BAC Information

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BAC

Clone NameB6Ng01-301O06
Chromosome1 (Build37)
Map Location 88,657,571 - 88,748,479
singlet/doubletdoublet
Overlap gene4930429A22Rik
Upstream geneA630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneEG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301O06.bB6Ng01-301O06.g
ACCGA096085GA096086
length1,1511,062
definitionB6Ng01-301O06.b B6Ng01-301O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,747,327 - 88,748,479)(88,657,571 - 88,658,642)
sequence
gaattctcagaaagaaaaaaaaaacagccctaaaggaacagggggggaaa
tacagtttggaggttaaggaatggcttatgaggaaatgacatttacatga
agacccagggattgtgtgggcaaaagtacaagggtgtgaggaaaggcacg
tgaagaagatgtgggggcagggcagtcttcatgtgtggtcttgactacag
tcaaggaccagaaagggaaccagaaagcagatgaaaggatgggttataca
agagatgagaaaggaacaacagcagtgaaatcaggagggccttccttgca
ggatacacaagtccagaatttcaacctagaaacaatggggatctgggttt
gtgcaagagtggcatggcccagagtggcatgggccagggcaagatcgaat
agactgagagtatgcatagagaacttgcttgaggacagagctgtggtcca
ggcactagagaactaagatatattttgcagttaaactgattgacaggtgg
gaattttatatgagaacttaagggttactgcaaatgaacagtgaagggtt
atttccagctttatgactttggcagttacattggtaggggcaccacttaa
agtttagagaaagaagtgaaatctagagttctaatttggagctggccata
catgctgatcacatgtatgatgctgaacaatcagctcaaaacaaaagttt
acaattcaaaagtgacagactggctttaaatacagtttgtatgctttgta
cttctgtacttaaactttcagtccaccaagtagagcagaggtttaacaca
aatctataactattatatccacaaaactttttccactgcttcatacaagg
aagggataatgcaccatcactgggtgtggaaacagaaatgttctagtacg
acatttacaggtagttatcagcagttgggagacactgtgctggggtggga
aagagctgccacaggagaaaagaatatggctgggagagaggtggggcaag
aatccatggcagagactcctagttactgcccatgtctagtctcttctttc
ctaatatgatgctcaatttaagcaggcagcctggctcaaagaacgatatt
tcttaaggatttttgcactatgtatggctgcaagtttggccgagctacca
g
agaaactatcctgacttttgttggaaaattgactgcagtgaggcaagttg
catgttacagggagccagtgtgaaagctgagacttggaggtgagagttga
ggtggagagaagttagcatgtgaagatagagtagacaggagtgaaggcag
ctgtaagaacagacaggggagctgcaaacagctgttacaccttgtattta
agcaaaatgaccgtgatttctttagctgaaatggaggacagtgagggaaa
gtatgtattactgtaaacatcactgaactggtaaaagtcagagaaaagag
ggtagagaactctgaagagcttgagagaggtagagagacattgaggaact
caaggttataatagagctgaaataggcagaggtaatatttgaaaaagaat
gatggaaacctctcaaactgatgaaagttatcaagcatcagaatcaagaa
attgtattgacccccaagtaggatgaaaagaaagtcatcctttgaatatg
gtggtaagtctgcagaaaccaaagagaaaacatttccaaagtgccaggga
caggaacagtatgctttcaaaaattaagagagtaacagctgacttgttga
tagccacagagattataagacaaggggatgatatcttcggctctgaatct
agttgatagtctagaactctaaatctgccaaaacctgccaaaaatctatg
agagcaaagactacatacagatatgtcacacttgttcaaaagacatgact
agtggctgtcacactggacctcacagacatgcaagtgtctgtcactgcag
aaaccatgtcttcttaaagaaagtgactgagaatgtagctcagtggtact
gtatgacatgtgcaaaccatgagcttcagtcttcagcacagtggaaacca
gatagcacgccagcatcagttacattctgcccgcatgattttcatgccta
ctagcttctactggtcttgataatatcttcctgttggagatattactgaa
caaacctcagcatcctcgattgtccacgtactgcagtcttgctaacattt
tttccctgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88747327_88748479
seq2: B6Ng01-301O06.b_46_1196 (reverse)

seq1  CTGGTTAAAGCTCTGGCCAAAACTGGCAGCCATACATAGTTGCAAAAAAT  50
      |||||   ||||| |||| ||||| |||||||||||||| ||| ||||||
seq2  CTGGT---AGCTC-GGCC-AAACTTGCAGCCATACATAG-TGC-AAAAAT  43

seq1  CCTAAAG-AATATCGTCTTTTGA-CCAGGCTGCCCTGCTAAAATTTGGAG  98
      ||| ||| ||||||||  ||||| |||||||| |||||| |||||  |||
seq2  CCTTAAGAAATATCGTTCTTTGAGCCAGGCTG-CCTGCTTAAATT--GAG  90

seq1  CATTCATTATTAGGAAAGAAGAGACTAGACATGGGCAGTAACTA-GAGTC  147
      || ||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CA-TCA-TATTAGGAAAGAAGAGACTAGACATGGGCAGTAACTAGGAGTC  138

