BAC Information

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BAC

Clone NameB6Ng01-302H06
Chromosome1 (Build37)
Map Location 71,770,185 - 71,878,351
singlet/doubletdoublet
Overlap geneLOC383528
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302H06.bB6Ng01-302H06.g
ACCGA096497GA096498
length1,1361,011
definitionB6Ng01-302H06.b B6Ng01-302H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,877,212 - 71,878,351)(71,770,185 - 71,771,197)
sequence
gaattctttggaagtcccgttgatgaaaatagtcttagaacaaggaaatt
ccatcatcggtcagaggaggtcttcagtcaccacaggacaggggttggct
tgggatgagtaacaataacagagttcctgagtttgctaagactcattgga
aaagcgtttgatggaaatgtagtctgcctggtgcttttggggttagatcc
ttaggagagcgtgttccatcctactggaacgatcaagcagaaatttgatg
ctcagataaaaccaagcccagactcgtcactggtttgaaatctctctgaa
ttctgaaactaaaagacaaggacacgcatgggtccactctctctgtctgt
cagggaaacacactggaaaatgttggacttaacaatacaaccaatgaagt
tatttacgtttagatgaaatgtgcttccaactgcacagctttctatgtat
taaacagcttaaaagcttcccagaagtttccatgcaggtggttgtacgcc
atagcattaaacgttagcaaactcaaagagagccatgaagccagaactca
gactttttgagcaaacaattggtaaaatgtatatagtcttggttttagga
tgagataaaagtacattttctttttttccattagggtccattttggaaga
atgtagctcggtgtattttgacatacccatatcctcaccaaaccaatact
cagattaaaaaaataacaattttctgtttccctgaagggtcctttgtagt
ttttcccagtcaatttctctgaaggttacaccgttctgacatccattagc
cttgactggtcgtacttgcctttgaacagagtattaaaatgttaacataa
ctaactgttactggttatacatccctcagagacatggcaggtcaatgtat
ttcctctcacctgttttttcatttgttcaaaacactatatagcatcacta
ctgcccagaagagagtgagaacataatattgaaaagaaagaattcatctg
cccctcgggaaaactatagaccatggaagaacaccttatacatatacata
ttacgtatacatatacgtatacatatactttacgtatacgtatacatata
cctatacctatgcccaaggtgtgcagttccttgcat
gaattctctatattgaactcagggcgtcttcatgcttgcacagcaagcac
ttacatgagccatgccccataccccatacctagcattttctagagacagt
atggattaaaaggaaattttacttatcatttagaatattagaatattttc
tttatatatttttattcccttgagatgagacaaaggtcactagaatgtat
agagtccatttatttattttttccacttttggttcaaaaagaagcgctcc
cagttctcagaacaagcaggcttactttggcttatgtttttatttgcgct
tgtctccacagccctctttgtgcctgtttttccctttccggcccttttga
gtcatatgttgacataactcagtgcaaagccttgggtttgaagagaagtg
gacactaagtccaggtacacagagattcttgtctgataacaccgcaaaca
ctctgcctgcagacttcctacatttgagacataatattttcgaacactaa
tttgccaagcaggttggcggtgactctgcctgcctgctgctgcttgtctg
aattaggaaggctctgtctaccctctctgactccgggtttgtttctcaag
tagacacactaataaagagctccttttgaagtagggaatctaggcttttt
ttcttccctaagctgtggagacaattttcaaaagtaacttctttactttt
gatgaaacacaactcacagctcatctcagaaagaaaaacatctcaaattt
tgcactgttgaaaatttcagtccaagaagctgtgtctttttttttttttt
ttttttttttttgatcatttgataaccttccctttcttctctatggcttc
acagtttgggaggttataggcacctaaggtcattgttcctatctgatgtt
ttcactgtgctcgggttgttacatttactacttagagagaaacacaaggc
gacatggaggggagaaagggagcacaaaggttaccagccagagctgagag
gcccagagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71877212_71878351
seq2: B6Ng01-302H06.b_44_1179 (reverse)

seq1  ATGC-AGGAACTGCACA-CTTGGGTATATGTATATGTATATGTATATGTA  48
      |||| |||||||||||| |||||| ||| ||||| ||||||||||| |||
seq2  ATGCAAGGAACTGCACACCTTGGGCATAGGTATAGGTATATGTATACGTA  50

seq1  TATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATA  98
      || ||| | ||||||||||| ||||||||||| |||     |||||||||
seq2  TACGTA-AAGTATATGTATACGTATATGTATACGTA-----ATATGTATA  94

seq1  TGTATAAGGTGTTCTTCCATGGTCTATAGTTTTCCCGA-GGGCAGATGAA  147
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTATAAGGTGTTCTTCCATGGTCTATAGTTTTCCCGAGGGGCAGATGAA  144

