BAC Information

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BAC

Clone NameB6Ng01-301L21
Chromosome1 (Build37)
Map Location 62,199,432 - 62,319,771
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301L21.bB6Ng01-301L21.g
ACCGA095975GA095976
length1,1341,124
definitionB6Ng01-301L21.b B6Ng01-301L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,199,432 - 62,200,569)(62,318,641 - 62,319,771)
sequence
gaattcatcagacactttgtttccttaatgctgctctcaactttccagcc
aggacccagatctttaccgttttcagtttggagcagaagagtaactgaga
tagccatggctctttatctgacatcttgttggcgtgaatgttaaacaata
ggaacatgtttacaatcatgttataataggaacatgtttccatgaaggtg
gtgcttgcttcaagttcatcatttcctctggcaatttgtctctctctttg
ggattaaaggagccaataattgttcacggatattattttcatctttacaa
atacttgttagctccactgcgtatgactcggaggcttccagtgcatttgt
gcatttcagtcatacacactcctattagtgcttctcgctcatcccttcct
taatctgcgctaggttaggcaggtcagactttctatttctttctataata
cattttctctggtttttgcaacctccctttctgtcttaaaggtagaaata
aataaataaaccagaaggtgaaaacttggaattgttccattgagtccaac
tgatgcaagctttgatttatattgctttgaacatgcccgactgtgttact
aactttgccttccctgacattataaactgcaatccctgtgcattttctaa
taaatatttttattccatgttttcccttttctggagagaaaaccctaact
tcaagcctaagcatagctggagttatttctgtgtgtttatggtctgtaca
gtcattttcaagaaagtctcattggggagagatttcgttctgtgaacctc
gtttttatctctgttgatttctgcagattaagtgtgaagttggtttagca
gtgagttcttttctaacttttggttttcaagaaagattcaaattgggagc
cttttaatgtgcttcttttgtggatctttgcacacaccagcaagccctat
actctgtgccttcatcataattacagctaattgataagtcagcaagggca
ttgtgatggcttgatgtacttcatctggttttacctgagacttactgtgc
tcctgttttgctctgcccagtgaatatgacgagaagctggtggcaattct
gggaagagacccccttggggatccacgtggtgcc
gaattctttagaacactgaaataaactatttttaaaaacactgtggaaaa
atccaaatggatgacaggcacaaaaattaggggtctttctccaaatattc
tctgacacagatgcctatctttaggatcaacgacaaatgaacaaacataa
tggaaaagagagggtgcggcaatgacttaattaatagaacacattttatt
taaaaggttaaatttggaacaatcatcttttctgcacatgcttggtgctg
ggaagcaatttaaataacagtggcaaatgagaaaatgaggtaaaattaca
cacaccaccaattttttaaatggcaagtattataattaatacccaacttc
ctttataacccacatcaccttagagtgactattagttatctcccgggact
ggagcttaagtgtagttgttcaattgcattatattgagatagtgcaggga
ctgaaatggtagcaacatgattcacaacaggtctaaacttttaaatgaaa
ggcttgtataagaaactgaaaattaagttggcctcatgcatggaaggtct
tctattccaagacagcaaagaagacaaagtgtcatggaacagagttctga
tggagaagaccctgtggttttacattctggttccaatggaaggttgcttt
acatttctttcttcataaagttctggagttcattgtgttggattccttaa
ccttcaattttacacaaggactgcaactatttgctcttgggtatattcaa
ggaatattctagcaattgaagtgatgtgaacgaaatgttgagtccttttg
aagaagtaattcaaagacattttcactaccaccactgttctcactgtagc
cttattaaaagccaggggagattatgaagttgccttttttgagatttctc
tggctttctttagctaatgagatttctatactaacctgtttcctgacact
caacacagatcgatggacactatttggcttgttgccacaggtgctaataa
agagacactatttgctttggatgtttgctgattccttgctgatttcctca
gactgcatgggaattcagcagcatgatgtctgtgttttctatcttttcaa
gtctttgagtctagtctctatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_62199432_62200569
seq2: B6Ng01-301L21.b_43_1176

seq1  GAATTCATCAGACACTTTGTTTCCTTAATGCTGCTCTCAACTTTCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGACACTTTGTTTCCTTAATGCTGCTCTCAACTTTCCAGCC  50

seq1  AGGACCCAGATCTTTACCGTTTTCAGTTTGGAGCAGAAGAGTAACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAGATCTTTACCGTTTTCAGTTTGGAGCAGAAGAGTAACTGAGA  100

seq1  TAGCCATGGCTCTTTATCTGACATCTTGTTGGCGTGAATGTTAAACAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGGCTCTTTATCTGACATCTTGTTGGCGTGAATGTTAAACAATA  150

seq1  GGAACATGTTTACAATCATGTTATAATAGGAACATGTTTCCATGAAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGTTTACAATCATGTTATAATAGGAACATGTTTCCATGAAGGTG  200

