BAC Information

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BAC

Clone NameB6Ng01-301F12
Chromosome1 (Build37)
Map Location 91,325,787 - 91,437,296
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneGlrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301F12.bB6Ng01-301F12.g
ACCGA095678GA095679
length9941,016
definitionB6Ng01-301F12.b B6Ng01-301F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,436,314 - 91,437,296)(91,325,787 - 91,326,798)
sequence
gaattcaccccaaatctagatgccaactaaagctcagggctgtaacatag
acagctgttctccatacctggcttggtctcctgctccacgggttagcacc
cttggcctccttgttgagagaactcacagagggggtctctaattacacct
gcatggggctaaatgtgcaggcattgtaaatcacagcctgaaggggatga
gagccacccaggtggcagagtggctatgcagccagcttcaggaggactac
tcctgagtgcccattcattatgacaatgcttcggatgatgtgacccagaa
atactgtccaccgctcaccctgacttcacaaggctcaccatctgaaaggg
tgaatttcttgcctccggagtgttatgtgggtcacaggggctcttactct
ggagcatcagcctggaaaggcgtctgggtaacagtgaggtgccaggagcc
gggtgtgggacacagcaagtggcaaaataacaagtgaggctgaggtcaaa
tgatagaatcttcacccaggaactgtggccgatcacggttccaagcctag
aagaaagccaatatccagggaggctacaaggtccaggagagaggaagact
cctgtgggagtcagatgaaaggaccagaaggagaacaaggggaggaaggg
ctccacagaggtgaggccttcagaggatatcagcagccctactgtgtgtc
gctcctctctacctagactcagctccagcaacatagagactttcaaggaa
gcccactgccttaaaaaaaaaaaaactactcagaaaaaaaaaatgggggg
aggttgcatgctctggctagagtgatcttaaaccccaatacatagtagtt
taagggaggggcttttcgaaggctatttgggattagatgagcccataaag
atgccggccccccacatcaaggattagtgtttttatgaaagaacacaagg
tggctaaaagccacacttccctgggcgctagcgccatctcctcc
gaattcctgattctcctgactcagccttctgagagctgggatgacaggca
tgcaccaccgcacctgcccagcttagtgatggctttttaaaatgcatcag
tttggggttttgtatcatcaataaagaacgttcactagtgggccagcaag
agagctcagtgagtaatgggtgcttgctaacaagcctgaccatcgacttt
gacccttctttcacacaatggaaggagacaatggcacccacaagtgttcc
tctgacctctacacacacacacacacacacacacacacacacacacacac
acacacaggcaagcacacaggcaagcacacacgcacaaatgcatgctgtg
ctgtgattgttctccagttggtggaactgtttgtgaaggattaggaggtt
tggccttgttggaggatgcgtgtcactgaagttcaactttgaggtttcaa
aagcccatgccatttccagctggctttctctgcctcaagcctgttgtctc
aagatgtgagctctcaactaccgctccagcgccatgcctgcctgcctgcc
tgtggccatgctccccaccaggatgactgtggactctaaccctctgaaac
tgtagtccccaaagaaactcttgtataaattatcttagtcttggtgtttc
atcatagcaatagaaaaatgactaagacacatacacataaagctaattaa
aaaatacaaaaataacattcataatcgttatcctgccatttgtagctcag
gcacgctttataaattttctgctgtttcaagtttccagttggtggcactt
tgtatagcgagcagtccatggactagttagaaacagcctccgactttaat
ccggttcagagttagaacctacattcctgtcccttgcaaccacctcccag
gctcacttaaagaacagttagcacgtcttttcaggggtgcggtcacaaaa
ttaattactgagtcttgaacaaatgctgctgaagcaagcagattcagagc
ggctgagtacagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91436314_91437296
seq2: B6Ng01-301F12.b_45_1038 (reverse)

seq1  GGAGGAGAGGGCGCTAGCG-CCAGGG-AGTGT-GCTCTTAG-CACCTTGG  46
      |||||||| |||||||||| |||||| ||||| ||| |||| ||||||| 
seq2  GGAGGAGATGGCGCTAGCGCCCAGGGAAGTGTGGCTTTTAGCCACCTTGT  50

seq1  TGTCTGTCATAAAAACACTAAT-CTTGTTGTGGGGGG-CGGCATCTTTAT  94
        ||| |||||||||||||||| |||| ||||||||| ||||||||||||
seq2  GTTCTTTCATAAAAACACTAATCCTTGATGTGGGGGGCCGGCATCTTTAT  100