seq1  TTCTTTCTTTTTCAATATTATGTTCTCACTCTCTTCTGGGCAGTAGTGAT  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTC-TTTTCAATATTATGTTCTCACTCTCTTCTGGGCAGTAGTGAT  193

seq1  GCTATATAGTGTTTTGAACAAATGAAAAAACAGGTGAGAGGAAATACATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAGTGTTTTGAACAAATGAAAAAACAGGTGAGAGGAAATACATT  243

seq1  GACCTGCCATGTCTCTGAGGGATGTATAACCAGTAACAGTTAGTTATGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCATGTCTCTGAGGGATGTATAACCAGTAACAGTTAGTTATGTT  293

seq1  AACATTTTAATACTCTGTTCAAAGGCAAGTACGACCAGTCAAGGCTAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAATACTCTGTTCAAAGGCAAGTACGACCAGTCAAGGCTAATG  343

seq1  GATGTCAGAACGGTGTAACCTTCAGAGAAATTGACTGGGAAAAACTACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGAACGGTGTAACCTTCAGAGAAATTGACTGGGAAAAACTACAA  393

seq1  AGGACCCTTCAGGGAAACAGAAAATTGTTATTTTTTTAATCTGAGTATTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTTCAGGGAAACAGAAAATTGTTATTTTTTTAATCTGAGTATTG  443

seq1  GTTTGGTGAGGATATGGGTATGTCAAAATACACCGAGCTACATTCTTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGAGGATATGGGTATGTCAAAATACACCGAGCTACATTCTTCCA  493

seq1  AAATGGACCCTAATGGAAAAAAAGAAAATGTACTTTTATCTCATCCTAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACCCTAATGGAAAAAAAGAAAATGTACTTTTATCTCATCCTAAA  543

seq1  ACCAAGACTATATACATTTTACCAATTGTTTGCTCAAAAAGTCTGAGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACTATATACATTTTACCAATTGTTTGCTCAAAAAGTCTGAGTTC  593

seq1  TGGCTTCATGGCTCTCTTTGAGTTTGCTAACGTTTAATGCTATGGCGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATGGCTCTCTTTGAGTTTGCTAACGTTTAATGCTATGGCGTAC  643

seq1  AACCACCTGCATGGAAACTTCTGGGAAGCTTTTAAGCTGTTTAATACATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGCATGGAAACTTCTGGGAAGCTTTTAAGCTGTTTAATACATA  693

seq1  GAAAGCTGTGCAGTTGGAAGCACATTTCATCTAAACGTAAATAACTTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTGCAGTTGGAAGCACATTTCATCTAAACGTAAATAACTTCAT  743

seq1  TGGTTGTATTGTTAAGTCCAACATTTTCCAGTGTGTTTCCCTGACAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATTGTTAAGTCCAACATTTTCCAGTGTGTTTCCCTGACAGACA  793

seq1  GAGAGAGTGGACCCATGCGTGTCCTTGTCTTTTAGTTTCAGAATTCAGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGGACCCATGCGTGTCCTTGTCTTTTAGTTTCAGAATTCAGAG  843

seq1  AGATTTCAAACCAGTGACGAGTCTGGGCTTGGTTTTATCTGAGCATCAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAAACCAGTGACGAGTCTGGGCTTGGTTTTATCTGAGCATCAAA  893

seq1  TTTCTGCTTGATCGTTCCAGTAGGATGGAACACGCTCTCCTAAGGATCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTGATCGTTCCAGTAGGATGGAACACGCTCTCCTAAGGATCTA  943

seq1  ACCCCAAAAGCACCAGGCAGACTACATTTCCATCAAACGCTTTTCCAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAAGCACCAGGCAGACTACATTTCCATCAAACGCTTTTCCAATG  993

seq1  AGTCTTAGCAAACTCAGGAACTCTGTTATTGTTACTCATCCCAAGCCAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAGCAAACTCAGGAACTCTGTTATTGTTACTCATCCCAAGCCAAC  1043

seq1  CCCTGTCCTGTGGTGACTGAAGACCTCCTCTGACCGATGATGGAATTTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTGTGGTGACTGAAGACCTCCTCTGACCGATGATGGAATTTCC  1093

seq1  TTGTTCTAAGACTATTTTCATCAACGGGACTTCCAAAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTAAGACTATTTTCATCAACGGGACTTCCAAAGAATTC  1136

seq1: chr1_71770185_71771197
seq2: B6Ng01-302H06.g_68_1078

seq1  GAATTCTCTATATTGAACTCAGGGCGTCTTCATGCTTGCACAGCAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATATTGAACTCAGGGCGTCTTCATGCTTGCACAGCAAGCAC  50

