgctcaaagagtggatcactactatctc
aggtttgtgtggtagctctgtgattcgagaacaggacctgagcacaatgg
ctcgagccccttgtctaacattacaagctgtaaggcgtgctgggtcctca
cctggggttttcctcctccctagatccgatggaagaagacatcctgcagg
ttgtgagatactgcactgacctcatagaggagaaagacttggaaaaattg
gatctggttataaaatacatgaaaaggtaatttatttaattttttactta
aagaggaaaaaaaaaaagcatgtcccaacagtcaattgagggcatatgga
tagaacaggtttttaaggttcctggttttaaatgccatataataatgttg
acaggaatactaagttaaaaataatcactcccatggttatatgtccaata
cacaagtgaccatgaaatgtttctgagtgccctaataggccttttaaacc
aagtttattttcttaacacttggttttactgtctgggctggcctttaaac
tcagtggctgagattaaaggcgtgagccactgtatccagttcaaaaaaaa
aaagaaaaaaaaaaccaagaatgaagctaagtctgaaggacaaccatgcg
tgctggagctttctcttcagtggtgcctcttcctcaccttcaggttgatg
cagcagtcggtggagtctgtatggaacatggcgtttgactttattcttga
caatgttcaggtggttttacagcagacttatggaagcacactgaaagtga
cctgactgctgtgcagagggcctggggctctctgcgctgtgccagcagtg
cttgtgaggtatttgcaaagtgcatgatagtgatgctctgagttttcata
attctacatttctttttaagcaagtgttttgtacatttcttttcaaaaag
tgccaatttgtcagtattgcatgtaaataattgtgtattctttactgtag
catagattctatttacaaacgtttgtttatagtttttatgatttttacag
tgagtgtttacagttgtttaataaagaactgaatggtaattgtacagttt
tttttccttgaatccct
gaattctagcagctggcaaatgaattgaatcactaggcttttagatctcg
cttcagaaacaaggaactagtgtgaatcggaagagagtttggccacacag
ttaatgacaaaccttggtaccttcctgaaggaagcagttttaggaatcct
gatgttgttctgctctttacagaattgtaagaaagatgggaattgtattg
aaacatgggttcatgacagagacacagaagaaagcatgctggctccgtga
actgcctgccttcctgaccagaacttttctatatattacaaacaaagaac
agaccgcctttgcttttaagcaaggggctgcacagtgttttaggaatcta
agagaaaggacagtggtcttatgtcaattataaaagaaatatagaggaag
ggaaggaggaattagacagaggtcagagaaattgaacctttgtagaaatc
caagcttgatacaatggggagtaggaaataacttttgatctattaatttt
gtgccaaactgaaacagaatcaaattcaaaatgtcatcctgtctggtatt
tctgcaaccacaaggctttctgacaccaatcttaaggaagaagatactta
gtttaaagaaaattgggggctggagagatggctcaatggttaagagtacc
gactgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtgg
ctcccagacttccctaatgagatctgacgccctcttctggtgcatctgaa
gacagctacagtgtacttatgtataataataaataaatctttaaaaaaaa
agaagaaaattgatttcatcataatgttaggttttagttctcataaaatt
actgtttgcttgctgtgttcctctttcactattcttgtgtaatcaaggaa
ggctttagaagaaaatgtatcttgaaagctggtaatcaatgaataaagtt
cctgaggaaatgattttgtgtctaaatatagcctgtgagaagacacaggt
tgtcagactagcagccatacgagatgtgcttcatctctcatgaaacaaac
tgatggtgttctccctctgagctcctcgatgctcttacattcggcaggct
gcaagccctggcttcagcaagggactgtcctgcaatctagactaacctgc
atattctgatgctaggttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38109604_38110736
seq2: B6Ng01-300N01.b_44_1160 (reverse)

seq1  AGGGATTCACAAGAAAAAAAAAACCTGTACAAAATATACATACAGTTCTT  50
      |||||||  |||| ||||||||  ||||||  |||   ||| ||||||||
seq2  AGGGATT--CAAGGAAAAAAAA--CTGTAC--AATTACCATTCAGTTCTT  44

seq1  TATTAAACAACTGTAAACACTTCACTGTAAAAATCCATAAAACTTTATAA  100
      |||||||||||||||||||| ||||||||||||||   |||||  |||||
seq2  TATTAAACAACTGTAAACAC-TCACTGTAAAAATCATAAAAAC--TATAA  91