seq1  TCTGCCATGGA-TCTTGCCCCACCTCTCTCCCAGCCATAT--CTTTCTCC  194
      ||||||||||| ||||||||||||||||||||||||||||   |||||||
seq2  TCTGCCATGGATTCTTGCCCCACCTCTCTCCCAGCCATATTCTTTTCTCC  188

seq1  TGTGGCAGCTCTTTCCCA-CCCAGCACAGTGTCTCCAACCTGCTGATAAC  243
      |||||||||||||||||| ||||||||||||||||| | |||||||||||
seq2  TGTGGCAGCTCTTTCCCACCCCAGCACAGTGTCTCCCAACTGCTGATAAC  238

seq1  TA-CTGTAAATGTCGTACTAGAACATTTCTGTTTCCACA-CCAGTGATGG  291
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACCTGTAAATGTCGTACTAGAACATTTCTGTTTCCACACCCAGTGATGG  288

seq1  TGCATTATCCCTTCCTTGTATGAAGCAGTGG-AAAAGTTTTGTGGATATA  340
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCATTATCCCTTCCTTGTATGAAGCAGTGGAAAAAGTTTTGTGGATATA  338

seq1  ATAGTTATAGATTTGTGTTAAACCTCTGCTCTACTTGGTGGACTGAAAGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATAGATTTGTGTTAAACCTCTGCTCTACTTGGTGGACTGAAAGT  388

seq1  TTAAGTACAGAAGTACAAAGCATACAAACTGTATTTAAAGCCAGTCTGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTACAGAAGTACAAAGCATACAAACTGTATTTAAAGCCAGTCTGTC  438

seq1  ACTTTTGAATTGTAAACTTTTGTTTTGAGCTGATTGTTCAGCATCATACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAATTGTAAACTTTTGTTTTGAGCTGATTGTTCAGCATCATACA  488

seq1  TGTGATCAGCATGTATGGCCAGCTCCAAATTAGAACTCTAGATTTCACTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAGCATGTATGGCCAGCTCCAAATTAGAACTCTAGATTTCACTT  538

seq1  CTTTCTCTAAACTTTAAGTGGTGCCCCTACCAATGTAACTGCCAAAGTCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAAACTTTAAGTGGTGCCCCTACCAATGTAACTGCCAAAGTCA  588

seq1  TAAAGCTGGAAATAACCCTTCACTGTTCATTTGCAGTAACCCTTAAGTTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGGAAATAACCCTTCACTGTTCATTTGCAGTAACCCTTAAGTTC  638

seq1  TCATATAAAATTCCCACCTGTCAATCAGTTTAACTGCAAAATATATCTTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAAATTCCCACCTGTCAATCAGTTTAACTGCAAAATATATCTTA  688

seq1  GTTCTCTAGTGCCTGGACCACAGCTCTGTCCTCAAGCAAGTTCTCTATGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTAGTGCCTGGACCACAGCTCTGTCCTCAAGCAAGTTCTCTATGC  738

seq1  ATACTCTCAGTCTATTCGATCTTGCCCTGGCCCATGCCACTCTGGGCCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGTCTATTCGATCTTGCCCTGGCCCATGCCACTCTGGGCCAT  788

seq1  GCCACTCTTGCACAAACCCAGATCCCCATTGTTTCTAGGTTGAAATTCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTTGCACAAACCCAGATCCCCATTGTTTCTAGGTTGAAATTCTG  838

seq1  GACTTGTGTATCCTGCAAGGAAGGCCCTCCTGATTTCACTGCTGTTGTTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGTATCCTGCAAGGAAGGCCCTCCTGATTTCACTGCTGTTGTTC  888

seq1  CTTTCTCATCTCTTGTATAACCCATCCTTTCATCTGCTTTCTGGTTCCCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATCTCTTGTATAACCCATCCTTTCATCTGCTTTCTGGTTCCCT  938

seq1  TTCTGGTCCTTGACTGTAGTCAAGACCACACATGAAGACTGCCCTGCCCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCCTTGACTGTAGTCAAGACCACACATGAAGACTGCCCTGCCCC  988

seq1  CACATCTTCTTCACGTGCCTTTCCTCACACCCTTGTACTTTTGCCCACAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTTCACGTGCCTTTCCTCACACCCTTGTACTTTTGCCCACAC  1038

seq1  AATCCCTGGGTCTTCATGTAAATGTCATTTCCTCATAAGCCATTCCTTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGGGTCTTCATGTAAATGTCATTTCCTCATAAGCCATTCCTTAA  1088

seq1  CCTCCAAACTGTATTTCCCCCCCTGTTCCTTTAGGGCTGTTTTTTTTTTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACTGTATTTCCCCCCCTGTTCCTTTAGGGCTGTTTTTTTTTTC  1138

seq1  TTTCTGAGAATTC  1153
      |||||||||||||
seq2  TTTCTGAGAATTC  1151

seq1: chr1_88657571_88658642
seq2: B6Ng01-301O06.g_75_1136

seq1  AGAAACTATCCTGACTTTTGTTGGAAAATTGACTGCAGTGAGGCAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATCCTGACTTTTGTTGGAAAATTGACTGCAGTGAGGCAAGTTG  50