seq1  TTACATGAGCCATGCCCCATACCCCATACCTAGCATTTTCTAGAGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAGCCATGCCCCATACCCCATACCTAGCATTTTCTAGAGACAGT  100

seq1  ATGGATTAAAAGGAAATTTTACTTATCATTTAGAATATTAGAATATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTAAAAGGAAATTTTACTTATCATTTAGAATATTAGAATATTTTC  150

seq1  TTTATATATTTTTATTCCCTTGAGATGAGACAAAGGTCACTAGAATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTTTTATTCCCTTGAGATGAGACAAAGGTCACTAGAATGTAT  200

seq1  AGAGTCCATTTATTTATTTTTTCCACTTTTGGTTCAAAAAGAAGCGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCATTTATTTATTTTTTCCACTTTTGGTTCAAAAAGAAGCGCTCC  250

seq1  CAGTTCTCAGAACAAGCAGGCTTACTTTGGCTTATGTTTTTATTTGCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAGAACAAGCAGGCTTACTTTGGCTTATGTTTTTATTTGCGCT  300

seq1  TGTCTCCACAGCCCTCTTTGTGCCTGTTTTTCCCTTTCCGGCCCTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCACAGCCCTCTTTGTGCCTGTTTTTCCCTTTCCGGCCCTTTTGA  350

seq1  GTCATATGTTGACATAACTCAGTGCAAAGCCTTGGGTTTGAAGAGAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGTTGACATAACTCAGTGCAAAGCCTTGGGTTTGAAGAGAAGTG  400

seq1  GACACTAAGTCCAGGTACACAGAGATTCTTGTCTGATAACACCGCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAGTCCAGGTACACAGAGATTCTTGTCTGATAACACCGCAAACA  450

seq1  CTCTGCCTGCAGACTTCCTACATTTGAGACATAATATTTTCGAACACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGCAGACTTCCTACATTTGAGACATAATATTTTCGAACACTAA  500

seq1  TTTGCCAAGCAGGTTGGCGGTGACTCTGCCTGCCTGCTGCTGCTTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAGCAGGTTGGCGGTGACTCTGCCTGCCTGCTGCTGCTTGTCTG  550

seq1  AATTAGGAAGGCTCTGTCTACCCTCTCTGACTCCGGGTTTGTTTCTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAGGCTCTGTCTACCCTCTCTGACTCCGGGTTTGTTTCTCAAG  600

seq1  TAGACACACTAATAAAGAGCTCCTTTTGAAGTAGGGAATCTAGGCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACACTAATAAAGAGCTCCTTTTGAAGTAGGGAATCTAGGCTTTTT  650

seq1  TTCTTCCCTAAGCTGTGGAGACAATTTTCAAAAGTAACTTCTTTACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTAAGCTGTGGAGACAATTTTCAAAAGTAACTTCTTTACTTTT  700

seq1  GATGAAACACAACTCACAGCTCATCTCAGAAAGAAAAACATCTCAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACACAACTCACAGCTCATCTCAGAAAGAAAAACATCTCAAATTT  750

seq1  TGCACTGTTGAAAATTTCAGTCCAAGAAGCTGTGTCTTTTTTTTTTTTTT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCACTGTTGAAAATTTCAGTCCAAGAAGCTGTGTC-TTTTTTTTTTTTT  799

seq1  TTTTTTTTTTTTTGATCATTTGATAACCTTCCCTTTCTTCTCTATGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGATCATTTGATAACCTTCCCTTTCTTCTCTATGGCTT  849

seq1  CACAGTTT-GGAGGTTATAGGCACCTAAAGTCATTGTTCCTATCTGATGT  899
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  CACAGTTTGGGAGGTTATAGGCACCTAAGGTCATTGTTCCTATCTGATGT  899

seq1  TTTCAACTGTGCTCGGGTTGTTACATTTACTACTTAAGAGAGAAACAACA  949
      |||| |||||||||||||||||||||||||||||| |||||||||||  |
seq2  TTTC-ACTGTGCTCGGGTTGTTACATTTACTACTT-AGAGAGAAACACAA  947

seq1  GGCGACATGGAGGGAAGAAAGGAAGCAACAAAGTTACCAGGCAGAGCTGA  999
      |||||||||||||| ||||||| ||||  || |||||||| |||||||||
seq2  GGCGACATGGAGGGGAGAAAGGGAGCACAAAGGTTACCAGCCAGAGCTGA  997

seq1  GAGCCCAAGAGTGG  1013
      ||| || |||||||
seq2  GAGGCCCAGAGTGG  1011