seq1  ACAAACGTTTTGTAAATAGAATCTATGCTACAAGTAAAAGAATTAACACA  150
      ||||||| ||||||||||||||||||||||| ||| |||||||  |||||
seq2  ACAAACG-TTTGTAAATAGAATCTATGCTAC-AGT-AAAGAAT--ACACA  136

seq1  ATTATTTACATGCAATACTGACAAATTTGGCACTTTTTTGAAAAGAAATG  200
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  ATTATTTACATGCAATACTGACAAA-TTGGCAC-TTTTTGAAAAGAAATG  184

seq1  TACAAAACACTTGCTTAAAAAGAAATGTAGAATTATGAAAACTCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACACTTGCTTAAAAAGAAATGTAGAATTATGAAAACTCAGAGCA  234

seq1  TCACTATCATGCACTTTGCAAATACCTCACAAGCACTGCTGGCACAGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCATGCACTTTGCAAATACCTCACAAGCACTGCTGGCACAGCGC  284

seq1  AGAGAGCCCCAGGCCCTCTGCACAGCAGTCAGGTCACTTTCAGTGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCCCAGGCCCTCTGCACAGCAGTCAGGTCACTTTCAGTGTGCTT  334

seq1  CCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAAA  384

seq1  CGCCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGTGA  434

seq1  GGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCA  484

seq1  GACTTAGCTTCATTCTTGGTTTTTTTTTTCTTTTTTTTTTTGAACTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGCTTCATTCTTGGTTTTTTTTTTCTTTTTTTTTTTGAACTGGAT  534

seq1  ACAGTGGCTCACGCCTTTAATCTCAGCCACTGAGTTTAAAGGCCAGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCTCACGCCTTTAATCTCAGCCACTGAGTTTAAAGGCCAGCCCA  584

seq1  GACAGTAAAACCAAGTGTTAAGAAAATAAACTTGGTTTAAAAGGCCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAAACCAAGTGTTAAGAAAATAAACTTGGTTTAAAAGGCCTATT  634

seq1  AGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATATAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATATAACCA  684

seq1  TGGGAGTGATTATTTTTAACTTAGTATTCCTGTCAACATTATTATATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGATTATTTTTAACTTAGTATTCCTGTCAACATTATTATATGGC  734

seq1  ATTTAAAACCAGGAACCTTAAAAACCTGTTCTATCCATATGCCCTCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACCAGGAACCTTAAAAACCTGTTCTATCCATATGCCCTCAATT  784

seq1  GACTGTTGGGACATGCTTTTTTTTTTTCCTCTTTAAGTAAAAAATTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGGGACATGCTTTTTTTTTTTCCTCTTTAAGTAAAAAATTAAAT  834

seq1  AAATTACCTTTTCATGTATTTTATAACCAGATCCAATTTTTCCAAGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCTTTTCATGTATTTTATAACCAGATCCAATTTTTCCAAGTCTT  884

seq1  TCTCCTCTATGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTATGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCT  934

seq1  TCCATCGGATCTAGGGAGGAGGAAAACCCCAGGTGAGGACCCAGCACGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGGATCTAGGGAGGAGGAAAACCCCAGGTGAGGACCCAGCACGCC  984

seq1  TTACAGCTTGTAATGTTAGACAAGGGGCTCGAGCCATTGTGCTCAGGTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTGTAATGTTAGACAAGGGGCTCGAGCCATTGTGCTCAGGTCC  1034

seq1  TGTTCTCGAATCACAGAGCTACCACACAAACCTGAGATAGTAGTGATCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCGAATCACAGAGCTACCACACAAACCTGAGATAGTAGTGATCCA  1084

seq1  CTCTTTGAGCAAGGTCTTCACATCACTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGCAAGGTCTTCACATCACTGAATTC  1117

seq1: chr1_37960955_37962141
seq2: B6Ng01-300N01.g_68_1237

seq1  GAATTCTAGCAGCTGGCAAATGAATTGAATCACTAGGCTTTTAGATCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCAGCTGGCAAATGAATTGAATCACTAGGCTTTTAGATCTCG  50

seq1  CTTCAGAAACAAGGAACTAGTGTGAATCGGAAGAGAGTTTGGCCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAACAAGGAACTAGTGTGAATCGGAAGAGAGTTTGGCCACACAG  100

seq1  TTAATGACAAACCTTGGTACCTTCCTGAAGGAAGCAGTTTTAGGAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAAACCTTGGTACCTTCCTGAAGGAAGCAGTTTTAGGAATCCT  150

