BAC Information

Click to search

BAC

Clone NameB6Ng01-302A22
Chromosome1 (Build37)
Map Location 71,888,992 - 72,029,109
singlet/doubletdoublet
Overlap geneLOC675667, EG667931
Upstream geneA830006F12Rik, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
Downstream geneEG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302A22.bB6Ng01-302A22.g
ACCGA096211GA096212
length5541,102
definitionB6Ng01-302A22.b B6Ng01-302A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,028,550 - 72,029,109)(71,888,992 - 71,890,114)
sequence
tttctggttttgcctgttttggagggaagaatctgtttagatcttcaata
aattgaacaaaccccacccatattgggtaaccttttttactctgctgatt
ttaatgttaatcttttctgaaaacatccttacacttttacactcagaaat
aatattcagtcaaatatacagatactctgtgacccagtcaagttcataca
taaaattagccatcccagtaagtgatggagcccagctactgaacttaaag
tgtgtgatttaattacaacgctctgctgcctgcccatataaatattattt
attcattcttgtgtaagttgcctaacaactctataaagacttaagcagct
atttaactcacttagcctcatgatttcctagttaccatgcctgaaacaac
ttcaccactaacaataacaaatataatattgattccactgttttcccaac
agttattgtgaagactaccgaagaatgattatgaaaacaaattgtttttt
tttacatttattattattattattttgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
gaattccagttatgtaagaccaaatccacctttccaaattgccacaggac
atctaaatatgtggctggatgtgacttccccaaattgctatgcagtgaaa
atgtcatagactctaaatatgcagggttttccccccaattacatacccta
gaaaatgtgatattttccccataggactgtattatattgggcttggctgt
gtgtcagtagattttagtagctagagaaaagaccatttttgctactgggc
tctgacagccacagactgattaatatagggatgatcatttgaatggtgcc
aacttatttctcttaacaaggagaatttgctttccaacagaaaacacgag
acattctctgtgcctggaagatacacaatgcccccccccccccagttccg
tgtagcctttgactattaaacttttatggagcgactattcattcagtcat
ctcttttctccactaaacacgagctccccgaggcactgggggtatcattt
gtctttatagcctcgatggtaaaggctgcattgagggtgatccagaaatg
gtggttaatgatctatcatacgatgcgaccccatggtctgcaaagacaag
tggtgtttgggaaaagacgccctggaaggaaggcagtgcccagaaacaaa
attcgttctgagtctttgccttgctcacaatctttgctccagggaaagag
taacagagatttaaccgaaacctcatttctcaacaaatatataaaaaccc
agaaagaaagacttaggacttggagcaacgaggcaacgttataatctagt
gacacggtctggctgtcttgccaccctgaaggtaattatttttgcagttt
aggacacacattgcatgaggtttctgccgttcttctatacatccaattct
tttcacacttcccctttgcatggcttgcaagggggtcgtcactgtgccag
caattatcctggtgctgctgagagagggagaaataatttaaaatggacat
tagcactgctgtctaaattttaaacagatctttgaaaatagagtcactct
ctttagtactggctatgttacgtgactcttcttacataaatggcgatggt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72028550_72029109
seq2: B6Ng01-302A22.b_43_602 (reverse)

seq1  ACACACACACACACACACACACACACACAAAATAATAATAATAATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAAAATAATAATAATAATAAATG  50

seq1  TAAAAAAAAACAATTTGTTTTCATAATCATTCTTCGGTAGTCTTCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAACAATTTGTTTTCATAATCATTCTTCGGTAGTCTTCACAAT  100

seq1  AACTGTTGGGAAAACAGTGGAATCAATATTATATTTGTTATTGTTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGGAAAACAGTGGAATCAATATTATATTTGTTATTGTTAGTGG  150

seq1  TGAAGTTGTTTCAGGCATGGTAACTAGGAAATCATGAGGCTAAGTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGTTTCAGGCATGGTAACTAGGAAATCATGAGGCTAAGTGAGTT  200

seq1  AAATAGCTGCTTAAGTCTTTATAGAGTTGTTAGGCAACTTACACAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTGCTTAAGTCTTTATAGAGTTGTTAGGCAACTTACACAAGAAT  250

seq1  GAATAAATAATATTTATATGGGCAGGCAGCAGAGCGTTGTAATTAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATAATATTTATATGGGCAGGCAGCAGAGCGTTGTAATTAAATCA  300

seq1  CACACTTTAAGTTCAGTAGCTGGGCTCCATCACTTACTGGGATGGCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTAAGTTCAGTAGCTGGGCTCCATCACTTACTGGGATGGCTAAT  350

seq1  TTTATGTATGAACTTGACTGGGTCACAGAGTATCTGTATATTTGACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATGAACTTGACTGGGTCACAGAGTATCTGTATATTTGACTGAA  400

seq1  TATTATTTCTGAGTGTAAAAGTGTAAGGATGTTTTCAGAAAAGATTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCTGAGTGTAAAAGTGTAAGGATGTTTTCAGAAAAGATTAACA  450

seq1  TTAAAATCAGCAGAGTAAAAAAGGTTACCCAATATGGGTGGGGTTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAGCAGAGTAAAAAAGGTTACCCAATATGGGTGGGGTTTGTTC  500

seq1  AATTTATTGAAGATCTAAACAGATTCTTCCCTCCAAAACAGGCAAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTGAAGATCTAAACAGATTCTTCCCTCCAAAACAGGCAAAACCA  550