seq1  GGCTTCATCTAATCCC-AATAGCCTTCGAAAAGCCC--TCCTTAAACTAC  141
      ||  |||||||||||| |||||||||||||||||||   |||||||||||
seq2  GGGCTCATCTAATCCCAAATAGCCTTCGAAAAGCCCCTCCCTTAAACTAC  150

seq1  TATGTATTGGGGTTTTAGATCACTCTAGCCAGAGCATGCAACCTTCCCCC  191
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TATGTATTGGGGTTTAAGATCACTCTAGCCAGAGCATGCAACCTCCCCCC  200

seq1  A-TTTTTTTTTCTGAGTAGTTTTTTTTTTTTTAAGGCAGTGGGCTTCCTT  240
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCTGAGTAGTTTTTTTTTTTTTAAGGCAGTGGGCTTCCTT  250

seq1  G-AAGTCTCTATGTTGCTGGAGCTGAGTCTAGGTAGAGAGGAGCGACACA  289
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTCTATGTTGCTGGAGCTGAGTCTAGGTAGAGAGGAGCGACACA  300

seq1  CAGTAGGGCTGCTGATATCCTCTGAAGGCCTCACCTCTGTGGAGCCCTTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGCTGCTGATATCCTCTGAAGGCCTCACCTCTGTGGAGCCCTTC  350

seq1  CTCCCCTTGTTCTCCTTCTGGTCCTTTCATCTGACTCCCACAGGAGTCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGTTCTCCTTCTGGTCCTTTCATCTGACTCCCACAGGAGTCTT  400

seq1  CCTCTCTCCTGGACCTTGTAGCCTCCCTGGATATTGGCTTTCTTCTAGGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTGGACCTTGTAGCCTCCCTGGATATTGGCTTTCTTCTAGGC  450

seq1  TTGGAACCGTGATCGGCCACAGTTCCTGGGTGAAGATTCTATCATTTGAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCGTGATCGGCCACAGTTCCTGGGTGAAGATTCTATCATTTGAC  500

seq1  CTCAGCCTCACTTGTTATTTTGCCACTTGCTGTGTCCCACACCCGGCTCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCACTTGTTATTTTGCCACTTGCTGTGTCCCACACCCGGCTCC  550

seq1  TGGCACCTCACTGTTACCCAGACGCCTTTCCAGGCTGATGCTCCAGAGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTCACTGTTACCCAGACGCCTTTCCAGGCTGATGCTCCAGAGTA  600

seq1  AGAGCCCCTGTGACCCACATAACACTCCGGAGGCAAGAAATTCACCCTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCTGTGACCCACATAACACTCCGGAGGCAAGAAATTCACCCTTT  650

seq1  CAGATGGTGAGCCTTGTGAAGTCAGGGTGAGCGGTGGACAGTATTTCTGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTGAGCCTTGTGAAGTCAGGGTGAGCGGTGGACAGTATTTCTGG  700

seq1  GTCACATCATCCGAAGCATTGTCATAATGAATGGGCACTCAGGAGTAGTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCATCCGAAGCATTGTCATAATGAATGGGCACTCAGGAGTAGTC  750

seq1  CTCCTGAAGCTGGCTGCATAGCCACTCTGCCACCTGGGTGGCTCTCATCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGCTGGCTGCATAGCCACTCTGCCACCTGGGTGGCTCTCATCC  800

seq1  CCTTCAGGCTGTGATTTACAATGCCTGCACATTTAGCCCCATGCAGGTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGCTGTGATTTACAATGCCTGCACATTTAGCCCCATGCAGGTGT  850

seq1  AATTAGAGACCCCCTCTGTGAGTTCTCTCAACAAGGAGGCCAAGGGTGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGACCCCCTCTGTGAGTTCTCTCAACAAGGAGGCCAAGGGTGCT  900

seq1  AACCCGTGGAGCAGGAGACCAAGCCAGGTATGGAGAACAGCTGTCTATGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGTGGAGCAGGAGACCAAGCCAGGTATGGAGAACAGCTGTCTATGT  950

seq1  TACAGCCCTGAGCTTTAGTTGGCATCTAGATTTGGGGTGAATTC  983
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCCTGAGCTTTAGTTGGCATCTAGATTTGGGGTGAATTC  994

seq1: chr1_91325787_91326798
seq2: B6Ng01-301F12.g_67_1082

seq1  GAATTCCTGATTCTCCTGACTCAGCCTTCTGAGAGCTGGGATGACAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCTCCTGACTCAGCCTTCTGAGAGCTGGGATGACAGGCA  50