seq1  GTGCTTGCTTCAAGTTCATCATTTCCTCTGGCAATTTGTCTCTCTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTTCAAGTTCATCATTTCCTCTGGCAATTTGTCTCTCTCTTTG  250

seq1  GGATTAAAGGAGCCAATAATTGTTCACGGATATTATTTTCATCTTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGAGCCAATAATTGTTCACGGATATTATTTTCATCTTTACAA  300

seq1  ATACTTGTTAGCTCCACTGCGTATGACTCGGAGGCTTCCAGTGCATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTTAGCTCCACTGCGTATGACTCGGAGGCTTCCAGTGCATTTGT  350

seq1  GCATTTCAGTCATACACACTCCTATTAGTGCTTCTCGCTCATCCCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAGTCATACACACTCCTATTAGTGCTTCTCGCTCATCCCTTCCT  400

seq1  TAATCTGCGCTAGGTTAGGCAGGTCAGACTTTCTATTTCTTTCTATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCGCTAGGTTAGGCAGGTCAGACTTTCTATTTCTTTCTATAATA  450

seq1  CATTTTCTCTGGTTTTTGCAACCTCCCTTTCTGTCTTAAAGGTAGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCTGGTTTTTGCAACCTCCCTTTCTGTCTTAAAGGTAGAAATA  500

seq1  AATAAATAAACCAGAAGGTGAAAACTTGGAATTGTTCCATTGAGTCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAACCAGAAGGTGAAAACTTGGAATTGTTCCATTGAGTCCAAC  550

seq1  TGATGCAAGCTTTGATTTATATTGCTTTGAACATGCCCGACTGTGTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAAGCTTTGATTTATATTGCTTTGAACATGCCCGACTGTGTTACT  600

seq1  AACTTTGCCTTCCCTGACATTATAAACTGCAATCCCTGTGCATTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCCTTCCCTGACATTATAAACTGCAATCCCTGTGCATTTTCTAA  650

seq1  TAAATATTTTTATTCCATGTTTTCCCTTTTCTGGAGAGAAAACCCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTTATTCCATGTTTTCCCTTTTCTGGAGAGAAAACCCTAACT  700

seq1  TCAAGCCTAAGCATAGCTGGAGTTATTTCTGTGTGTTTATGGTCTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTAAGCATAGCTGGAGTTATTTCTGTGTGTTTATGGTCTGTACA  750

seq1  GTCATTTTCAAGAAAGTCTCATTGGGGAGAGATTTCGTTCTGTGAACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTCAAGAAAGTCTCATTGGGGAGAGATTTCGTTCTGTGAACCTC  800

seq1  GTTTTTATCTCTGTTGATTTCTGCAGATTAAGTGTGAAGTTGGTTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATCTCTGTTGATTTCTGCAGATTAAGTGTGAAGTTGGTTTAGCA  850

seq1  GTGAGTTCTTTTCTAACTTTTGGTTTTCAAGAAAGATTCAAATTGGGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTTTTCTAACTTTTGGTTTTCAAGAAAGATTCAAATTGGGAGC  900

seq1  CTTTTAATGTGCTTCTTTTGTGGATCTTTTGCACACACCAGCAAGCCCTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTAATGTGCTTCTTTTGTGGATC-TTTGCACACACCAGCAAGCCCTA  949

seq1  TACTCCTGTGCCTTCAATCATAATTACAGCTAATTGATAAAGTCAGCAAG  1000
      |||| |||||||||| |||||||||||||||||||||| |||||||||||
seq2  TACT-CTGTGCCTTC-ATCATAATTACAGCTAATTGAT-AAGTCAGCAAG  996

seq1  GGCATTGTGATGGCTTAATGTACTTCATCTGGTTTTTACCTGAGACTTAC  1050
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  GGCATTGTGATGGCTTGATGTACTTCATCTGG-TTTTACCTGAGACTTAC  1045

seq1  TGTGCTCCTGTTTTGCTCTGCCCAGTG-ATATGACGAG-AGCTGTGGAGA  1098
      ||||||||||||||||||||||||||| |||||||||| |||||  |  |
seq2  TGTGCTCCTGTTTTGCTCTGCCCAGTGAATATGACGAGAAGCTGGTGGCA  1095

seq1  TTTCTGGGGAAGGAGACCCCC-TGGGGATCCACGTGGTGCC  1138
       |||||||  | ||||||||| |||||||||||||||||||
seq2  ATTCTGGG--AAGAGACCCCCTTGGGGATCCACGTGGTGCC  1134

seq1: chr1_62318641_62319771
seq2: B6Ng01-301L21.g_66_1189 (reverse)

seq1  TCCATAGA-CTTAGACTTCAAAGACTTTGAAAGAATTAG-AAACACAGAC  48
      ||||||||   ||||| ||||||||||  |||||  ||| ||||||||| 
seq2  TCCATAGAGACTAGAC-TCAAAGACTTGAAAAGA--TAGAAAACACAGA-  46