seq1  GATGTTGTTCTGCTCTTTACAGAATTGTAAGAAAGATGGGAATTGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTTCTGCTCTTTACAGAATTGTAAGAAAGATGGGAATTGTATTG  200

seq1  AAACATGGGTTCATGACAGAGACACAGAAGAAAGCATGCTGGCTCCGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGTTCATGACAGAGACACAGAAGAAAGCATGCTGGCTCCGTGA  250

seq1  ACTGCCTGCCTTCCTGACCAGAACTTTTCTATATATTACAAACAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGCCTTCCTGACCAGAACTTTTCTATATATTACAAACAAAGAAC  300

seq1  AGACCGCCTTTGCTTTTAAGCAAGGGGCTGCACAGTGTTTTAGGAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCCTTTGCTTTTAAGCAAGGGGCTGCACAGTGTTTTAGGAATCTA  350

seq1  AGAGAAAGGACAGTGGTCTTATGTCAATTATAAAAGAAATATAGAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGACAGTGGTCTTATGTCAATTATAAAAGAAATATAGAGGAAG  400

seq1  GGAAGGAGGAATTAGACAGAGGTCAGAGAAATTGAACCTTTGTAGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGAATTAGACAGAGGTCAGAGAAATTGAACCTTTGTAGAAATC  450

seq1  CAAGCTTGATACAATGGGGAGTAGGAAATAACTTTTGATCTATTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGATACAATGGGGAGTAGGAAATAACTTTTGATCTATTAATTTT  500

seq1  GTGCCAAACTGAAACAGAATCAAATTCAAAATGTCATCCTGTCTGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAACTGAAACAGAATCAAATTCAAAATGTCATCCTGTCTGGTATT  550

seq1  TCTGCAACCACAAGGCTTTCTGACACCAATCTTAAGGAAGAAGATACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACCACAAGGCTTTCTGACACCAATCTTAAGGAAGAAGATACTTA  600

seq1  GTTTAAAGAAAATTGGGGGCTGGAGAGATGGCTCAATGGTTAAGAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAAAATTGGGGGCTGGAGAGATGGCTCAATGGTTAAGAGTACC  650

seq1  GACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG  700

seq1  CTCCCAGACTTCCCTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACTTCCCTAATGAGATCTGACGCCCTCTTCTGGTGCATCTGAA  750

seq1  GACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTTAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTTAAAAAAAA  800

seq1  AGAAGAAAATTGATTTCATCATAATGTTAGGTTTTAGTTCTCATAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAATTGATTTCATCATAATGTTAGGTTTTAGTTCTCATAAAATT  850

seq1  ACTGTTTGCTTGCTGTGTTCCTCTTTCACTATTCTTGTGTAATCAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCTTGCTGTGTTCCTCTTTCACTATTCTTGTGTAATCAAGGAA  900

seq1  GGCTTTAGAAGAAAATGTATCTTGAAAAGCTGGGTAATCAATGAATAAAG  950
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GGCTTTAGAAGAAAATGTATCTTG-AAAGCT-GGTAATCAATGAATAAAG  948

seq1  TTCCTGAGGAAATGATTTTGTGTCTAAATATAGCCTGTGAG-AGACACAG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCTGAGGAAATGATTTTGTGTCTAAATATAGCCTGTGAGAAGACACAG  998

seq1  GTTGTCAGACTAGGCCAAGCCATACCGAGATGTGCTTCCATCTCTCATGA  1049
      |||||||||||||    ||||||| |||||||||||| ||||||||||||
seq2  GTTGTCAGACTAG---CAGCCATA-CGAGATGTGCTT-CATCTCTCATGA  1043

seq1  AACAAAACTGGATGGTG-TCTCCCTTCTGAAGCTTCCCTCGATGCTCTTA  1098
      ||| ||||| ||||||| |||||| |||| ||||  ||||||||||||||
seq2  AAC-AAACT-GATGGTGTTCTCCC-TCTG-AGCT--CCTCGATGCTCTTA  1087

seq1  CATCCGCCA-GCTGCAAGCCCTGGCCTCAGCAGGGGCTGGTCCCTGGCAA  1147
      ||| || || ||||||||||||||| |||||| |||   ||||   ||||
seq2  CATTCGGCAGGCTGCAAGCCCTGGCTTCAGCAAGGGACTGTCC--TGCAA  1135

seq1  TCTTAGGCACTAACTCTGCATATTCTGTTTGCTAGTTTCC  1187
      || |||  |||||| ||||||||||||  |||||| ||||
seq2  TC-TAG--ACTAAC-CTGCATATTCTG-ATGCTAGGTTCC  1170