seq1  TGCACCACCGCACCTGCCCAGCTTAGTGATGGCTTTTTAAAATGCATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCGCACCTGCCCAGCTTAGTGATGGCTTTTTAAAATGCATCAG  100

seq1  TTTGGGGTTTTGTATCATCAATAAAGAACGTTCACTAGTGGGCCAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTTTGTATCATCAATAAAGAACGTTCACTAGTGGGCCAGCAAG  150

seq1  AGAGCTCAGTGAGTAATGGGTGCTTGCTAACAAGCCTGACCATCGACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGTGAGTAATGGGTGCTTGCTAACAAGCCTGACCATCGACTTT  200

seq1  GACCCTTCTTTCACACAATGGAAGGAGACAATGGCACCCACAAGTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCTTTCACACAATGGAAGGAGACAATGGCACCCACAAGTGTTCC  250

seq1  TCTGACCTCTACACACACACACACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCTACACACACACACACACACACACACACACACACACACACAC  300

seq1  ACACACAGGCAAGCACACAGGCAAGCACACACGCACAAATGCATGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGCAAGCACACAGGCAAGCACACACGCACAAATGCATGCTGTG  350

seq1  CTGTGATTGTTCTCCAGTTGGTGGAACTGTTTGTGAAGGATTAGGAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTGTTCTCCAGTTGGTGGAACTGTTTGTGAAGGATTAGGAGGTT  400

seq1  TGGCCTTGTTGGAGGATGCGTGTCACTGAAGTTCAACTTTGAGGTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTTGGAGGATGCGTGTCACTGAAGTTCAACTTTGAGGTTTCAA  450

seq1  AAGCCCATGCCATTTCCAGCTGGCTTTCTCTGCCTCAAGCCTGTTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATGCCATTTCCAGCTGGCTTTCTCTGCCTCAAGCCTGTTGTCTC  500

seq1  AAGATGTGAGCTCTCAACTACCGCTCCAGCGCCATGCCTGCCTGCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGAGCTCTCAACTACCGCTCCAGCGCCATGCCTGCCTGCCTGCC  550

seq1  TGTGGCCATGCTCCCCACCAGGATGACTGTGGACTCTAACCCTCTGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATGCTCCCCACCAGGATGACTGTGGACTCTAACCCTCTGAAAC  600

seq1  TGTAGTCCCCAAAGAAACTCTTGTATAAATTATCTTAGTCTTGGTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCCCAAAGAAACTCTTGTATAAATTATCTTAGTCTTGGTGTTTC  650

seq1  ATCATAGCAATAGAAAAATGACTAAGACACATACACATAAAGCTAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCAATAGAAAAATGACTAAGACACATACACATAAAGCTAATTAA  700

seq1  AAAATACAAAAATAACATTCATAATCGTTATCCTGCCATTTGTAGCCCAG  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAATACAAAAATAACATTCATAATCGTTATCCTGCCATTTGTAGCTCAG  750

seq1  GCACGCTTTATAAA-TTTCTGCTGTTTCAAGTTTCCAGTTGGTGGCACTT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCACGCTTTATAAATTTTCTGCTGTTTCAAGTTTCCAGTTGGTGGCACTT  800

seq1  TGTATAGCGAGCAGTCCATGGACTAGTTAGAAACAGCCTCCGACTTTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCGAGCAGTCCATGGACTAGTTAGAAACAGCCTCCGACTTTAAT  850

seq1  CCGGGTTCAGAGTTAGAACCTACATTCCTGTCCCTTGCAACCACCTCCCA  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-GGTTCAGAGTTAGAACCTACATTCCTGTCCCTTGCAACCACCTCCCA  899

seq1  GGCTCACTTAAGAACCAGTTAGCAGGCCTTTCCAGGGGTGCGGTCACAAA  949
      |||||||||||  | ||||||||| | |||| ||||||||||||||||||
seq2  GGCTCACTTAAAGAACAGTTAGCACGTCTTTTCAGGGGTGCGGTCACAAA  949

seq1  A-TAATTACTGGGT-TTGAACAAA-GCTGCTGAAGCAGGCAGATTCAGAG  996
      | ||||||||| || ||||||||| |||||||||||| ||||||||||||
seq2  ATTAATTACTGAGTCTTGAACAAATGCTGCTGAAGCAAGCAGATTCAGAG  999

seq1  C-GCTGAGTACAGAGTG  1012
      | |||||||||||||||
seq2  CGGCTGAGTACAGAGTG  1016