seq1  CATGTTACAGGGAGCCAGTGTGAAAGCTGAGACTTGGAGGTGAGAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACAGGGAGCCAGTGTGAAAGCTGAGACTTGGAGGTGAGAGTTGA  100

seq1  GGTGGAGAGAAGTTAGCATGTGAAGATAGAGTAGACAGGAGTGAAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGAAGTTAGCATGTGAAGATAGAGTAGACAGGAGTGAAGGCAG  150

seq1  CTGTAAGAACAGACAGGGGAGCTGCAAACAGCTGTTACACCTTGTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAACAGACAGGGGAGCTGCAAACAGCTGTTACACCTTGTATTTA  200

seq1  AGCAAAATGACCGTGATTTCTTTAGCTGAAATGGAGGACAGTGAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGACCGTGATTTCTTTAGCTGAAATGGAGGACAGTGAGGGAAA  250

seq1  GTATGTATTACTGTAAACATCACTGAACTGGTAAAAGTCAGAGAAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTACTGTAAACATCACTGAACTGGTAAAAGTCAGAGAAAAGAG  300

seq1  GGTAGAGAACTCTGAAGAGCTTGAGAGAGGTAGAGAGACATTGAGGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAACTCTGAAGAGCTTGAGAGAGGTAGAGAGACATTGAGGAACT  350

seq1  CAAGGTTATAATAGAGCTGAAATAGGCAGAGGTAATATTTGAAAAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTATAATAGAGCTGAAATAGGCAGAGGTAATATTTGAAAAAGAAT  400

seq1  GATGGAAACCTCTCAAACTGATGAAAGTTATCAAGCATCAGAATCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAACCTCTCAAACTGATGAAAGTTATCAAGCATCAGAATCAAGAA  450

seq1  ATTGTATTGACCCCCAAGTAGGATGAAAAGAAAGTCATCCTTTGAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGACCCCCAAGTAGGATGAAAAGAAAGTCATCCTTTGAATATG  500

seq1  GTGGTAAGTCTGCAGAAACCAAAGAGAAAACATTTCCAAAGTGCCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTCTGCAGAAACCAAAGAGAAAACATTTCCAAAGTGCCAGGGA  550

seq1  CAGGAACAGTATGCTTTCAAAAATTAAGAGAGTAACAGCTGACTTGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAGTATGCTTTCAAAAATTAAGAGAGTAACAGCTGACTTGTTGA  600

seq1  TAGCCACAGAGATTATAAGACAAGGGGATGATATCTTCGGCTCTGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACAGAGATTATAAGACAAGGGGATGATATCTTCGGCTCTGAATCT  650

seq1  AGTTGATAGTCTAGAACTCTAAATCTGCCAAAACCTGCCAAAAATCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATAGTCTAGAACTCTAAATCTGCCAAAACCTGCCAAAAATCTATG  700

seq1  AGAGCAAAGACTACATACAGATATGTCACACTTGTTCAAAAGACATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGACTACATACAGATATGTCACACTTGTTCAAAAGACATGACT  750

seq1  AGTGGCTGTCACACTGGACCTCACAGACATGCAAGTGTCTGTCACTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTCACACTGGACCTCACAGACATGCAAGTGTCTGTCACTGCAG  800

seq1  AAAACCATGTCTTCTTAAAGAAGGTGACTGAGAATGTAGCTCAGTGGTAC  850
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -AAACCATGTCTTCTTAAAGAAAGTGACTGAGAATGTAGCTCAGTGGTAC  849

seq1  TGTATGACATGTGCAAACCCTGAGCTTCAGTCTTCAGCACAGTGGAAACC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTATGACATGTGCAAACCATGAGCTTCAGTCTTCAGCACAGTGGAAACC  899

seq1  AGATAGCACAGGAGCATCAGTCACATTCTGCCCTCATGTTTTTCATGCCT  950
      |||||||||   ||||||||| ||||||||||| |||| |||||||||||
seq2  AGATAGCACGCCAGCATCAGTTACATTCTGCCCGCATGATTTTCATGCCT  949

seq1  ACTAGCTTTTTCTTGGTCTTGTTAATATTTTCCTTTTTGGATATATTATT  1000
      |||||||| | | |||||||| |||||| |||| | ||||| |||||| |
seq2  ACTAGCTTCTAC-TGGTCTTGATAATATCTTCC-TGTTGGAGATATTACT  997

seq1  GAAAAAAACTTCAGCATCCTCGATTGTCCCACTTACTGGCAAGCCCTGCT  1050
      | || |||| ||||||||||||||||| |||| |||||   || | ||||
seq2  G-AACAAACCTCAGCATCCTCGATTGT-CCACGTACTG--CAGTCTTGCT  1043

seq1  AAACATTTTTTTCCCCTGCTAA  1072
       ||||||||||  |||||||||
seq2  -AACATTTTTT--CCCTGCTAA  1062