seq1  GAAAGAATTC  560
      ||||||||||
seq2  GAAAGAATTC  560

seq1: chr1_71888992_71890114
seq2: B6Ng01-302A22.g_65_1166

seq1  GAATTCCAGTTATGTAAGACCAAATCCACCTTTCCAAATTGCCACAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTATGTAAGACCAAATCCACCTTTCCAAATTGCCACAGGAC  50

seq1  ATCTAAATATGTGGCTGGATGTGACTTCCCCAAATTGCTATGCAGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATATGTGGCTGGATGTGACTTCCCCAAATTGCTATGCAGTGAAA  100

seq1  ATGTCATAGACTCTAAATATGCAGGGTTTTCCCCCCAATTACATACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATAGACTCTAAATATGCAGGGTTTTCCCCCCAATTACATACCCTA  150

seq1  GAAAATGTGATATTTTCCCCATAGGACTGTATTATATTGGGCTTGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGATATTTTCCCCATAGGACTGTATTATATTGGGCTTGGCTGT  200

seq1  GTGTCAGTAGATTTTAGTAGCTAGAGAAAAGACCATTTTTGCTACTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTAGATTTTAGTAGCTAGAGAAAAGACCATTTTTGCTACTGGGC  250

seq1  TCTGACAGCCACAGACTGATTAATATAGGGATGATCATTTGAATGGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGCCACAGACTGATTAATATAGGGATGATCATTTGAATGGTGCC  300

seq1  AACTTATTTCTCTTAACAAGGAGAATTTGCTTTCCAACAGAAAACACGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTCTCTTAACAAGGAGAATTTGCTTTCCAACAGAAAACACGAG  350

seq1  ACATTCTCTGTGCCTGGAAGATACACAATGCCCCCCCCCCCCCAGTTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGTGCCTGGAAGATACACAATGCCCCCCCCCCCCCAGTTCCG  400

seq1  TGTAGCCTTTGACTATTAAACTTTTATGGAGCGACTATTCATTCAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTTGACTATTAAACTTTTATGGAGCGACTATTCATTCAGTCAT  450

seq1  CTCTTTTCTCCACTAAACACGAGCTCCCCGAGGCACTGGGGGTATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCCACTAAACACGAGCTCCCCGAGGCACTGGGGGTATCATTT  500

seq1  GTCTTTATAGCCTCGATGGTAAAGGCTGCATTGAGGGTGATCCAGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATAGCCTCGATGGTAAAGGCTGCATTGAGGGTGATCCAGAAATG  550

seq1  GTGGTTAATGATCTATCATACGATGCGACCCCATGGTCTGCAAAGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAATGATCTATCATACGATGCGACCCCATGGTCTGCAAAGACAAG  600

seq1  TGGTGTTTGGGAAAAGACGCCCTGGAAGGAAGGCAGTGCCCAGAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTGGGAAAAGACGCCCTGGAAGGAAGGCAGTGCCCAGAAACAAA  650

seq1  ATTCGTTCTGAGTCTTTGCCTTGCTCACAATCTTTGCTCCAGGGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCTGAGTCTTTGCCTTGCTCACAATCTTTGCTCCAGGGAAAGAG  700

seq1  TAACAGAGATTTAACCGAAACCTCATTTCTCAACAAATATATAAAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGATTTAACCGAAACCTCATTTCTCAACAAATATATAAAAACCC  750

seq1  AGAAAGAAAGACTTAGGACTTGGAGCAACGAGGCAACGTTATAATCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGACTTAGGACTTGGAGCAACGAGGCAACGTTATAATCTAGT  800

seq1  GACACGGTCTGGCTGTCTTGCCACCCTGAAGGTAATTATTTTTGCAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGTCTGGCTGTCTTGCCACCCTGAAGGTAATTATTTTTGCAGTTT  850

seq1  AGGACACACATTGCATGAGGTTTCTGCCGTTCTTCTATACATCCAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACATTGCATGAGGTTTCTGCCGTTCTTCTATACATCCAATTCT  900

seq1  TTTCACACTTCCCCTTTGCATGGCTTGGCAAGGGGGTCGTCACTGTGCCA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCACACTTCCCCTTTGCATGGCTT-GCAAGGGGGTCGTCACTGTGCCA  949

seq1  GCAATTATCCTGGTGCTGCTGAGAGAAGGGAGAAATTAATTTAAAAATGG  1000
      ||||||||||||||||||||||||| ||||||||| ||||||||||   |
seq2  GCAATTATCCTGGTGCTGCTGAGAG-AGGGAGAAA-TAATTTAAAA--TG  995

seq1  GACATTAAGCACTGCCTGTCTAAAATTTTAAACAGATCCTTTTGAAAAAT  1050
      |||||| ||||||| |||||| ||||||||||||||||  |||| |||||
seq2  GACATT-AGCACTG-CTGTCT-AAATTTTAAACAGATC--TTTG-AAAAT  1039

seq1  AGGAGTCACTTCTCTTTTAGGTACTGGGCTATGTTTCCTTTAAACTCTTC  1100
      | ||||||| |||||||   ||||| ||||||||| | |    |||||||
seq2  A-GAGTCAC-TCTCTTT--AGTACT-GGCTATGTTACGT---GACTCTTC  1081

seq1  TTTACATAAAAATGGC-ATGGTTT  1123
       ||||||  ||||||| |||||||
seq2  -TTACAT--AAATGGCGATGGTTT  1102