seq1  CATCATGGCTGCTGAATT-CCATGCAAGTCTGAGGAAATCAGCAGGAAAT  97
      |||||| ||||||||||| |||||| |||||||||||||||||| | |||
seq2  CATCAT-GCTGCTGAATTCCCATGC-AGTCTGAGGAAATCAGCAAGGAAT  94

seq1  CAGCAAACATCCAAAGCAAATAGTGTCCTCTTTATTAAGCACCTGTGGCA  147
      |||||||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  CAGCAAACATCCAAAGCAAATAGTGT-CTCTTTATT-AGCACCTGTGGC-  141

seq1  AACAAGCCAAATAGTGTCCATCGATCTTGTGTTGAGTGTCAGGAAACAGG  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACAAGCCAAATAGTGTCCATCGATC-TGTGTTGAGTGTCAGGAAACAGG  190

seq1  TTAGTATAGAAATCTCATTAGCTAAAGAAAGCCAGAGAAATCTCAAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATAGAAATCTCATTAGCTAAAGAAAGCCAGAGAAATCTCAAAAAA  240

seq1  GGCAACTTCATAATCTCCCCTGGCTTTTAATAAGGCTACAGTGAGAACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTCATAATCTCCCCTGGCTTTTAATAAGGCTACAGTGAGAACAG  290

seq1  TGGTGGTAGTGAAAATGTCTTTGAATTACTTCTTCAAAAGGACTCAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAGTGAAAATGTCTTTGAATTACTTCTTCAAAAGGACTCAACAT  340

seq1  TTCGTTCACATCACTTCAATTGCTAGAATATTCCTTGAATATACCCAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTCACATCACTTCAATTGCTAGAATATTCCTTGAATATACCCAAGA  390

seq1  GCAAATAGTTGCAGTCCTTGTGTAAAATTGAAGGTTAAGGAATCCAACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGTTGCAGTCCTTGTGTAAAATTGAAGGTTAAGGAATCCAACAC  440

seq1  AATGAACTCCAGAACTTTATGAAGAAAGAAATGTAAAGCAACCTTCCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTCCAGAACTTTATGAAGAAAGAAATGTAAAGCAACCTTCCATT  490

seq1  GGAACCAGAATGTAAAACCACAGGGTCTTCTCCATCAGAACTCTGTTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGAATGTAAAACCACAGGGTCTTCTCCATCAGAACTCTGTTCCA  540

seq1  TGACACTTTGTCTTCTTTGCTGTCTTGGAATAGAAGACCTTCCATGCATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTTGTCTTCTTTGCTGTCTTGGAATAGAAGACCTTCCATGCATG  590

seq1  AGGCCAACTTAATTTTCAGTTTCTTATACAAGCCTTTCATTTAAAAGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACTTAATTTTCAGTTTCTTATACAAGCCTTTCATTTAAAAGTTT  640

seq1  AGACCTGTTGTGAATCATGTTGCTACCATTTCAGTCCCTGCACTATCTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTTGTGAATCATGTTGCTACCATTTCAGTCCCTGCACTATCTCA  690

seq1  ATATAATGCAATTGAACAACTACACTTAAGCTCCAGTCCCGGGAGATAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGCAATTGAACAACTACACTTAAGCTCCAGTCCCGGGAGATAAC  740

seq1  TAATAGTCACTCTAAGGTGATGTGGGTTATAAAGGAAGTTGGGTATTAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCACTCTAAGGTGATGTGGGTTATAAAGGAAGTTGGGTATTAAT  790

seq1  TATAATACTTGCCATTTAAAAAATTGGTGGTGTGTGTAATTTTACCTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTTGCCATTTAAAAAATTGGTGGTGTGTGTAATTTTACCTCAT  840

seq1  TTTCTCATTTGCCACTGTTATTTAAATTGCTTCCCAGCACCAAGCATGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTGCCACTGTTATTTAAATTGCTTCCCAGCACCAAGCATGTG  890

seq1  CAGAAAAGATGATTGTTCCAAATTTAACCTTTTAAATAAAATGTGTTCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGATGATTGTTCCAAATTTAACCTTTTAAATAAAATGTGTTCTA  940

seq1  TTAATTAAGTCATTGCCGCACCCTCTCTTTTCCATTATGTTTGTTCATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGTCATTGCCGCACCCTCTCTTTTCCATTATGTTTGTTCATTT  990

seq1  GTCGTTGATCCTAAAGATAGGCATCTGTGTCAGAGAATATTTGGAGAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGATCCTAAAGATAGGCATCTGTGTCAGAGAATATTTGGAGAAAG  1040

seq1  ACCCCTAATTTTTGTGCCTGTCATCCATTTGGATTTTTCCACAGTGTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAATTTTTGTGCCTGTCATCCATTTGGATTTTTCCACAGTGTTTT  1090

seq1  TAAAAATAGTTTATTTCAGTGTTCTAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGTTTATTTCAGTGTTCTAAAGAATTC  1124